Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 GRINA-202ENST00000395068 1814 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
RFX3P48380 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
RFX3P48380 FGFR1-203ENST00000341462 6054 ntTSL 5 BASIC19.43■□□□□ 0.7
RFX3P48380 MBD3-201ENST00000156825 5518 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
RFX3P48380 RBKS-201ENST00000302188 1973 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
RFX3P48380 MSRB1-201ENST00000361871 1423 ntAPPRIS P2 TSL 1 (best) BASIC19.42■□□□□ 0.7
RFX3P48380 ROR1-201ENST00000371079 5832 ntAPPRIS P2 TSL 1 (best) BASIC19.42■□□□□ 0.7
RFX3P48380 DYNC1I1-211ENST00000537881 2146 ntTSL 5 BASIC19.42■□□□□ 0.7
RFX3P48380 MFSD3-201ENST00000301327 1548 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
RFX3P48380 AC061975.6-201ENST00000579045 1553 ntBASIC19.42■□□□□ 0.7
RFX3P48380 MRPL37-206ENST00000605337 1582 ntTSL 5 BASIC19.42■□□□□ 0.7
RFX3P48380 FOXB2-201ENST00000376708 1299 ntAPPRIS P1 BASIC19.42■□□□□ 0.7
RFX3P48380 AP002748.1-201ENST00000504911 580 ntTSL 3 BASIC19.42■□□□□ 0.7
RFX3P48380 CAPNS1-205ENST00000588780 1035 ntAPPRIS ALT2 TSL 5 BASIC19.42■□□□□ 0.7
RFX3P48380 PALM-208ENST00000592155 2272 ntTSL 4 BASIC19.42■□□□□ 0.7
RFX3P48380 RAB28-208ENST00000630951 1679 ntTSL 5 BASIC19.42■□□□□ 0.7
RFX3P48380 DBX2-201ENST00000332700 2806 ntAPPRIS P1 TSL 2 BASIC19.42■□□□□ 0.7
RFX3P48380 RETREG2-203ENST00000430297 4618 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
RFX3P48380 HLA-C-201ENST00000376228 1536 ntAPPRIS P2 BASIC19.41■□□□□ 0.7
RFX3P48380 AP005233.1-201ENST00000562341 2424 ntTSL 2 BASIC19.41■□□□□ 0.7
RFX3P48380 PDXDC1-205ENST00000535621 2048 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
RFX3P48380 LINC00682-201ENST00000498940 1625 ntTSL 3 BASIC19.41■□□□□ 0.7
RFX3P48380 PLCB2-204ENST00000557821 4517 ntAPPRIS ALT1 TSL 1 (best) BASIC19.41■□□□□ 0.7
RFX3P48380 MCAT-201ENST00000290429 2056 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
RFX3P48380 BCL7A-203ENST00000538010 6247 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
RFX3P48380 HSD11B1L-218ENST00000581773 1687 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
RFX3P48380 CENPVL3-201ENST00000417339 864 ntAPPRIS P1 BASIC19.41■□□□□ 0.7
RFX3P48380 AC034268.1-201ENST00000441047 882 ntBASIC19.41■□□□□ 0.7
RFX3P48380 HSD17B14-204ENST00000599157 991 ntTSL 3 BASIC19.41■□□□□ 0.7
RFX3P48380 AC008175.2-201ENST00000612840 297 ntBASIC19.41■□□□□ 0.7
RFX3P48380 MIR6821-201ENST00000617625 74 ntBASIC19.41■□□□□ 0.7
RFX3P48380 NAPEPLD-208ENST00000427257 1822 ntAPPRIS P1 TSL 2 BASIC19.41■□□□□ 0.7
RFX3P48380 PTDSS2-201ENST00000308020 2445 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
RFX3P48380 OLFM1-204ENST00000371793 2444 ntAPPRIS P1 TSL 3 BASIC19.41■□□□□ 0.7
RFX3P48380 SLC16A10-202ENST00000368851 2508 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
RFX3P48380 ADAMTS19-205ENST00000638972 5089 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
RFX3P48380 ADARB1-201ENST00000348831 6882 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
RFX3P48380 H2AFX-202ENST00000530167 1614 ntAPPRIS P1 BASIC19.4■□□□□ 0.7
RFX3P48380 ANKRD9-201ENST00000286918 6727 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
RFX3P48380 OTOP1-201ENST00000296358 1864 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
RFX3P48380 LARP6-202ENST00000344870 527 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
RFX3P48380 NDUFB2-207ENST00000465506 1101 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
RFX3P48380 SLC25A45-206ENST00000526432 894 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
RFX3P48380 AC106738.1-201ENST00000560487 359 ntTSL 3 BASIC19.4■□□□□ 0.7
RFX3P48380 AP001005.4-202ENST00000575325 560 ntTSL 4 BASIC19.4■□□□□ 0.7
RFX3P48380 TNFRSF11A-207ENST00000639222 855 ntAPPRIS ALT2 TSL 5 BASIC19.4■□□□□ 0.7
RFX3P48380 CCNE1-201ENST00000262643 2043 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
RFX3P48380 MAP7D1-201ENST00000316156 3456 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
RFX3P48380 KCTD12-201ENST00000377474 6225 ntAPPRIS P1 BASIC19.4■□□□□ 0.7
RFX3P48380 TPM1-208ENST00000404484 1568 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
RFX3P48380 RARA-201ENST00000254066 2414 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
RFX3P48380 UBE2I-205ENST00000402301 1708 ntTSL 1 (best) BASIC19.39■□□□□ 0.7
RFX3P48380 NAT8L-201ENST00000331662 5571 ntTSL 1 (best) BASIC19.39■□□□□ 0.7
RFX3P48380 P2RX4-202ENST00000337233 2032 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
RFX3P48380 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
RFX3P48380 LSM14A-202ENST00000540746 2152 ntTSL 2 BASIC19.39■□□□□ 0.69
RFX3P48380 EFCAB6-202ENST00000356087 1129 ntTSL 5 BASIC19.39■□□□□ 0.69
RFX3P48380 C19orf12-205ENST00000392278 895 ntTSL 2 BASIC19.39■□□□□ 0.69
RFX3P48380 MIR935-201ENST00000401179 91 ntBASIC19.39■□□□□ 0.69
RFX3P48380 SPOCK2-203ENST00000412663 1284 ntTSL 5 BASIC19.39■□□□□ 0.69
RFX3P48380 FRMD8-208ENST00000531296 366 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
RFX3P48380 AC012414.4-201ENST00000560839 1074 ntTSL 5 BASIC19.39■□□□□ 0.69
RFX3P48380 AC060814.5-201ENST00000630916 1074 ntTSL 2 BASIC19.39■□□□□ 0.69
RFX3P48380 AL133516.1-201ENST00000633012 540 ntTSL 5 BASIC19.39■□□□□ 0.69
RFX3P48380 EFS-202ENST00000351354 2704 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
RFX3P48380 SH2B1-202ENST00000337120 6043 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
RFX3P48380 MAP1LC3A-201ENST00000360668 1574 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
RFX3P48380 NAA20-203ENST00000398602 1604 ntTSL 5 BASIC19.39■□□□□ 0.69
RFX3P48380 DDIT4-201ENST00000307365 1748 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
RFX3P48380 TMEM17-201ENST00000335390 1797 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
RFX3P48380 RITA1-201ENST00000548278 2053 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
RFX3P48380 MAG-203ENST00000537831 2341 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
RFX3P48380 RELA-201ENST00000308639 2681 ntAPPRIS ALT1 TSL 1 (best) BASIC19.38■□□□□ 0.69
RFX3P48380 CEBPE-201ENST00000206513 1554 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
RFX3P48380 CCDC130-201ENST00000221554 1792 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
RFX3P48380 YBX3-202ENST00000279550 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
RFX3P48380 ALX3-201ENST00000369792 1859 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
RFX3P48380 ZGPAT-204ENST00000369967 1890 ntAPPRIS P1 TSL 5 BASIC19.38■□□□□ 0.69
RFX3P48380 NRL-201ENST00000396995 810 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
RFX3P48380 GPC1-202ENST00000420138 1835 ntTSL 5 BASIC19.38■□□□□ 0.69
RFX3P48380 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC19.38■□□□□ 0.69
RFX3P48380 AC092468.1-201ENST00000491321 562 ntTSL 4 BASIC19.38■□□□□ 0.69
RFX3P48380 ATPIF1-204ENST00000497986 599 ntTSL 2 BASIC19.38■□□□□ 0.69
RFX3P48380 CLDN23-201ENST00000519106 2169 ntAPPRIS P1 BASIC19.38■□□□□ 0.69
RFX3P48380 TSPAN11-202ENST00000535215 988 ntTSL 2 BASIC19.38■□□□□ 0.69
RFX3P48380 GALNS-213ENST00000569433 723 ntTSL 3 BASIC19.38■□□□□ 0.69
RFX3P48380 NTF6G-201ENST00000591094 616 ntBASIC19.38■□□□□ 0.69
RFX3P48380 AP004607.4-201ENST00000530158 1459 ntBASIC19.37■□□□□ 0.69
RFX3P48380 STX18-205ENST00000505286 1380 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
RFX3P48380 SPATA22-214ENST00000575375 1374 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
RFX3P48380 SP9-201ENST00000394967 2554 ntAPPRIS P1 TSL 5 BASIC19.37■□□□□ 0.69
RFX3P48380 HIST2H2AC-201ENST00000331380 390 ntAPPRIS P1 BASIC19.37■□□□□ 0.69
RFX3P48380 CPED1-202ENST00000340646 1056 ntTSL 5 BASIC19.37■□□□□ 0.69
RFX3P48380 ZNF292-204ENST00000392985 1096 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
RFX3P48380 ZPBP-201ENST00000046087 1213 ntAPPRIS P3 TSL 1 (best) BASIC19.37■□□□□ 0.69
RFX3P48380 BEX2-204ENST00000536889 1077 ntTSL 2 BASIC19.37■□□□□ 0.69
RFX3P48380 TRAPPC2L-213ENST00000567895 854 ntTSL 3 BASIC19.37■□□□□ 0.69
RFX3P48380 AP001160.3-201ENST00000601484 763 ntBASIC19.37■□□□□ 0.69
RFX3P48380 ANKS1A-201ENST00000360359 6347 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
RFX3P48380 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC19.37■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 18 ms