Protein–RNA interactions for Protein: C9J1S8

TRIM49D1, Tripartite motif-containing protein 49D, humanhuman

Predictions only

Length 452 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM49D1C9J1S8 SLC25A22-216ENST00000531214 1790 ntAPPRIS P1 TSL 2 BASIC20.76■□□□□ 0.91
TRIM49D1C9J1S8 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
TRIM49D1C9J1S8 C7orf43-201ENST00000316937 2520 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
TRIM49D1C9J1S8 METRNL-203ENST00000571814 1900 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
TRIM49D1C9J1S8 DET1-207ENST00000564406 2315 ntTSL 2 BASIC20.76■□□□□ 0.91
TRIM49D1C9J1S8 C18orf25-204ENST00000615553 2329 ntTSL 5 BASIC20.76■□□□□ 0.91
TRIM49D1C9J1S8 ANAPC13-204ENST00000510994 1840 ntAPPRIS P1 TSL 2 BASIC20.76■□□□□ 0.91
TRIM49D1C9J1S8 SUSD1-204ENST00000374270 3124 ntAPPRIS P3 TSL 1 (best) BASIC20.76■□□□□ 0.91
TRIM49D1C9J1S8 ZDHHC7-203ENST00000564466 1488 ntTSL 5 BASIC20.75■□□□□ 0.91
TRIM49D1C9J1S8 SPON2-201ENST00000290902 1869 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
TRIM49D1C9J1S8 NUP160-203ENST00000526870 1537 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
TRIM49D1C9J1S8 SEPT5-210ENST00000455784 2070 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
TRIM49D1C9J1S8 TNIP2-203ENST00000503235 1653 ntTSL 3 BASIC20.75■□□□□ 0.91
TRIM49D1C9J1S8 PRADC1-201ENST00000258083 1083 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
TRIM49D1C9J1S8 ORMDL1-202ENST00000392349 1137 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
TRIM49D1C9J1S8 RNF146-206ENST00000480444 843 ntTSL 2 BASIC20.75■□□□□ 0.91
TRIM49D1C9J1S8 OTUB1-212ENST00000543988 1259 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
TRIM49D1C9J1S8 AL355102.2-201ENST00000553811 600 ntAPPRIS P1 TSL 2 BASIC20.75■□□□□ 0.91
TRIM49D1C9J1S8 EZH2-201ENST00000320356 2639 ntAPPRIS P4 TSL 1 (best) BASIC20.75■□□□□ 0.91
TRIM49D1C9J1S8 P4HB-201ENST00000331483 2603 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
TRIM49D1C9J1S8 CLN3-207ENST00000395653 1430 ntTSL 5 BASIC20.75■□□□□ 0.91
TRIM49D1C9J1S8 LHX9-206ENST00000561173 2144 ntTSL 5 BASIC20.75■□□□□ 0.91
TRIM49D1C9J1S8 TTBK1-202ENST00000304139 2449 ntTSL 5 BASIC20.75■□□□□ 0.91
TRIM49D1C9J1S8 PRMT2-210ENST00000458387 1874 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
TRIM49D1C9J1S8 DMWD-202ENST00000377735 3292 ntAPPRIS ALT2 TSL 5 BASIC20.75■□□□□ 0.91
TRIM49D1C9J1S8 BYSL-201ENST00000230340 2029 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
TRIM49D1C9J1S8 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC20.75■□□□□ 0.91
TRIM49D1C9J1S8 LLGL2-202ENST00000375227 1374 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
TRIM49D1C9J1S8 TMEM121-202ENST00000431372 1519 ntAPPRIS P1 TSL 5 BASIC20.74■□□□□ 0.91
TRIM49D1C9J1S8 NSUN5-204ENST00000438747 1663 ntAPPRIS P4 TSL 1 (best) BASIC20.74■□□□□ 0.91
TRIM49D1C9J1S8 MSLN-205ENST00000563941 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
TRIM49D1C9J1S8 SOX8-201ENST00000293894 3049 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
TRIM49D1C9J1S8 AL161756.1-202ENST00000359491 1717 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
TRIM49D1C9J1S8 ZNF32-202ENST00000395797 1201 ntAPPRIS P1 TSL 2 BASIC20.74■□□□□ 0.91
TRIM49D1C9J1S8 AICDA-202ENST00000537228 667 ntTSL 5 BASIC20.74■□□□□ 0.91
TRIM49D1C9J1S8 PACSIN3-211ENST00000539589 2009 ntAPPRIS P1 TSL 2 BASIC20.74■□□□□ 0.91
TRIM49D1C9J1S8 AC090241.2-201ENST00000602329 432 ntTSL 4 BASIC20.74■□□□□ 0.91
TRIM49D1C9J1S8 AL136162.1-201ENST00000607711 1078 ntBASIC20.74■□□□□ 0.91
TRIM49D1C9J1S8 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC20.74■□□□□ 0.91
TRIM49D1C9J1S8 AC105233.4-201ENST00000642045 216 ntBASIC20.74■□□□□ 0.91
TRIM49D1C9J1S8 LINC00682-201ENST00000498940 1625 ntTSL 3 BASIC20.74■□□□□ 0.91
TRIM49D1C9J1S8 GSR-204ENST00000537535 1323 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
TRIM49D1C9J1S8 MAMSTR-203ENST00000594582 1693 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
TRIM49D1C9J1S8 USP21-203ENST00000368002 2342 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
TRIM49D1C9J1S8 PQLC2-201ENST00000375153 2153 ntAPPRIS P1 TSL 2 BASIC20.73■□□□□ 0.91
TRIM49D1C9J1S8 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
TRIM49D1C9J1S8 TANGO2-217ENST00000456048 2439 ntTSL 2 BASIC20.73■□□□□ 0.91
TRIM49D1C9J1S8 DISC1-215ENST00000602281 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
TRIM49D1C9J1S8 CRLF3-201ENST00000324238 2957 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
TRIM49D1C9J1S8 YIF1A-201ENST00000359461 943 ntTSL 2 BASIC20.73■□□□□ 0.91
TRIM49D1C9J1S8 YIF1A-203ENST00000376901 1124 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
TRIM49D1C9J1S8 LHPP-203ENST00000392757 840 ntTSL 3 BASIC20.73■□□□□ 0.91
TRIM49D1C9J1S8 SCN1B-203ENST00000595652 814 ntTSL 2 BASIC20.73■□□□□ 0.91
TRIM49D1C9J1S8 HRH3-203ENST00000611492 900 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
TRIM49D1C9J1S8 AC093762.1-201ENST00000641981 837 ntAPPRIS P1 BASIC20.73■□□□□ 0.91
TRIM49D1C9J1S8 INSM1-201ENST00000310227 2829 ntAPPRIS P1 BASIC20.73■□□□□ 0.91
TRIM49D1C9J1S8 NDUFAF1-201ENST00000260361 1461 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
TRIM49D1C9J1S8 PRR7-201ENST00000323249 1480 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
TRIM49D1C9J1S8 HLA-G-204ENST00000376828 1490 ntAPPRIS ALT2 BASIC20.73■□□□□ 0.91
TRIM49D1C9J1S8 ACBD4-201ENST00000321854 1806 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
TRIM49D1C9J1S8 HIC1-207ENST00000619757 6711 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
TRIM49D1C9J1S8 SOX4-201ENST00000244745 5852 ntAPPRIS P1 BASIC20.73■□□□□ 0.91
TRIM49D1C9J1S8 ADM-206ENST00000528655 1889 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
TRIM49D1C9J1S8 MAP3K15-201ENST00000338883 4012 ntAPPRIS P1 TSL 5 BASIC20.73■□□□□ 0.91
TRIM49D1C9J1S8 GPR108-201ENST00000264080 2057 ntAPPRIS P2 TSL 1 (best) BASIC20.73■□□□□ 0.91
TRIM49D1C9J1S8 SYTL1-211ENST00000618673 1712 ntTSL 5 BASIC20.73■□□□□ 0.91
TRIM49D1C9J1S8 CSNK1G3-206ENST00000511130 1356 ntTSL 2 BASIC20.72■□□□□ 0.91
TRIM49D1C9J1S8 SDR39U1-208ENST00000554698 1364 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
TRIM49D1C9J1S8 AGAP3-202ENST00000397238 3225 ntAPPRIS P2 TSL 1 (best) BASIC20.72■□□□□ 0.91
TRIM49D1C9J1S8 CTNND2-201ENST00000304623 5481 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
TRIM49D1C9J1S8 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC20.72■□□□□ 0.91
TRIM49D1C9J1S8 AL512408.1-201ENST00000569378 2000 ntBASIC20.72■□□□□ 0.91
TRIM49D1C9J1S8 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC20.72■□□□□ 0.91
TRIM49D1C9J1S8 ILF3-217ENST00000589998 2622 ntTSL 2 BASIC20.72■□□□□ 0.91
TRIM49D1C9J1S8 DNPH1-201ENST00000230431 657 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
TRIM49D1C9J1S8 URAD-201ENST00000332715 931 ntAPPRIS P1 TSL 5 BASIC20.72■□□□□ 0.91
TRIM49D1C9J1S8 KRTAP17-1-201ENST00000334202 779 ntAPPRIS P1 BASIC20.72■□□□□ 0.91
TRIM49D1C9J1S8 ZFAS1-206ENST00000450535 1075 ntTSL 3 BASIC20.72■□□□□ 0.91
TRIM49D1C9J1S8 TMEM165-204ENST00000506198 828 ntTSL 2 BASIC20.72■□□□□ 0.91
TRIM49D1C9J1S8 TMEM179B-205ENST00000533861 797 ntTSL 5 BASIC20.72■□□□□ 0.91
TRIM49D1C9J1S8 AC008764.7-201ENST00000593779 1081 ntBASIC20.72■□□□□ 0.91
TRIM49D1C9J1S8 CHD1L-201ENST00000361293 2484 ntTSL 2 BASIC20.72■□□□□ 0.91
TRIM49D1C9J1S8 MAP7D2-203ENST00000443379 2476 ntAPPRIS ALT2 TSL 2 BASIC20.72■□□□□ 0.91
TRIM49D1C9J1S8 COLEC12-201ENST00000400256 5742 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
TRIM49D1C9J1S8 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
TRIM49D1C9J1S8 SUMO3-204ENST00000411651 1921 ntTSL 2 BASIC20.72■□□□□ 0.91
TRIM49D1C9J1S8 SDHA-220ENST00000617470 1952 ntTSL 5 BASIC20.72■□□□□ 0.91
TRIM49D1C9J1S8 MGAT5B-201ENST00000301618 4486 ntAPPRIS P3 TSL 5 BASIC20.72■□□□□ 0.91
TRIM49D1C9J1S8 MEF2A-202ENST00000354410 5824 ntAPPRIS P3 TSL 1 (best) BASIC20.72■□□□□ 0.91
TRIM49D1C9J1S8 NRXN1-202ENST00000342183 3315 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
TRIM49D1C9J1S8 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC20.71■□□□□ 0.91
TRIM49D1C9J1S8 NPAS3-210ENST00000551492 2817 ntAPPRIS ALT2 TSL 5 BASIC20.71■□□□□ 0.91
TRIM49D1C9J1S8 BCR-202ENST00000359540 4708 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
TRIM49D1C9J1S8 ZEB1-AS1-201ENST00000423714 456 ntTSL 3 BASIC20.71■□□□□ 0.91
TRIM49D1C9J1S8 AP003419.1-201ENST00000535922 470 ntTSL 3 BASIC20.71■□□□□ 0.91
TRIM49D1C9J1S8 MADCAM1-208ENST00000621286 1203 ntAPPRIS ALT2 TSL 5 BASIC20.71■□□□□ 0.91
TRIM49D1C9J1S8 NBPF26-209ENST00000624419 1133 ntTSL 5 BASIC20.71■□□□□ 0.91
TRIM49D1C9J1S8 SCUBE1-201ENST00000290460 2258 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
TRIM49D1C9J1S8 CDCA4-201ENST00000336219 2513 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
TRIM49D1C9J1S8 TPCN2-208ENST00000637342 2856 ntTSL 5 BASIC20.71■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 28.4 ms