Protein–RNA interactions for Protein: A0A5B6

TCRBV3S1, T-cell receptor beta variable 28 (Fragment), humanhuman

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TCRBV3S1A0A5B6 ASPG-201ENST00000546892 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
TCRBV3S1A0A5B6 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC19.44■□□□□ 0.7
TCRBV3S1A0A5B6 COL15A1-205ENST00000610452 5422 ntAPPRIS ALT2 TSL 5 BASIC19.44■□□□□ 0.7
TCRBV3S1A0A5B6 ASCL4-201ENST00000342331 2260 ntAPPRIS P1 BASIC19.44■□□□□ 0.7
TCRBV3S1A0A5B6 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
TCRBV3S1A0A5B6 RUSC1-AS1-203ENST00000450199 1636 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
TCRBV3S1A0A5B6 PIANP-201ENST00000320591 2323 ntAPPRIS P3 TSL 1 (best) BASIC19.43■□□□□ 0.7
TCRBV3S1A0A5B6 ZBTB33-202ENST00000557385 2346 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
TCRBV3S1A0A5B6 CHP2-201ENST00000300113 2382 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
TCRBV3S1A0A5B6 CDH5-202ENST00000539168 1672 ntTSL 2 BASIC19.43■□□□□ 0.7
TCRBV3S1A0A5B6 DMRT2-201ENST00000259622 2459 ntTSL 2 BASIC19.43■□□□□ 0.7
TCRBV3S1A0A5B6 CD82-201ENST00000227155 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
TCRBV3S1A0A5B6 BX005040.4-201ENST00000637145 1518 ntBASIC19.43■□□□□ 0.7
TCRBV3S1A0A5B6 SPAG16-201ENST00000272898 1059 ntTSL 5 BASIC19.43■□□□□ 0.7
TCRBV3S1A0A5B6 UBE2C-202ENST00000335046 737 ntTSL 2 BASIC19.43■□□□□ 0.7
TCRBV3S1A0A5B6 TMEM170A-202ENST00000561878 1072 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
TCRBV3S1A0A5B6 MIR6724-1-201ENST00000616420 92 ntBASIC19.43■□□□□ 0.7
TCRBV3S1A0A5B6 MIR6724-2-201ENST00000616483 92 ntBASIC19.43■□□□□ 0.7
TCRBV3S1A0A5B6 MIR6724-4-201ENST00000617390 92 ntBASIC19.43■□□□□ 0.7
TCRBV3S1A0A5B6 MIR6724-3-201ENST00000622482 92 ntBASIC19.43■□□□□ 0.7
TCRBV3S1A0A5B6 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
TCRBV3S1A0A5B6 HIC1-201ENST00000322941 3053 ntAPPRIS P1 TSL 5 BASIC19.43■□□□□ 0.7
TCRBV3S1A0A5B6 ARMC6-202ENST00000392335 2383 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
TCRBV3S1A0A5B6 SMG1P5-201ENST00000411546 2362 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
TCRBV3S1A0A5B6 RCCD1-201ENST00000394258 2689 ntAPPRIS P2 TSL 1 (best) BASIC19.43■□□□□ 0.7
TCRBV3S1A0A5B6 PARD3-207ENST00000374788 5996 ntAPPRIS ALT1 TSL 1 (best) BASIC19.43■□□□□ 0.7
TCRBV3S1A0A5B6 AC125437.2-201ENST00000625180 2167 ntBASIC19.43■□□□□ 0.7
TCRBV3S1A0A5B6 BRSK1-201ENST00000309383 3079 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
TCRBV3S1A0A5B6 RAB11FIP4-201ENST00000394744 1968 ntTSL 2 BASIC19.43■□□□□ 0.7
TCRBV3S1A0A5B6 NOTCH2NL-204ENST00000579793 1954 ntAPPRIS ALT2 TSL 2 BASIC19.43■□□□□ 0.7
TCRBV3S1A0A5B6 C1QTNF1-201ENST00000311661 2624 ntTSL 2 BASIC19.42■□□□□ 0.7
TCRBV3S1A0A5B6 FOXL2-201ENST00000330315 2917 ntAPPRIS P1 BASIC19.42■□□□□ 0.7
TCRBV3S1A0A5B6 CBWD6-201ENST00000377391 1792 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
TCRBV3S1A0A5B6 PTGER3-212ENST00000628037 1815 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
TCRBV3S1A0A5B6 FAM239A-202ENST00000438107 2155 ntTSL 5 BASIC19.42■□□□□ 0.7
TCRBV3S1A0A5B6 AURKAIP1-204ENST00000378853 875 ntAPPRIS P1 TSL 2 BASIC19.42■□□□□ 0.7
TCRBV3S1A0A5B6 MDK-203ENST00000395566 828 ntAPPRIS P2 TSL 1 (best) BASIC19.42■□□□□ 0.7
TCRBV3S1A0A5B6 AL122058.1-201ENST00000412321 1166 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
TCRBV3S1A0A5B6 GPX4-213ENST00000622390 1002 ntTSL 5 BASIC19.42■□□□□ 0.7
TCRBV3S1A0A5B6 CCDC62-204ENST00000392441 2936 ntAPPRIS ALT2 TSL 5 BASIC19.42■□□□□ 0.7
TCRBV3S1A0A5B6 PROSER2-205ENST00000622831 1646 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
TCRBV3S1A0A5B6 TMUB1-201ENST00000297533 1353 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
TCRBV3S1A0A5B6 TSKS-202ENST00000358830 1367 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
TCRBV3S1A0A5B6 RCE1-202ENST00000524506 1379 ntTSL 5 BASIC19.42■□□□□ 0.7
TCRBV3S1A0A5B6 FOXC2-201ENST00000320354 2478 ntAPPRIS P1 BASIC19.42■□□□□ 0.7
TCRBV3S1A0A5B6 LARGE2-202ENST00000401752 2516 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
TCRBV3S1A0A5B6 STRBP-201ENST00000348403 3337 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
TCRBV3S1A0A5B6 B4GALT2-204ENST00000434555 1923 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
TCRBV3S1A0A5B6 DMPK-203ENST00000354227 1982 ntTSL 2 BASIC19.41■□□□□ 0.7
TCRBV3S1A0A5B6 BEAN1-202ENST00000536005 1988 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
TCRBV3S1A0A5B6 TRPV3-209ENST00000576742 2766 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
TCRBV3S1A0A5B6 NDUFB2-212ENST00000476279 1666 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
TCRBV3S1A0A5B6 TSPY9P-201ENST00000440215 945 ntBASIC19.41■□□□□ 0.7
TCRBV3S1A0A5B6 TSPY11P-201ENST00000442607 1045 ntBASIC19.41■□□□□ 0.7
TCRBV3S1A0A5B6 HOXC-AS1-201ENST00000505700 548 ntTSL 2 BASIC19.41■□□□□ 0.7
TCRBV3S1A0A5B6 CDC42EP1-201ENST00000249014 2181 ntAPPRIS P2 TSL 1 (best) BASIC19.41■□□□□ 0.7
TCRBV3S1A0A5B6 INPP1-202ENST00000392329 2162 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
TCRBV3S1A0A5B6 SH3GL1-206ENST00000598564 2194 ntTSL 2 BASIC19.41■□□□□ 0.7
TCRBV3S1A0A5B6 FPGS-203ENST00000373247 2279 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
TCRBV3S1A0A5B6 ATPIF1-202ENST00000465645 1855 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
TCRBV3S1A0A5B6 PKMYT1-213ENST00000574385 1892 ntAPPRIS P1 TSL 2 BASIC19.41■□□□□ 0.7
TCRBV3S1A0A5B6 PEX7-201ENST00000318471 1464 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
TCRBV3S1A0A5B6 HS3ST3A1-201ENST00000284110 2527 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
TCRBV3S1A0A5B6 TMEM259-209ENST00000592590 2509 ntTSL 5 BASIC19.41■□□□□ 0.7
TCRBV3S1A0A5B6 AZIN2-204ENST00000373443 2048 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
TCRBV3S1A0A5B6 CEP55-201ENST00000371485 2638 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
TCRBV3S1A0A5B6 VAV1-201ENST00000304076 2825 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
TCRBV3S1A0A5B6 STMN4-202ENST00000350889 2288 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
TCRBV3S1A0A5B6 MFSD1-219ENST00000622669 2361 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
TCRBV3S1A0A5B6 ST3GAL4-204ENST00000444328 1812 ntAPPRIS ALT1 TSL 5 BASIC19.4■□□□□ 0.7
TCRBV3S1A0A5B6 BZW1-202ENST00000409226 2455 ntTSL 2 BASIC19.4■□□□□ 0.7
TCRBV3S1A0A5B6 MRM1-204ENST00000614766 1857 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
TCRBV3S1A0A5B6 RNF208-201ENST00000391553 1077 ntAPPRIS P1 BASIC19.4■□□□□ 0.7
TCRBV3S1A0A5B6 RHBDL3-204ENST00000538145 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
TCRBV3S1A0A5B6 WIPI2-203ENST00000401525 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
TCRBV3S1A0A5B6 PPCS-203ENST00000372561 1431 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
TCRBV3S1A0A5B6 KRTAP5-7-201ENST00000398536 1408 ntAPPRIS P1 BASIC19.4■□□□□ 0.7
TCRBV3S1A0A5B6 GAS6-201ENST00000327773 2490 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
TCRBV3S1A0A5B6 SLC25A22-216ENST00000531214 1790 ntAPPRIS P1 TSL 2 BASIC19.39■□□□□ 0.7
TCRBV3S1A0A5B6 RNF8-204ENST00000469731 1800 ntTSL 5 BASIC19.39■□□□□ 0.7
TCRBV3S1A0A5B6 GLT8D1-206ENST00000478968 1826 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
TCRBV3S1A0A5B6 AC011484.1-201ENST00000377652 1995 ntBASIC19.39■□□□□ 0.7
TCRBV3S1A0A5B6 GPC5-201ENST00000377067 2957 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
TCRBV3S1A0A5B6 ENTPD8-201ENST00000344119 2111 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
TCRBV3S1A0A5B6 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
TCRBV3S1A0A5B6 AP005435.1-201ENST00000529293 1178 ntBASIC19.39■□□□□ 0.69
TCRBV3S1A0A5B6 AC018755.3-201ENST00000598755 664 ntTSL 2 BASIC19.39■□□□□ 0.69
TCRBV3S1A0A5B6 XPA-201ENST00000375128 1417 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
TCRBV3S1A0A5B6 TJP1-208ENST00000495972 2890 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
TCRBV3S1A0A5B6 BACE2-202ENST00000330333 2993 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
TCRBV3S1A0A5B6 BCAT2-207ENST00000597011 1579 ntTSL 5 BASIC19.39■□□□□ 0.69
TCRBV3S1A0A5B6 OR10C1-203ENST00000444197 1672 ntAPPRIS P1 BASIC19.39■□□□□ 0.69
TCRBV3S1A0A5B6 EXOC3-AS1-202ENST00000623673 1663 ntBASIC19.39■□□□□ 0.69
TCRBV3S1A0A5B6 PRSS33-204ENST00000576886 1755 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
TCRBV3S1A0A5B6 UBXN6-201ENST00000301281 1943 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
TCRBV3S1A0A5B6 TTLL7-214ENST00000610996 2028 ntTSL 5 BASIC19.39■□□□□ 0.69
TCRBV3S1A0A5B6 TAF7-201ENST00000313368 2334 ntAPPRIS P1 BASIC19.39■□□□□ 0.69
TCRBV3S1A0A5B6 KRT1-201ENST00000252244 2451 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
TCRBV3S1A0A5B6 DLGAP4-206ENST00000475894 3110 ntAPPRIS ALT2 TSL 2 BASIC19.38■□□□□ 0.69
TCRBV3S1A0A5B6 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC19.38■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 31.9 ms