Protein–RNA interactions for Protein: Q9H3Q1

CDC42EP4, Cdc42 effector protein 4, humanhuman

Known RBP Predictions only

Length 356 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDC42EP4Q9H3Q1 TMEM11-201ENST00000317635 2095 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CDC42EP4Q9H3Q1 FP700111.2-201ENST00000619190 1892 ntBASIC21.16■□□□□ 0.98
CDC42EP4Q9H3Q1 IFNGR2-203ENST00000405436 1684 ntTSL 5 BASIC21.16■□□□□ 0.98
CDC42EP4Q9H3Q1 EMC9-201ENST00000216799 835 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CDC42EP4Q9H3Q1 ANKRD63-201ENST00000434396 1143 ntAPPRIS P1 BASIC21.16■□□□□ 0.98
CDC42EP4Q9H3Q1 AC004707.1-201ENST00000511627 715 ntTSL 3 BASIC21.16■□□□□ 0.98
CDC42EP4Q9H3Q1 SRR-208ENST00000576848 588 ntTSL 4 BASIC21.16■□□□□ 0.98
CDC42EP4Q9H3Q1 FAM228B-208ENST00000613899 1238 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
CDC42EP4Q9H3Q1 SPNS2-201ENST00000329078 3447 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CDC42EP4Q9H3Q1 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC21.16■□□□□ 0.98
CDC42EP4Q9H3Q1 E4F1-201ENST00000301727 2573 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CDC42EP4Q9H3Q1 BID-204ENST00000399767 2129 ntTSL 2 BASIC21.16■□□□□ 0.98
CDC42EP4Q9H3Q1 SEC22C-207ENST00000423701 1458 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
CDC42EP4Q9H3Q1 SIRT3-204ENST00000525319 1475 ntAPPRIS ALT2 TSL 2 BASIC21.15■□□□□ 0.98
CDC42EP4Q9H3Q1 SDK1-201ENST00000389531 7606 ntAPPRIS ALT2 TSL 5 BASIC21.15■□□□□ 0.98
CDC42EP4Q9H3Q1 P2RX2-205ENST00000352418 1200 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
CDC42EP4Q9H3Q1 AL590128.2-201ENST00000442889 415 ntTSL 3 BASIC21.15■□□□□ 0.98
CDC42EP4Q9H3Q1 C15orf61-202ENST00000557807 769 ntTSL 2 BASIC21.15■□□□□ 0.98
CDC42EP4Q9H3Q1 MIR4466-201ENST00000606121 54 ntBASIC21.15■□□□□ 0.98
CDC42EP4Q9H3Q1 KRTAP5-4-202ENST00000616115 660 ntAPPRIS ALT2 TSL 5 BASIC21.15■□□□□ 0.98
CDC42EP4Q9H3Q1 TPD52-209ENST00000518937 2856 ntTSL 2 BASIC21.15■□□□□ 0.98
CDC42EP4Q9H3Q1 SH3RF3-201ENST00000309415 5803 ntAPPRIS P1 TSL 5 BASIC21.15■□□□□ 0.98
CDC42EP4Q9H3Q1 PARP2-202ENST00000429687 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
CDC42EP4Q9H3Q1 TRABD2A-201ENST00000335459 1844 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
CDC42EP4Q9H3Q1 AL161756.1-202ENST00000359491 1717 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
CDC42EP4Q9H3Q1 IDH1-205ENST00000446179 2298 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CDC42EP4Q9H3Q1 RTN4RL2-201ENST00000335099 2203 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
CDC42EP4Q9H3Q1 BACE2-201ENST00000328735 2824 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
CDC42EP4Q9H3Q1 NUP160-203ENST00000526870 1537 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
CDC42EP4Q9H3Q1 JMJD4-202ENST00000438896 2502 ntTSL 2 BASIC21.14■□□□□ 0.98
CDC42EP4Q9H3Q1 CDO1-201ENST00000250535 1860 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
CDC42EP4Q9H3Q1 ASAP2-202ENST00000315273 5582 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.97
CDC42EP4Q9H3Q1 C16orf70-201ENST00000219139 2865 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
CDC42EP4Q9H3Q1 PITX2-201ENST00000306732 2320 ntAPPRIS P4 TSL 1 (best) BASIC21.14■□□□□ 0.97
CDC42EP4Q9H3Q1 C4orf36-201ENST00000295898 881 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
CDC42EP4Q9H3Q1 AP001107.5-202ENST00000533759 948 ntTSL 5 BASIC21.14■□□□□ 0.97
CDC42EP4Q9H3Q1 SF1-220ENST00000626028 704 ntTSL 2 BASIC21.14■□□□□ 0.97
CDC42EP4Q9H3Q1 CADPS-202ENST00000357948 5190 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.97
CDC42EP4Q9H3Q1 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
CDC42EP4Q9H3Q1 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.97
CDC42EP4Q9H3Q1 MAPK15-201ENST00000338033 1961 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
CDC42EP4Q9H3Q1 BBC3-202ENST00000341983 1538 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
CDC42EP4Q9H3Q1 PPCS-203ENST00000372561 1431 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
CDC42EP4Q9H3Q1 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
CDC42EP4Q9H3Q1 GFRA3-202ENST00000378362 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
CDC42EP4Q9H3Q1 IVD-206ENST00000487418 1809 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
CDC42EP4Q9H3Q1 EYA2-210ENST00000611592 2612 ntTSL 5 BASIC21.13■□□□□ 0.97
CDC42EP4Q9H3Q1 NAA10-208ENST00000464845 1772 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
CDC42EP4Q9H3Q1 PATZ1-201ENST00000215919 2516 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
CDC42EP4Q9H3Q1 FAM213A-202ENST00000372185 1723 ntTSL 2 BASIC21.13■□□□□ 0.97
CDC42EP4Q9H3Q1 AC007249.2-201ENST00000553181 1737 ntTSL 5 BASIC21.13■□□□□ 0.97
CDC42EP4Q9H3Q1 SYTL1-211ENST00000618673 1712 ntTSL 5 BASIC21.13■□□□□ 0.97
CDC42EP4Q9H3Q1 NSUN5-204ENST00000438747 1663 ntAPPRIS P4 TSL 1 (best) BASIC21.13■□□□□ 0.97
CDC42EP4Q9H3Q1 GJD3-201ENST00000578689 885 ntAPPRIS P1 BASIC21.13■□□□□ 0.97
CDC42EP4Q9H3Q1 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC21.13■□□□□ 0.97
CDC42EP4Q9H3Q1 PRMT2-210ENST00000458387 1874 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
CDC42EP4Q9H3Q1 BX005040.4-201ENST00000637145 1518 ntBASIC21.13■□□□□ 0.97
CDC42EP4Q9H3Q1 SH3GL1-206ENST00000598564 2194 ntTSL 2 BASIC21.13■□□□□ 0.97
CDC42EP4Q9H3Q1 GPT-205ENST00000528431 1822 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
CDC42EP4Q9H3Q1 MTCL1-201ENST00000306329 5718 ntAPPRIS ALT2 TSL 5 BASIC21.13■□□□□ 0.97
CDC42EP4Q9H3Q1 HDHD5-201ENST00000155674 1735 ntAPPRIS P3 TSL 1 (best) BASIC21.12■□□□□ 0.97
CDC42EP4Q9H3Q1 SEMA6B-202ENST00000586965 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
CDC42EP4Q9H3Q1 UBAP1-204ENST00000625521 2029 ntTSL 2 BASIC21.12■□□□□ 0.97
CDC42EP4Q9H3Q1 AC055733.4-201ENST00000638462 1354 ntBASIC21.12■□□□□ 0.97
CDC42EP4Q9H3Q1 LONRF3-202ENST00000371628 2550 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
CDC42EP4Q9H3Q1 ME3-202ENST00000393324 2240 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
CDC42EP4Q9H3Q1 AL390879.2-201ENST00000424306 2222 ntTSL 2 BASIC21.12■□□□□ 0.97
CDC42EP4Q9H3Q1 CCDC166-201ENST00000542437 1320 ntAPPRIS P1 TSL 2 BASIC21.12■□□□□ 0.97
CDC42EP4Q9H3Q1 ASCL2-201ENST00000331289 1852 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
CDC42EP4Q9H3Q1 RASGRP1-201ENST00000310803 5023 ntAPPRIS P2 TSL 1 (best) BASIC21.12■□□□□ 0.97
CDC42EP4Q9H3Q1 RASGRP1-204ENST00000539159 5021 ntAPPRIS ALT1 TSL 5 BASIC21.12■□□□□ 0.97
CDC42EP4Q9H3Q1 ANKRD11-217ENST00000613312 1584 ntAPPRIS ALT2 TSL 5 BASIC21.12■□□□□ 0.97
CDC42EP4Q9H3Q1 IGHV3-20-201ENST00000390606 415 ntAPPRIS P1 BASIC21.12■□□□□ 0.97
CDC42EP4Q9H3Q1 C16orf86-201ENST00000403458 1267 ntAPPRIS P2 TSL 1 (best) BASIC21.12■□□□□ 0.97
CDC42EP4Q9H3Q1 CDKN2A-207ENST00000497750 565 ntTSL 4 BASIC21.12■□□□□ 0.97
CDC42EP4Q9H3Q1 TUSC3-209ENST00000509380 1266 ntTSL 5 BASIC21.12■□□□□ 0.97
CDC42EP4Q9H3Q1 AC133561.4-201ENST00000566112 224 ntBASIC21.12■□□□□ 0.97
CDC42EP4Q9H3Q1 LINC02136-201ENST00000567469 530 ntTSL 4 BASIC21.12■□□□□ 0.97
CDC42EP4Q9H3Q1 CDKN2A-212ENST00000578845 678 ntTSL 2 BASIC21.12■□□□□ 0.97
CDC42EP4Q9H3Q1 CXXC5-201ENST00000302517 2658 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
CDC42EP4Q9H3Q1 SLC25A22-216ENST00000531214 1790 ntAPPRIS P1 TSL 2 BASIC21.12■□□□□ 0.97
CDC42EP4Q9H3Q1 MRGPRF-201ENST00000309099 2295 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
CDC42EP4Q9H3Q1 NRXN1-226ENST00000626899 2543 ntTSL 2 BASIC21.12■□□□□ 0.97
CDC42EP4Q9H3Q1 SOCS2-201ENST00000340600 2761 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
CDC42EP4Q9H3Q1 AC099778.1-201ENST00000568593 1911 ntBASIC21.12■□□□□ 0.97
CDC42EP4Q9H3Q1 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC21.12■□□□□ 0.97
CDC42EP4Q9H3Q1 SERBP1-201ENST00000361219 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC21.11■□□□□ 0.97
CDC42EP4Q9H3Q1 OBSL1-214ENST00000603926 5520 ntTSL 5 BASIC21.11■□□□□ 0.97
CDC42EP4Q9H3Q1 COL15A1-205ENST00000610452 5422 ntAPPRIS ALT2 TSL 5 BASIC21.11■□□□□ 0.97
CDC42EP4Q9H3Q1 FAM120A-201ENST00000277165 5118 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
CDC42EP4Q9H3Q1 RARG-204ENST00000543726 1779 ntTSL 2 BASIC21.11■□□□□ 0.97
CDC42EP4Q9H3Q1 TUBA4A-202ENST00000392088 2499 ntTSL 2 BASIC21.11■□□□□ 0.97
CDC42EP4Q9H3Q1 ADRM1-204ENST00000491935 1530 ntAPPRIS P1 TSL 5 BASIC21.11■□□□□ 0.97
CDC42EP4Q9H3Q1 TMEM189-201ENST00000371650 2222 ntAPPRIS ALT1 TSL 1 (best) BASIC21.11■□□□□ 0.97
CDC42EP4Q9H3Q1 TMEM80-201ENST00000397510 1094 ntAPPRIS P2 TSL 5 BASIC21.11■□□□□ 0.97
CDC42EP4Q9H3Q1 RPP21-222ENST00000433076 577 ntTSL 2 BASIC21.11■□□□□ 0.97
CDC42EP4Q9H3Q1 HSD11B1L-201ENST00000301382 1457 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
CDC42EP4Q9H3Q1 SBK1-201ENST00000341901 4992 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
CDC42EP4Q9H3Q1 NSMF-201ENST00000265663 2981 ntAPPRIS P3 TSL 1 (best) BASIC21.11■□□□□ 0.97
CDC42EP4Q9H3Q1 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 22.2 ms