Protein–RNA interactions for Protein: P53999

SUB1, Activated RNA polymerase II transcriptional coactivator p15, humanhuman

Known RBP eCLIP

Length 127 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SUB1P53999 UBE2I-203ENST00000397514 2976 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.012e-9■■■■□ 23.3
SUB1P53999 UBE2I-207ENST00000406620 1842 ntAPPRIS P1 TSL 2 BASIC14.29□□□□□ -0.122e-9■■■■□ 23.3
SUB1P53999 UBE2I-201ENST00000325437 2832 ntAPPRIS P1 TSL 3 BASIC11.68□□□□□ -0.542e-9■■■■□ 23.3
SUB1P53999 UBE2I-206ENST00000403747 1217 ntAPPRIS P1 TSL 5 BASIC11.36□□□□□ -0.592e-9■■■■□ 23.3
SUB1P53999 UBE2I-204ENST00000397515 3109 ntAPPRIS P1 TSL 3 BASIC11.08□□□□□ -0.642e-9■■■■□ 23.3
SUB1P53999 UBE2I-202ENST00000355803 3253 ntAPPRIS P1 TSL 2 BASIC10.55□□□□□ -0.722e-9■■■■□ 23.3
SUB1P53999 SERBP1-204ENST00000370995 3482 ntAPPRIS ALT2 TSL 1 (best) BASIC10.85□□□□□ -0.676e-13■■■■□ 23.3
SUB1P53999 SERBP1-203ENST00000370994 6676 ntAPPRIS P3 TSL 1 (best) BASIC7.72□□□□□ -1.176e-13■■■■□ 23.3
SUB1P53999 ACP1-206ENST00000413140 689 ntTSL 28.72□□□□□ -1.011e-9■■■■□ 23.3
SUB1P53999 ACP1-210ENST00000463831 1015 ntTSL 28.72□□□□□ -1.011e-9■■■■□ 23.3
SUB1P53999 REXO2-201ENST00000265881 1161 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.047e-7■■■■□ 23.3
SUB1P53999 REXO2-208ENST00000539754 791 ntTSL 2 BASIC15.3■□□□□ 0.047e-7■■■■□ 23.3
SUB1P53999 REXO2-213ENST00000543131 539 ntTSL 313.76□□□□□ -0.217e-7■■■■□ 23.3
SUB1P53999 REXO2-220ENST00000611665 1158 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.297e-7■■■■□ 23.3
SUB1P53999 REXO2-206ENST00000539275 710 ntTSL 1 (best) BASIC13.23□□□□□ -0.297e-7■■■■□ 23.3
SUB1P53999 REXO2-205ENST00000539119 664 ntTSL 311.41□□□□□ -0.587e-7■■■■□ 23.3
SUB1P53999 REXO2-204ENST00000538791 1081 ntTSL 27.7□□□□□ -1.187e-7■■■■□ 23.3
SUB1P53999 REXO2-217ENST00000544507 641 ntTSL 34.03□□□□□ -1.767e-7■■■■□ 23.3
SUB1P53999 REXO2-218ENST00000544827 880 ntTSL 3 BASIC2.68□□□□□ -1.987e-7■■■■□ 23.3
SUB1P53999 REXO2-203ENST00000538403 753 ntTSL 22.34□□□□□ -2.037e-7■■■■□ 23.3
SUB1P53999 REXO2-219ENST00000546316 726 ntTSL 32.24□□□□□ -2.057e-7■■■■□ 23.3
SUB1P53999 REXO2-209ENST00000539788 626 ntTSL 31.92□□□□□ -2.17e-7■■■■□ 23.3
SUB1P53999 COX5A-203ENST00000564811 568 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.441e-10■■■■□ 23.3
SUB1P53999 AP2A1-208ENST00000601356 2238 nt18.69■□□□□ 0.582e-6■■■■□ 23.3
SUB1P53999 AP2A1-202ENST00000359032 3286 ntAPPRIS P4 TSL 5 BASIC9.37□□□□□ -0.912e-6■■■■□ 23.3
SUB1P53999 AP2A1-201ENST00000354293 3388 ntAPPRIS ALT1 TSL 1 (best) BASIC9.28□□□□□ -0.922e-6■■■■□ 23.3
SUB1P53999 NDUFS3-205ENST00000527178 269 ntTSL 26.83□□□□□ -1.324e-12■■■■□ 23.3
SUB1P53999 DHCR24-201ENST00000371269 4250 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.462e-7■■■■□ 23.2
SUB1P53999 DHCR24-203ENST00000535035 4153 ntTSL 1 (best) BASIC8.78□□□□□ -12e-7■■■■□ 23.2
SUB1P53999 SUPT6H-201ENST00000314616 6523 ntAPPRIS P1 TSL 1 (best) BASIC7.18□□□□□ -1.262e-10■■■■□ 23.2
SUB1P53999 RAB11A-203ENST00000564910 978 ntTSL 2 BASIC7.89□□□□□ -1.157e-7■■■■□ 23.2
SUB1P53999 RAB11A-201ENST00000261890 4930 ntAPPRIS P1 TSL 1 (best) BASIC6.96□□□□□ -1.297e-7■■■■□ 23.2
SUB1P53999 RAB11A-209ENST00000569896 1396 ntTSL 2 BASIC6.24□□□□□ -1.417e-7■■■■□ 23.2
SUB1P53999 BIRC5-203ENST00000374948 2446 ntTSL 1 (best) BASIC11.95□□□□□ -0.57e-8■■■■□ 23.1
SUB1P53999 BIRC5-202ENST00000350051 2630 ntAPPRIS P1 TSL 1 (best) BASIC10.51□□□□□ -0.737e-8■■■■□ 23.1
SUB1P53999 BIRC5-201ENST00000301633 2711 ntTSL 1 (best) BASIC10.3□□□□□ -0.767e-8■■■■□ 23.1
SUB1P53999 LCP1-202ENST00000398576 3944 ntAPPRIS P1 TSL 5 BASIC5.44□□□□□ -1.544e-8■■■■□ 23.1
SUB1P53999 LCP1-201ENST00000323076 3787 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.64e-8■■■■□ 23.1
SUB1P53999 HSPA9-201ENST00000297185 3321 ntAPPRIS P1 TSL 1 (best) BASIC8.37□□□□□ -1.072e-7■■■■□ 23.1
SUB1P53999 HSPA9-202ENST00000501917 275 ntTSL 32.19□□□□□ -2.062e-7■■■■□ 23.1
SUB1P53999 CYCS-201ENST00000305786 4098 ntAPPRIS P1 TSL 1 (best) BASIC6.78□□□□□ -1.321e-7■■■■□ 23.1
SUB1P53999 AMFR-211ENST00000568657 539 ntTSL 417.04■□□□□ 0.325e-6■■■■□ 23.1
SUB1P53999 AMFR-206ENST00000565445 803 ntTSL 515.2■□□□□ 0.025e-6■■■■□ 23.1
SUB1P53999 AMFR-204ENST00000563664 567 ntTSL 47.63□□□□□ -1.195e-6■■■■□ 23.1
SUB1P53999 AMFR-205ENST00000564283 550 ntTSL 45.05□□□□□ -1.65e-6■■■■□ 23.1
SUB1P53999 HMGB2-203ENST00000446922 1175 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.559e-31■■■■□ 23.1
SUB1P53999 HMGB2-205ENST00000511316 1841 ntTSL 210.41□□□□□ -0.749e-31■■■■□ 23.1
SUB1P53999 HMGB2-201ENST00000296503 1889 ntAPPRIS P1 TSL 1 (best) BASIC9.21□□□□□ -0.939e-31■■■■□ 23.1
SUB1P53999 HMGB2-202ENST00000438704 1032 ntAPPRIS P1 TSL 1 (best) BASIC6.08□□□□□ -1.449e-31■■■■□ 23.1
SUB1P53999 MARCH5-201ENST00000358935 3926 ntAPPRIS P1 TSL 1 (best) BASIC10.57□□□□□ -0.725e-8■■■■□ 23.1
SUB1P53999 BCCIP-203ENST00000368759 1433 ntTSL 1 (best) BASIC9.37□□□□□ -0.911e-7■■■■□ 23.1
SUB1P53999 CALU-205ENST00000535011 3210 ntTSL 1 (best) BASIC13.11□□□□□ -0.314e-8■■■■□ 23
SUB1P53999 CALU-201ENST00000249364 3357 ntAPPRIS P3 TSL 1 (best) BASIC9.58□□□□□ -0.884e-8■■■■□ 23
SUB1P53999 CALU-206ENST00000542996 4225 ntTSL 1 (best) BASIC7.97□□□□□ -1.134e-8■■■■□ 23
SUB1P53999 CALU-204ENST00000493278 589 ntTSL 34.07□□□□□ -1.764e-8■■■■□ 23
SUB1P53999 FLII-216ENST00000577398 926 ntTSL 213□□□□□ -0.332e-7■■■■□ 23
SUB1P53999 FLII-227ENST00000581858 644 ntTSL 513□□□□□ -0.332e-7■■■■□ 23
SUB1P53999 FLII-221ENST00000578558 2377 ntTSL 5 BASIC12.65□□□□□ -0.382e-7■■■■□ 23
SUB1P53999 FLII-201ENST00000327031 4338 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.392e-7■■■■□ 23
SUB1P53999 SYNCRIP-201ENST00000355238 6449 ntAPPRIS ALT1 TSL 1 (best) BASIC11.55□□□□□ -0.565e-6■■■■□ 23
SUB1P53999 FLII-220ENST00000578101 4148 ntTSL 29.42□□□□□ -0.92e-7■■■■□ 23
SUB1P53999 AL589666.1-201ENST00000503906 835 ntAPPRIS P1 TSL 5 BASIC9.35□□□□□ -0.915e-6■■■■□ 23
SUB1P53999 CYB5B-204ENST00000515314 1658 ntTSL 5 BASIC9.06□□□□□ -0.963e-6■■■■□ 23
SUB1P53999 FLII-215ENST00000545457 3975 ntTSL 2 BASIC8.53□□□□□ -1.042e-7■■■■□ 23
SUB1P53999 FLNB-211ENST00000484981 932 ntTSL 58.12□□□□□ -1.112e-7■■■■□ 23
SUB1P53999 CYB5B-202ENST00000512062 4358 ntAPPRIS P1 TSL 1 (best) BASIC7.56□□□□□ -1.23e-6■■■■□ 23
SUB1P53999 CYB5B-201ENST00000307892 4286 ntTSL 1 (best) BASIC5.88□□□□□ -1.473e-6■■■■□ 23
SUB1P53999 SYNCRIP-204ENST00000616122 6764 ntTSL 1 (best) BASIC4.74□□□□□ -1.655e-6■■■■□ 23
SUB1P53999 NEDD8-201ENST00000250495 708 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.086e-8■■■■□ 23
SUB1P53999 NEDD8-MDP1-204ENST00000605847 758 ntTSL 510.82□□□□□ -0.686e-8■■■■□ 23
SUB1P53999 NEDD8-MDP1-203ENST00000604306 681 ntTSL 59.85□□□□□ -0.836e-8■■■■□ 23
SUB1P53999 NEDD8-205ENST00000527046 847 ntTSL 28.24□□□□□ -1.096e-8■■■■□ 23
SUB1P53999 NEDD8-202ENST00000396828 626 ntTSL 27.96□□□□□ -1.146e-8■■■■□ 23
SUB1P53999 NEDD8-MDP1-202ENST00000534348 595 ntAPPRIS P1 TSL 5 BASIC6.82□□□□□ -1.326e-8■■■■□ 23
SUB1P53999 NEDD8-MDP1-201ENST00000530579 471 ntTSL 26.73□□□□□ -1.336e-8■■■■□ 23
SUB1P53999 NEDD8-206ENST00000531430 651 ntTSL 26.61□□□□□ -1.356e-8■■■■□ 23
SUB1P53999 SEC31A-205ENST00000395310 4259 ntAPPRIS P4 TSL 1 (best) BASIC11.02□□□□□ -0.656e-18■■■■□ 22.9
SUB1P53999 SEC31A-208ENST00000448323 4255 ntAPPRIS P4 TSL 5 BASIC10.47□□□□□ -0.736e-18■■■■□ 22.9
SUB1P53999 SEC31A-202ENST00000311785 3909 ntAPPRIS ALT2 TSL 1 (best) BASIC10.34□□□□□ -0.756e-18■■■■□ 22.9
SUB1P53999 SEC31A-228ENST00000509142 3861 ntAPPRIS ALT2 TSL 5 BASIC8.9□□□□□ -0.996e-18■■■■□ 22.9
SUB1P53999 SEC31A-213ENST00000503937 1564 ntTSL 1 (best)6.2□□□□□ -1.426e-18■■■■□ 22.9
SUB1P53999 SEC31A-207ENST00000443462 4042 ntTSL 2 BASIC5.19□□□□□ -1.586e-18■■■■□ 22.9
SUB1P53999 SEC31A-209ENST00000500777 3610 ntTSL 5 BASIC4.32□□□□□ -1.726e-18■■■■□ 22.9
SUB1P53999 SEC31A-237ENST00000513858 3687 ntTSL 1 (best) BASIC3.53□□□□□ -1.846e-18■■■■□ 22.9
SUB1P53999 SEC31A-203ENST00000348405 4012 ntAPPRIS ALT2 TSL 1 (best) BASIC3.41□□□□□ -1.866e-18■■■■□ 22.9
SUB1P53999 SEC31A-215ENST00000505472 4159 ntTSL 5 BASIC2.91□□□□□ -1.946e-18■■■■□ 22.9
SUB1P53999 SAE1-209ENST00000598840 1831 ntTSL 5 BASIC19.62■□□□□ 0.737e-8■■■■□ 22.9
SUB1P53999 SAE1-203ENST00000413379 2313 ntTSL 2 BASIC16.31■□□□□ 0.27e-8■■■■□ 22.9
SUB1P53999 SAE1-207ENST00000596995 2106 ntTSL 215.34■□□□□ 0.057e-8■■■■□ 22.9
SUB1P53999 SAE1-201ENST00000270225 2049 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.017e-8■■■■□ 22.9
SUB1P53999 SAE1-204ENST00000414294 2211 ntTSL 215.02■□□□□ -07e-8■■■■□ 22.9
SUB1P53999 SAE1-202ENST00000392776 1851 ntTSL 3 BASIC12.96□□□□□ -0.337e-8■■■■□ 22.9
SUB1P53999 COPZ1-207ENST00000549116 736 ntTSL 2 BASIC9.51□□□□□ -0.899e-13■■■■□ 22.9
SUB1P53999 COPZ1-204ENST00000548281 554 ntTSL 49.03□□□□□ -0.969e-13■■■■□ 22.9
SUB1P53999 COPZ1-206ENST00000549043 1232 ntTSL 1 (best) BASIC9.01□□□□□ -0.979e-13■■■■□ 22.9
SUB1P53999 COPZ1-213ENST00000551962 578 ntTSL 58.83□□□□□ -19e-13■■■■□ 22.9
SUB1P53999 COPZ1-202ENST00000455864 880 ntTSL 2 BASIC8.83□□□□□ -19e-13■■■■□ 22.9
SUB1P53999 COPZ1-216ENST00000552848 537 ntTSL 57.82□□□□□ -1.169e-13■■■■□ 22.9
SUB1P53999 COPZ1-214ENST00000552218 797 ntTSL 5 BASIC7.66□□□□□ -1.189e-13■■■■□ 22.9
SUB1P53999 COPZ1-212ENST00000551779 1462 ntAPPRIS ALT1 TSL 2 BASIC7.43□□□□□ -1.229e-13■■■■□ 22.9
Retrieved 100 of 11,644 protein–RNA pairs in 113.2 ms