Protein–RNA interactions for Protein: O60508

CDC40, Pre-mRNA-processing factor 17, humanhuman

Known RBP eCLIP

Length 579 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDC40O60508 STAU1-202ENST00000347458 3136 ntAPPRIS ALT2 TSL 1 (best) BASIC9.93□□□□□ -0.822e-7■□□□□ 8.4
CDC40O60508 STAU1-204ENST00000371792 3130 ntAPPRIS ALT2 TSL 5 BASIC9.93□□□□□ -0.822e-7■□□□□ 8.4
CDC40O60508 PRR7-AS1-201ENST00000425316 741 ntTSL 3 BASIC9.92□□□□□ -0.822e-7■□□□□ 8.4
CDC40O60508 SRRM2-224ENST00000575870 696 ntTSL 39.72□□□□□ -0.852e-7■□□□□ 8.4
CDC40O60508 STAU1-201ENST00000340954 3334 ntAPPRIS ALT2 TSL 5 BASIC9.68□□□□□ -0.862e-7■□□□□ 8.4
CDC40O60508 STAU1-207ENST00000371856 3684 ntAPPRIS P4 TSL 1 (best) BASIC9.25□□□□□ -0.932e-7■□□□□ 8.4
CDC40O60508 STAU1-206ENST00000371828 3411 ntAPPRIS ALT2 TSL 1 (best) BASIC8.97□□□□□ -0.972e-7■□□□□ 8.4
CDC40O60508 PRR7-AS1-202ENST00000506465 421 ntTSL 35.8□□□□□ -1.482e-7■□□□□ 8.4
CDC40O60508 PSME4-208ENST00000481518 886 ntTSL 521.26■□□□□ 0.995e-15■□□□□ 8.3
CDC40O60508 PSME4-201ENST00000389993 6581 ntTSL 1 (best)14.07□□□□□ -0.165e-15■□□□□ 8.3
CDC40O60508 PSME4-202ENST00000404125 7099 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.265e-15■□□□□ 8.3
CDC40O60508 SLC13A5-207ENST00000572727 618 ntTSL 213.33□□□□□ -0.285e-15■□□□□ 8.3
CDC40O60508 MIDN-201ENST00000300952 3790 ntAPPRIS P2 TSL 5 BASIC15.35■□□□□ 0.052e-7■□□□□ 8.3
CDC40O60508 TRPC4AP-202ENST00000451813 3138 ntTSL 2 BASIC15.32■□□□□ 0.042e-7■□□□□ 8.3
CDC40O60508 TRPC4AP-201ENST00000252015 3226 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.132e-7■□□□□ 8.3
CDC40O60508 SMURF2P1-202ENST00000579301 570 ntTSL 5 BASIC9.42□□□□□ -0.92e-7■□□□□ 8.3
CDC40O60508 AC005562.1-202ENST00000398849 1411 ntTSL 27.88□□□□□ -1.152e-7■□□□□ 8.3
CDC40O60508 KMT2D-201ENST00000301067 19419 ntAPPRIS P1 TSL 5 BASIC5.39□□□□□ -1.552e-7■□□□□ 8.3
CDC40O60508 SMURF2P1-201ENST00000514992 481 ntBASIC1.87□□□□□ -2.112e-7■□□□□ 8.3
CDC40O60508 UBE2J2-207ENST00000435198 1056 ntTSL 324.39■■□□□ 1.492e-8■□□□□ 8.3
CDC40O60508 UBE2J2-202ENST00000349431 1733 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.122e-8■□□□□ 8.3
CDC40O60508 UBE2J2-210ENST00000464036 1256 ntTSL 321.59■■□□□ 1.052e-8■□□□□ 8.3
CDC40O60508 EHBP1-204ENST00000405482 1311 ntTSL 220.82■□□□□ 0.922e-8■□□□□ 8.3
CDC40O60508 UBE2J2-203ENST00000360466 1047 ntAPPRIS P1 TSL 2 BASIC19.95■□□□□ 0.782e-8■□□□□ 8.3
CDC40O60508 UBE2J2-209ENST00000461142 837 ntTSL 319.84■□□□□ 0.772e-8■□□□□ 8.3
CDC40O60508 UBE2J2-208ENST00000450390 2455 ntTSL 519.8■□□□□ 0.762e-8■□□□□ 8.3
CDC40O60508 UBE2J2-214ENST00000473215 1028 ntTSL 319.66■□□□□ 0.742e-8■□□□□ 8.3
CDC40O60508 UBE2J2-206ENST00000422076 643 ntTSL 519.55■□□□□ 0.722e-8■□□□□ 8.3
CDC40O60508 UBE2J2-219ENST00000503294 814 ntTSL 419.55■□□□□ 0.722e-8■□□□□ 8.3
CDC40O60508 UBE2J2-201ENST00000347370 2387 ntTSL 3 BASIC19■□□□□ 0.632e-8■□□□□ 8.3
CDC40O60508 EHBP1-209ENST00000431489 5076 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.552e-8■□□□□ 8.3
CDC40O60508 NOP56-201ENST00000329276 2400 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.412e-8■□□□□ 8.3
CDC40O60508 UBE2J2-220ENST00000509720 472 ntTSL 317.58■□□□□ 0.42e-8■□□□□ 8.3
CDC40O60508 UBE2J2-211ENST00000466752 886 ntTSL 317.45■□□□□ 0.382e-8■□□□□ 8.3
CDC40O60508 UBE2J2-217ENST00000491779 611 ntTSL 217.45■□□□□ 0.382e-8■□□□□ 8.3
CDC40O60508 UBE2J2-216ENST00000488418 750 ntTSL 217.31■□□□□ 0.362e-8■□□□□ 8.3
CDC40O60508 UBE2J2-205ENST00000400930 1021 ntTSL 5 BASIC16.68■□□□□ 0.262e-8■□□□□ 8.3
CDC40O60508 UBE2J2-204ENST00000400929 1057 ntTSL 3 BASIC15.89■□□□□ 0.132e-8■□□□□ 8.3
CDC40O60508 UBE2J2-218ENST00000502382 530 ntTSL 414.89□□□□□ -0.032e-8■□□□□ 8.3
CDC40O60508 UBE2J2-215ENST00000477894 767 ntTSL 514.64□□□□□ -0.072e-8■□□□□ 8.3
CDC40O60508 NOP56-220ENST00000616692 2662 ntTSL 1 (best)13.88□□□□□ -0.192e-8■□□□□ 8.3
CDC40O60508 NOP56-216ENST00000492135 1143 ntTSL 1 (best)13.08□□□□□ -0.322e-8■□□□□ 8.3
CDC40O60508 NOP56-219ENST00000612233 2980 nt12.58□□□□□ -0.42e-8■□□□□ 8.3
CDC40O60508 MAGED1-201ENST00000326587 2747 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.552e-8■□□□□ 8.3
CDC40O60508 NOP56-206ENST00000466447 1094 ntTSL 211.05□□□□□ -0.642e-8■□□□□ 8.3
CDC40O60508 MAGED1-209ENST00000485420 2906 ntTSL 510.95□□□□□ -0.662e-8■□□□□ 8.3
CDC40O60508 MAGED1-203ENST00000375722 2806 ntAPPRIS P1 TSL 5 BASIC10.82□□□□□ -0.682e-8■□□□□ 8.3
CDC40O60508 MAGED1-202ENST00000375695 2875 ntTSL 1 (best) BASIC10.53□□□□□ -0.722e-8■□□□□ 8.3
CDC40O60508 MAGED1-210ENST00000494718 5418 ntTSL 29.96□□□□□ -0.812e-8■□□□□ 8.3
CDC40O60508 EHBP1-201ENST00000263991 5165 ntAPPRIS P3 TSL 1 (best) BASIC9.2□□□□□ -0.942e-8■□□□□ 8.3
CDC40O60508 EHBP1-205ENST00000413434 533 ntTSL 49□□□□□ -0.972e-8■□□□□ 8.3
CDC40O60508 MAGED1-204ENST00000375772 2701 ntAPPRIS P1 TSL 5 BASIC8.95□□□□□ -0.982e-8■□□□□ 8.3
CDC40O60508 NOP56-202ENST00000415272 1628 ntTSL 58.91□□□□□ -0.982e-8■□□□□ 8.3
CDC40O60508 NOP56-205ENST00000462630 859 ntTSL 28.63□□□□□ -1.032e-8■□□□□ 8.3
CDC40O60508 EHBP1-217ENST00000472809 1374 ntTSL 58.59□□□□□ -1.032e-8■□□□□ 8.3
CDC40O60508 NOP56-208ENST00000467857 735 ntTSL 28.4□□□□□ -1.062e-8■□□□□ 8.3
CDC40O60508 EHBP1-211ENST00000449820 539 ntTSL 58.19□□□□□ -1.12e-8■□□□□ 8.3
CDC40O60508 NOP56-207ENST00000467196 1320 ntTSL 57.99□□□□□ -1.132e-8■□□□□ 8.3
CDC40O60508 EHBP1-207ENST00000426940 586 ntTSL 47.37□□□□□ -1.232e-8■□□□□ 8.3
CDC40O60508 EHBP1-208ENST00000427809 581 ntTSL 45.01□□□□□ -1.612e-8■□□□□ 8.3
CDC40O60508 EHBP1-202ENST00000405015 4108 ntAPPRIS ALT2 TSL 2 BASIC4.73□□□□□ -1.652e-8■□□□□ 8.3
CDC40O60508 EHBP1-219ENST00000494958 1127 ntTSL 1 (best)4.58□□□□□ -1.682e-8■□□□□ 8.3
CDC40O60508 FREM1-202ENST00000380880 7324 ntAPPRIS P1 TSL 5 BASIC9.62□□□□□ -0.877e-10■□□□□ 8.3
CDC40O60508 FREM1-204ENST00000422223 10086 ntAPPRIS P1 TSL 5 BASIC9.56□□□□□ -0.887e-10■□□□□ 8.3
CDC40O60508 FREM1-201ENST00000380875 6126 ntTSL 1 (best)9.15□□□□□ -0.947e-10■□□□□ 8.3
CDC40O60508 FREM1-203ENST00000380894 2481 ntTSL 1 (best) BASIC8.22□□□□□ -1.097e-10■□□□□ 8.3
CDC40O60508 FREM1-205ENST00000427623 1421 ntTSL 58.04□□□□□ -1.127e-10■□□□□ 8.3
CDC40O60508 DCDC2-202ENST00000378454 4707 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.434e-21■□□□□ 8.3
CDC40O60508 SLC38A2-213ENST00000553252 846 ntTSL 215.65■□□□□ 0.12e-12■□□□□ 8.3
CDC40O60508 SLC38A2-210ENST00000551405 526 ntTSL 415.47■□□□□ 0.072e-12■□□□□ 8.3
CDC40O60508 SLC38A2-201ENST00000256689 4888 ntAPPRIS P1 TSL 1 (best) BASIC8.68□□□□□ -1.022e-12■□□□□ 8.3
CDC40O60508 SLC38A2-203ENST00000547252 847 ntTSL 37.83□□□□□ -1.162e-12■□□□□ 8.3
CDC40O60508 SLC38A2-208ENST00000549258 4384 ntTSL 23.72□□□□□ -1.812e-12■□□□□ 8.3
CDC40O60508 NCL-205ENST00000453992 964 ntTSL 417.55■□□□□ 0.48e-15■□□□□ 8.3
CDC40O60508 NCL-203ENST00000417652 568 ntTSL 46.35□□□□□ -1.398e-15■□□□□ 8.3
CDC40O60508 NCL-206ENST00000454824 606 ntTSL 36.35□□□□□ -1.398e-15■□□□□ 8.3
CDC40O60508 NCL-204ENST00000436894 562 ntTSL 44.04□□□□□ -1.768e-15■□□□□ 8.3
CDC40O60508 ENC1-203ENST00000509127 584 ntTSL 318.63■□□□□ 0.572e-9■□□□□ 8.3
CDC40O60508 ENC1-202ENST00000508331 1405 ntTSL 417.81■□□□□ 0.442e-9■□□□□ 8.3
CDC40O60508 ASPSCR1-221ENST00000585274 984 ntTSL 516.74■□□□□ 0.272e-9■□□□□ 8.3
CDC40O60508 ASPSCR1-218ENST00000583744 539 ntTSL 414.32□□□□□ -0.122e-9■□□□□ 8.3
CDC40O60508 ASPSCR1-206ENST00000578361 590 ntTSL 213.96□□□□□ -0.172e-9■□□□□ 8.3
CDC40O60508 ASPSCR1-217ENST00000583693 3976 ntTSL 212.04□□□□□ -0.482e-9■□□□□ 8.3
CDC40O60508 ENC1-206ENST00000537006 2024 ntAPPRIS P1 TSL 5 BASIC11.59□□□□□ -0.552e-9■□□□□ 8.3
CDC40O60508 HNRNPU-225ENST00000640119 461 ntTSL 510.75□□□□□ -0.692e-9■□□□□ 8.3
CDC40O60508 HNRNPU-221ENST00000639824 1450 ntTSL 510.33□□□□□ -0.762e-9■□□□□ 8.3
CDC40O60508 ASPSCR1-215ENST00000583142 532 ntTSL 310.08□□□□□ -0.82e-9■□□□□ 8.3
CDC40O60508 HNRNPU-227ENST00000640264 328 ntTSL 39.8□□□□□ -0.842e-9■□□□□ 8.3
CDC40O60508 HNRNPU-218ENST00000639064 2625 ntTSL 58.28□□□□□ -1.082e-9■□□□□ 8.3
CDC40O60508 HNRNPU-208ENST00000475997 5290 ntTSL 56.27□□□□□ -1.412e-9■□□□□ 8.3
CDC40O60508 HNRNPA3-205ENST00000483137 627 ntTSL 27.96□□□□□ -1.142e-10■□□□□ 8.2
CDC40O60508 RNF4-207ENST00000506706 2098 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.831e-6■□□□□ 8.2
CDC40O60508 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.781e-6■□□□□ 8.2
CDC40O60508 ZNF580-206ENST00000592881 1019 ntTSL 319.74■□□□□ 0.751e-6■□□□□ 8.2
CDC40O60508 HNRNPUL2-BSCL2-201ENST00000403734 4001 ntAPPRIS P1 TSL 2 BASIC15.7■□□□□ 0.11e-6■□□□□ 8.2
CDC40O60508 ROBO1-209ENST00000495273 5600 ntAPPRIS P3 TSL 1 (best) BASIC15.07■□□□□ 02e-8■□□□□ 8.2
CDC40O60508 HPRT1-202ENST00000462974 724 ntTSL 314.56□□□□□ -0.081e-6■□□□□ 8.2
CDC40O60508 EML4-201ENST00000318522 5549 ntAPPRIS P3 TSL 1 (best) BASIC14.46□□□□□ -0.095e-11■□□□□ 8.2
CDC40O60508 RNF4-213ENST00000509388 569 ntTSL 313.5□□□□□ -0.251e-6■□□□□ 8.2
CDC40O60508 EML4-203ENST00000402711 3568 ntAPPRIS ALT2 TSL 1 (best) BASIC13.37□□□□□ -0.275e-11■□□□□ 8.2
Retrieved 100 of 5,364 protein–RNA pairs in 23.4 ms