RNA–Protein interactions for RNA: ENST00000380875.7

FREM1-201, Transcript of FRAS1 related extracellular matrix 1, humanhuman

TSL 1 (best)

Gene FREM1, Length 6,126 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
FREM1-201ENST00000380875 DCAF8L2P0C7V8 631 aa16.55■□□□□ 0.24
FREM1-201ENST00000380875 SUPT5HO00267 1087 aaKnown RBP15.1■□□□□ 0.01
FREM1-201ENST00000380875 EHMT2Q96KQ7 1210 aa15.07■□□□□ 0
FREM1-201ENST00000380875 FAM9AQ8IZU1 332 aaPredicted RBP14.91□□□□□ -0.02
FREM1-201ENST00000380875 SHROOM4Q9ULL8 1493 aa14.89□□□□□ -0.03
FREM1-201ENST00000380875 APLP2Q06481 763 aa14.73□□□□□ -0.05
FREM1-201ENST00000380875 NISCHQ9Y2I1 1504 aa14.53□□□□□ -0.08
FREM1-201ENST00000380875 RANGAP1P46060 587 aaPredicted RBP14.51□□□□□ -0.09
FREM1-201ENST00000380875 ATP1B4Q9UN42 357 aaPredicted RBP14.49□□□□□ -0.09
FREM1-201ENST00000380875 TTBK1Q5TCY1 1321 aaPredicted RBP14.49□□□□□ -0.09
FREM1-201ENST00000380875 PELP1Q8IZL8 1130 aaKnown RBP14.38□□□□□ -0.11
FREM1-201ENST00000380875 MYT1LQ9UL68 1186 aa14.25□□□□□ -0.13
FREM1-201ENST00000380875 CHIC1Q5VXU3 224 aa14.04□□□□□ -0.16
FREM1-201ENST00000380875 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.02□□□□□ -0.17
FREM1-201ENST00000380875 HNRNPUL2Q1KMD3 747 aaKnown RBP14.02□□□□□ -0.17
FREM1-201ENST00000380875 UBTFP17480 764 aaKnown RBP14.01□□□□□ -0.17
FREM1-201ENST00000380875 PCGF6Q9BYE7 350 aa13.97□□□□□ -0.17
FREM1-201ENST00000380875 TRIM41Q8WV44 630 aa13.94□□□□□ -0.18
FREM1-201ENST00000380875 ERICH6Q7L0X2 663 aa13.93□□□□□ -0.18
FREM1-201ENST00000380875 CCER1Q8TC90 406 aaPredicted RBP13.8□□□□□ -0.2
FREM1-201ENST00000380875 POLR3GLQ9BT43 218 aa13.79□□□□□ -0.2
FREM1-201ENST00000380875 SLC4A1APQ9BWU0 796 aaKnown RBP13.77□□□□□ -0.2
FREM1-201ENST00000380875 ITGAEP38570 1179 aa13.68□□□□□ -0.22
FREM1-201ENST00000380875 NEFLP07196 543 aa13.63□□□□□ -0.23
FREM1-201ENST00000380875 CNGB1Q14028 1251 aaPredicted RBP13.62□□□□□ -0.23
FREM1-201ENST00000380875 PPARGC1BQ86YN6 1023 aaKnown RBP13.62□□□□□ -0.23
FREM1-201ENST00000380875 CENPBP07199 599 aaPredicted RBP13.57□□□□□ -0.24
FREM1-201ENST00000380875 YTHDC1Q96MU7 727 aaKnown RBP13.56□□□□□ -0.24
FREM1-201ENST00000380875 FBLN2P98095 1184 aa13.5□□□□□ -0.25
FREM1-201ENST00000380875 BCANQ96GW7 911 aa13.47□□□□□ -0.25
FREM1-201ENST00000380875 ZEB1P37275 1124 aaPredicted RBP13.47□□□□□ -0.25
FREM1-201ENST00000380875 DAXXQ9UER7 740 aaPredicted RBP13.46□□□□□ -0.26
FREM1-201ENST00000380875 PABPN1Q86U42 306 aaKnown RBP eCLIP13.43□□□□□ -0.267e-8■□□□□ 11.1
FREM1-201ENST00000380875 SLC24A1O60721 1099 aa13.4□□□□□ -0.26
FREM1-201ENST00000380875 PLPPR3Q6T4P5 718 aa13.39□□□□□ -0.27
FREM1-201ENST00000380875 ABCC9O60706 1549 aa13.34□□□□□ -0.27
FREM1-201ENST00000380875 TRIM52Q96A61 297 aa13.31□□□□□ -0.28
FREM1-201ENST00000380875 FAM50AQ14320 339 aaKnown RBP13.29□□□□□ -0.28
FREM1-201ENST00000380875 ESF1Q9H501 851 aaKnown RBP13.26□□□□□ -0.29
FREM1-201ENST00000380875 CLSPNQ9HAW4 1339 aa13.24□□□□□ -0.29
FREM1-201ENST00000380875 ZNF326Q5BKZ1 582 aaKnown RBP13.2□□□□□ -0.3
FREM1-201ENST00000380875 MYT1Q01538 1121 aa13.19□□□□□ -0.3
FREM1-201ENST00000380875 ARID3CA6NKF2 412 aa13.18□□□□□ -0.3
FREM1-201ENST00000380875 BCL11AQ9H165 835 aa13.17□□□□□ -0.3
FREM1-201ENST00000380875 ZBTB47Q9UFB7 747 aaPredicted RBP13.14□□□□□ -0.31
FREM1-201ENST00000380875 ZNF316A6NFI3 1004 aaPredicted RBP13.12□□□□□ -0.31
FREM1-201ENST00000380875 STAG3Q9UJ98 1225 aa13.1□□□□□ -0.31
FREM1-201ENST00000380875 NEUROD1Q13562 356 aa13.07□□□□□ -0.32
FREM1-201ENST00000380875 NPM1P06748 294 aaKnown RBP eCLIP13.07□□□□□ -0.32
FREM1-201ENST00000380875 NEFMP07197 916 aa13.07□□□□□ -0.32
FREM1-201ENST00000380875 ZNF777Q9ULD5 760 aaPredicted RBP13.05□□□□□ -0.32
FREM1-201ENST00000380875 SCAF1Q9H7N4 1312 aaKnown RBP13.04□□□□□ -0.32
FREM1-201ENST00000380875 TRIM26Q12899 539 aaPredicted RBP13.02□□□□□ -0.32
FREM1-201ENST00000380875 CHGAP10645 457 aaKnown RBP13.01□□□□□ -0.33
FREM1-201ENST00000380875 A0A0G2JS52 829 aa13□□□□□ -0.33
FREM1-201ENST00000380875 P3H3Q8IVL6 736 aa13□□□□□ -0.33
FREM1-201ENST00000380875 CANXP27824 592 aaKnown RBP12.99□□□□□ -0.33
FREM1-201ENST00000380875 LOC105371045A0A1W2PR82 267 aa12.98□□□□□ -0.33
FREM1-201ENST00000380875 PLEKHG5O94827 1062 aa12.88□□□□□ -0.35
FREM1-201ENST00000380875 ZBTB7CA1YPR0 619 aa12.85□□□□□ -0.35
FREM1-201ENST00000380875 CDK11AQ9UQ88 783 aaPredicted RBP12.83□□□□□ -0.36
FREM1-201ENST00000380875 RTL5Q5HYW3 569 aaPredicted RBP12.82□□□□□ -0.36
FREM1-201ENST00000380875 C14orf37Q86TY3 774 aa12.79□□□□□ -0.36
FREM1-201ENST00000380875 SENP3Q9H4L4 574 aaPredicted RBP12.78□□□□□ -0.36
FREM1-201ENST00000380875 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.76□□□□□ -0.378e-9■■□□□ 12.1
FREM1-201ENST00000380875 HAP1P54257 671 aaPredicted RBP12.76□□□□□ -0.37
FREM1-201ENST00000380875 ANP32CO43423 234 aa12.76□□□□□ -0.37
FREM1-201ENST00000380875 ARID4BQ4LE39 1312 aaPredicted RBP12.76□□□□□ -0.37
FREM1-201ENST00000380875 HRCP23327 699 aa12.75□□□□□ -0.37
FREM1-201ENST00000380875 NPM2Q86SE8 214 aaKnown RBP12.71□□□□□ -0.37
FREM1-201ENST00000380875 PPP1R15AO75807 674 aaPredicted RBP12.68□□□□□ -0.38
FREM1-201ENST00000380875 CHMP7Q8WUX9 453 aaPredicted RBP12.68□□□□□ -0.38
FREM1-201ENST00000380875 TRHP20396 242 aaPredicted RBP12.68□□□□□ -0.38
FREM1-201ENST00000380875 DIEXFQ68CQ4 756 aaKnown RBP12.62□□□□□ -0.39
FREM1-201ENST00000380875 KCNH8Q96L42 1107 aa12.61□□□□□ -0.39
FREM1-201ENST00000380875 ARXQ96QS3 562 aa12.6□□□□□ -0.39
FREM1-201ENST00000380875 SCRIBQ14160 1630 aa12.57□□□□□ -0.4
FREM1-201ENST00000380875 CHIC2Q9UKJ5 165 aa12.56□□□□□ -0.4
FREM1-201ENST00000380875 NPHP1O15259 732 aa12.54□□□□□ -0.4
FREM1-201ENST00000380875 HSP90AA1P07900 732 aaKnown RBP12.53□□□□□ -0.4
FREM1-201ENST00000380875 LMOD2Q6P5Q4 547 aa12.52□□□□□ -0.41
FREM1-201ENST00000380875 KDM2AQ9Y2K7 1162 aa12.52□□□□□ -0.41
FREM1-201ENST00000380875 TSPY4P0CV99 314 aa12.51□□□□□ -0.41
FREM1-201ENST00000380875 TSPY10P0CW01 314 aa12.51□□□□□ -0.41
FREM1-201ENST00000380875 CDK11BP21127 795 aaKnown RBP12.5□□□□□ -0.41
FREM1-201ENST00000380875 SALL2Q9Y467 1007 aaPredicted RBP12.49□□□□□ -0.41
FREM1-201ENST00000380875 ERCC6Q03468 1493 aa12.48□□□□□ -0.41
FREM1-201ENST00000380875 CSRNP3Q8WYN3 585 aa12.48□□□□□ -0.41
FREM1-201ENST00000380875 TULP1O00294 542 aaPredicted RBP12.47□□□□□ -0.41
FREM1-201ENST00000380875 TONSLQ96HA7 1378 aa12.46□□□□□ -0.41
FREM1-201ENST00000380875 WDR43Q15061 677 aaKnown RBP eCLIP12.44□□□□□ -0.42
FREM1-201ENST00000380875 TMC1Q8TDI8 760 aa12.41□□□□□ -0.42
FREM1-201ENST00000380875 MYH16Q9H6N6 1097 aa12.39□□□□□ -0.43
FREM1-201ENST00000380875 UPF2Q9HAU5 1272 aaKnown RBP12.39□□□□□ -0.43
FREM1-201ENST00000380875 ANP32BQ92688 251 aaKnown RBP12.39□□□□□ -0.43
FREM1-201ENST00000380875 FAM9BQ8IZU0 186 aa12.38□□□□□ -0.43
FREM1-201ENST00000380875 MLECQ14165 292 aa12.37□□□□□ -0.43
FREM1-201ENST00000380875 PPM1GO15355 546 aaPredicted RBP12.36□□□□□ -0.43
FREM1-201ENST00000380875 ANP32AP39687 249 aaKnown RBP12.36□□□□□ -0.43
FREM1-201ENST00000380875 MTUS2Q5JR59 1369 aa12.36□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms