Protein–RNA interactions for Protein: O60224

SSX4, Protein SSX4, humanhuman

Predictions only

Length 188 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSX4O60224 AVPR2-203ENST00000370049 1307 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
SSX4O60224 CYB561D2-205ENST00000425346 1319 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
SSX4O60224 CAPG-201ENST00000263867 1442 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
SSX4O60224 CDCP1-202ENST00000425231 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
SSX4O60224 NKIRAS2-204ENST00000393880 1644 ntAPPRIS P1 TSL 2 BASIC18.74■□□□□ 0.59
SSX4O60224 RHBDD2-201ENST00000006777 1802 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
SSX4O60224 P2RX4-202ENST00000337233 2032 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
SSX4O60224 RUVBL2-206ENST00000595090 2009 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
SSX4O60224 FAM83H-201ENST00000388913 5654 ntAPPRIS P1 TSL 5 BASIC18.74■□□□□ 0.59
SSX4O60224 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
SSX4O60224 CDKN2C-203ENST00000396148 2086 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
SSX4O60224 XBP1-201ENST00000216037 1850 ntAPPRIS P2 TSL 1 (best) BASIC18.74■□□□□ 0.59
SSX4O60224 FDXR-201ENST00000293195 1875 ntAPPRIS ALT1 TSL 1 (best) BASIC18.74■□□□□ 0.59
SSX4O60224 C1QL1-201ENST00000253407 1295 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
SSX4O60224 CRB3-202ENST00000356762 733 ntAPPRIS P4 TSL 1 (best) BASIC18.74■□□□□ 0.59
SSX4O60224 PRKCQ-AS1-204ENST00000455810 920 ntTSL 2 BASIC18.74■□□□□ 0.59
SSX4O60224 SUZ12P1-202ENST00000578070 929 ntTSL 5 BASIC18.74■□□□□ 0.59
SSX4O60224 UQCR11-202ENST00000589880 504 ntAPPRIS P1 TSL 3 BASIC18.74■□□□□ 0.59
SSX4O60224 ENTPD6-201ENST00000354989 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
SSX4O60224 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC18.74■□□□□ 0.59
SSX4O60224 CCDC151-201ENST00000356392 2107 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
SSX4O60224 ADAMTS2-202ENST00000274609 2044 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
SSX4O60224 TRPV3-209ENST00000576742 2766 ntAPPRIS P3 TSL 1 (best) BASIC18.74■□□□□ 0.59
SSX4O60224 AC144652.1-201ENST00000609974 1624 ntBASIC18.74■□□□□ 0.59
SSX4O60224 SLC35A2-210ENST00000616181 1614 ntTSL 2 BASIC18.74■□□□□ 0.59
SSX4O60224 ILDR2-207ENST00000529071 2566 ntAPPRIS ALT2 TSL 5 BASIC18.74■□□□□ 0.59
SSX4O60224 KLHL11-201ENST00000319121 2383 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
SSX4O60224 ZNF280B-203ENST00000626650 5721 ntAPPRIS P1 TSL 2 BASIC18.73■□□□□ 0.59
SSX4O60224 PTPA-223ENST00000452489 2526 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
SSX4O60224 SPHK1-202ENST00000392496 1779 ntAPPRIS P3 TSL 1 (best) BASIC18.73■□□□□ 0.59
SSX4O60224 TUB-203ENST00000534099 1759 ntTSL 2 BASIC18.73■□□□□ 0.59
SSX4O60224 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
SSX4O60224 SAMD8-202ENST00000372690 1654 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
SSX4O60224 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
SSX4O60224 SDC3-202ENST00000339394 1580 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
SSX4O60224 MESP2-201ENST00000341735 1552 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
SSX4O60224 MARK2-211ENST00000513765 2671 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
SSX4O60224 HOXB7-201ENST00000239165 1371 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
SSX4O60224 BCL2L12-201ENST00000246784 990 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
SSX4O60224 GP9-201ENST00000307395 889 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
SSX4O60224 AC093817.1-201ENST00000507296 812 ntTSL 3 BASIC18.73■□□□□ 0.59
SSX4O60224 RAB6A-204ENST00000536566 1267 ntTSL 5 BASIC18.73■□□□□ 0.59
SSX4O60224 MLF2-206ENST00000539187 1110 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
SSX4O60224 OTUB1-212ENST00000543988 1259 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
SSX4O60224 CCDC92B-201ENST00000575506 885 ntBASIC18.73■□□□□ 0.59
SSX4O60224 NEDD4L-225ENST00000589054 1033 ntTSL 3 BASIC18.73■□□□□ 0.59
SSX4O60224 ZNF513-202ENST00000407879 2077 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
SSX4O60224 ACOT2-201ENST00000238651 1774 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
SSX4O60224 MSLN-205ENST00000563941 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
SSX4O60224 AP1S1-201ENST00000337619 1306 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
SSX4O60224 JAGN1-201ENST00000307768 1693 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
SSX4O60224 AR-209ENST00000613054 3532 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
SSX4O60224 CNNM4-201ENST00000377075 4800 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
SSX4O60224 BRD9-202ENST00000467963 2156 ntAPPRIS P1 TSL 2 BASIC18.72■□□□□ 0.59
SSX4O60224 CECR2-202ENST00000342247 6178 ntAPPRIS ALT2 TSL 5 BASIC18.72■□□□□ 0.59
SSX4O60224 TOX2-201ENST00000341197 1880 ntAPPRIS P1 TSL 2 BASIC18.72■□□□□ 0.59
SSX4O60224 PYCARD-201ENST00000247470 990 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
SSX4O60224 LHPP-203ENST00000392757 840 ntTSL 3 BASIC18.72■□□□□ 0.59
SSX4O60224 ATP6V0E2-204ENST00000464662 513 ntAPPRIS P1 TSL 2 BASIC18.72■□□□□ 0.59
SSX4O60224 YJEFN3-203ENST00000514277 995 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
SSX4O60224 MRM1-203ENST00000612760 1284 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
SSX4O60224 H2AFB3-201ENST00000615853 591 ntAPPRIS P1 BASIC18.72■□□□□ 0.59
SSX4O60224 NUDT11-201ENST00000375992 2385 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
SSX4O60224 DCAF8-211ENST00000475733 1426 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
SSX4O60224 STK19-201ENST00000375331 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
SSX4O60224 SNUPN-205ENST00000564644 1931 ntAPPRIS P1 TSL 2 BASIC18.72■□□□□ 0.59
SSX4O60224 TMEM235-201ENST00000374946 2409 ntTSL 5 BASIC18.72■□□□□ 0.59
SSX4O60224 C2CD4B-201ENST00000380392 1579 ntAPPRIS P1 TSL 2 BASIC18.72■□□□□ 0.59
SSX4O60224 FAM102B-202ENST00000405454 1585 ntAPPRIS ALT2 TSL 5 BASIC18.72■□□□□ 0.59
SSX4O60224 YBX3-202ENST00000279550 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
SSX4O60224 DNAJB5-201ENST00000312316 2391 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
SSX4O60224 DMRT2-205ENST00000382255 2367 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
SSX4O60224 POMGNT2-202ENST00000441964 2531 ntAPPRIS P1 TSL 4 BASIC18.71■□□□□ 0.59
SSX4O60224 IL15RA-204ENST00000379977 1626 ntAPPRIS P3 TSL 1 (best) BASIC18.71■□□□□ 0.59
SSX4O60224 SLC25A5-AS1-202ENST00000445759 1616 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
SSX4O60224 SCN1B-206ENST00000638536 1600 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
SSX4O60224 FGFR2-204ENST00000356226 3547 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
SSX4O60224 PRICKLE3-206ENST00000599218 2062 ntAPPRIS P3 TSL 1 (best) BASIC18.71■□□□□ 0.59
SSX4O60224 GADD45G-202ENST00000375769 977 ntTSL 2 BASIC18.71■□□□□ 0.59
SSX4O60224 TNFRSF18-202ENST00000379265 705 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
SSX4O60224 INS-202ENST00000381330 597 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
SSX4O60224 ATE1-AS1-201ENST00000437593 951 ntTSL 2 BASIC18.71■□□□□ 0.59
SSX4O60224 POLR2E-214ENST00000619917 932 ntTSL 5 BASIC18.71■□□□□ 0.59
SSX4O60224 TMTC1-203ENST00000539277 2758 ntAPPRIS P2 TSL 1 (best) BASIC18.71■□□□□ 0.59
SSX4O60224 ARIH2OS-201ENST00000408959 1598 ntAPPRIS P1 BASIC18.71■□□□□ 0.59
SSX4O60224 AC110285.2-201ENST00000571724 1565 ntTSL 2 BASIC18.71■□□□□ 0.59
SSX4O60224 MGAT5B-209ENST00000569840 4492 ntAPPRIS ALT1 TSL 5 BASIC18.71■□□□□ 0.59
SSX4O60224 GATAD1-201ENST00000287957 3361 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
SSX4O60224 LRRC34-201ENST00000446859 1718 ntAPPRIS ALT2 TSL 2 BASIC18.71■□□□□ 0.59
SSX4O60224 FBXO31-207ENST00000618298 1871 ntTSL 5 BASIC18.71■□□□□ 0.59
SSX4O60224 WT1-AS-205ENST00000494911 1320 ntTSL 4 BASIC18.71■□□□□ 0.59
SSX4O60224 MRPL37-202ENST00000360840 1483 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
SSX4O60224 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.58
SSX4O60224 FAM167A-204ENST00000528897 1620 ntAPPRIS P1 TSL 2 BASIC18.71■□□□□ 0.58
SSX4O60224 PRDM1-202ENST00000369091 2612 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
SSX4O60224 RITA1-201ENST00000548278 2053 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
SSX4O60224 TNFAIP2-209ENST00000560869 4683 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
SSX4O60224 LINC02228-203ENST00000641970 1355 ntBASIC18.7■□□□□ 0.58
SSX4O60224 A1BG-201ENST00000263100 1722 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
SSX4O60224 SNX7-201ENST00000306121 1734 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 41.5 ms