Protein–RNA interactions for Protein: O15379

HDAC3, Histone deacetylase 3, humanhuman

Predictions only

Length 428 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3O15379 TPST2-202ENST00000398110 1968 ntAPPRIS P1 TSL 2 BASIC20.23■□□□□ 0.83
HDAC3O15379 ACBD4-201ENST00000321854 1806 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
HDAC3O15379 NUP160-203ENST00000526870 1537 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
HDAC3O15379 AC090360.1-201ENST00000569722 2218 ntAPPRIS ALT2 TSL 2 BASIC20.22■□□□□ 0.83
HDAC3O15379 AC009237.3-201ENST00000393279 1427 ntBASIC20.22■□□□□ 0.83
HDAC3O15379 LINC02136-201ENST00000567469 530 ntTSL 4 BASIC20.22■□□□□ 0.83
HDAC3O15379 MAP7D2-203ENST00000443379 2476 ntAPPRIS ALT2 TSL 2 BASIC20.22■□□□□ 0.83
HDAC3O15379 CELF2-211ENST00000632065 1952 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
HDAC3O15379 PQLC2-201ENST00000375153 2153 ntAPPRIS P1 TSL 2 BASIC20.22■□□□□ 0.83
HDAC3O15379 TNIP2-203ENST00000503235 1653 ntTSL 3 BASIC20.22■□□□□ 0.83
HDAC3O15379 CYB5R2-212ENST00000533558 1658 ntAPPRIS P1 TSL 2 BASIC20.22■□□□□ 0.83
HDAC3O15379 CCDC166-201ENST00000542437 1320 ntAPPRIS P1 TSL 2 BASIC20.22■□□□□ 0.83
HDAC3O15379 SPON2-201ENST00000290902 1869 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
HDAC3O15379 CAPN12-201ENST00000328867 2762 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
HDAC3O15379 TANGO2-217ENST00000456048 2439 ntTSL 2 BASIC20.22■□□□□ 0.83
HDAC3O15379 PCSK6-214ENST00000611716 4409 ntAPPRIS P4 TSL 1 (best) BASIC20.22■□□□□ 0.83
HDAC3O15379 AC055733.4-201ENST00000638462 1354 ntBASIC20.21■□□□□ 0.83
HDAC3O15379 TSPAN17-202ENST00000310032 2550 ntTSL 5 BASIC20.21■□□□□ 0.83
HDAC3O15379 RNH1-222ENST00000533410 1829 ntAPPRIS P1 TSL 5 BASIC20.21■□□□□ 0.83
HDAC3O15379 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
HDAC3O15379 C4orf36-201ENST00000295898 881 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
HDAC3O15379 IGHV3-20-201ENST00000390606 415 ntAPPRIS P1 BASIC20.21■□□□□ 0.83
HDAC3O15379 HDHD5-203ENST00000399852 1118 ntTSL 3 BASIC20.21■□□□□ 0.83
HDAC3O15379 AL390816.2-201ENST00000554252 737 ntTSL 3 BASIC20.21■□□□□ 0.83
HDAC3O15379 LINC01881-206ENST00000614114 957 ntTSL 2 BASIC20.21■□□□□ 0.83
HDAC3O15379 NSUN5-204ENST00000438747 1663 ntAPPRIS P4 TSL 1 (best) BASIC20.21■□□□□ 0.83
HDAC3O15379 SCUBE1-201ENST00000290460 2258 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
HDAC3O15379 CDCA4-201ENST00000336219 2513 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
HDAC3O15379 TSNAXIP1-202ENST00000415766 2338 ntAPPRIS ALT2 TSL 2 BASIC20.21■□□□□ 0.83
HDAC3O15379 AL161756.1-202ENST00000359491 1717 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
HDAC3O15379 AC007249.2-201ENST00000553181 1737 ntTSL 5 BASIC20.21■□□□□ 0.83
HDAC3O15379 FAM189B-201ENST00000350210 2379 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
HDAC3O15379 ULK2-202ENST00000395544 6010 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
HDAC3O15379 SSH3-202ENST00000308298 2046 ntTSL 2 BASIC20.2■□□□□ 0.83
HDAC3O15379 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC20.2■□□□□ 0.82
HDAC3O15379 ZMAT3-203ENST00000432729 2944 ntAPPRIS ALT1 TSL 2 BASIC20.2■□□□□ 0.82
HDAC3O15379 NEURL4-203ENST00000570460 4890 ntAPPRIS ALT2 TSL 5 BASIC20.2■□□□□ 0.82
HDAC3O15379 FP700111.2-201ENST00000619190 1892 ntBASIC20.2■□□□□ 0.82
HDAC3O15379 AGAP3-202ENST00000397238 3225 ntAPPRIS P2 TSL 1 (best) BASIC20.2■□□□□ 0.82
HDAC3O15379 GRB14-201ENST00000263915 2382 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
HDAC3O15379 HSD3B7-202ENST00000297679 2172 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
HDAC3O15379 CCDC115-202ENST00000409127 1247 ntTSL 2 BASIC20.2■□□□□ 0.82
HDAC3O15379 TRAPPC5-202ENST00000426877 765 ntAPPRIS P1 TSL 2 BASIC20.2■□□□□ 0.82
HDAC3O15379 HAUS7-211ENST00000626181 414 ntAPPRIS ALT2 TSL 5 BASIC20.2■□□□□ 0.82
HDAC3O15379 TNKS2-201ENST00000371627 6157 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
HDAC3O15379 BBC3-202ENST00000341983 1538 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
HDAC3O15379 CHD1L-201ENST00000361293 2484 ntTSL 2 BASIC20.2■□□□□ 0.82
HDAC3O15379 NAA10-208ENST00000464845 1772 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
HDAC3O15379 RARG-204ENST00000543726 1779 ntTSL 2 BASIC20.2■□□□□ 0.82
HDAC3O15379 DISC1-215ENST00000602281 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
HDAC3O15379 BCAT2-207ENST00000597011 1579 ntTSL 5 BASIC20.2■□□□□ 0.82
HDAC3O15379 TMEM11-201ENST00000317635 2095 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
HDAC3O15379 PGAM5-203ENST00000498926 2834 ntAPPRIS P1 TSL 2 BASIC20.2■□□□□ 0.82
HDAC3O15379 NRXN1-202ENST00000342183 3315 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
HDAC3O15379 DBNL-220ENST00000494774 2117 ntAPPRIS P4 TSL 1 (best) BASIC20.2■□□□□ 0.82
HDAC3O15379 HMOX2-218ENST00000619913 1908 ntAPPRIS P1 TSL 5 BASIC20.19■□□□□ 0.82
HDAC3O15379 SLC39A5-209ENST00000454355 1968 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
HDAC3O15379 HDHD5-201ENST00000155674 1735 ntAPPRIS P3 TSL 1 (best) BASIC20.19■□□□□ 0.82
HDAC3O15379 SYTL1-211ENST00000618673 1712 ntTSL 5 BASIC20.19■□□□□ 0.82
HDAC3O15379 CALY-201ENST00000252939 2271 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
HDAC3O15379 USP39-204ENST00000409766 2033 ntTSL 2 BASIC20.19■□□□□ 0.82
HDAC3O15379 AL512408.1-201ENST00000569378 2000 ntBASIC20.19■□□□□ 0.82
HDAC3O15379 PACRGL-227ENST00000513459 1773 ntTSL 5 BASIC20.19■□□□□ 0.82
HDAC3O15379 C9orf47-202ENST00000375850 859 ntAPPRIS ALT2 TSL 3 BASIC20.19■□□□□ 0.82
HDAC3O15379 TMC6-218ENST00000591436 1155 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
HDAC3O15379 ANKRD11-217ENST00000613312 1584 ntAPPRIS ALT2 TSL 5 BASIC20.19■□□□□ 0.82
HDAC3O15379 ASCL2-201ENST00000331289 1852 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
HDAC3O15379 SETD9-211ENST00000628593 1306 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
HDAC3O15379 CACNB2-203ENST00000352115 1911 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
HDAC3O15379 SDHA-220ENST00000617470 1952 ntTSL 5 BASIC20.19■□□□□ 0.82
HDAC3O15379 CENPH-201ENST00000283006 1389 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
HDAC3O15379 P4HB-201ENST00000331483 2603 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
HDAC3O15379 PPCS-203ENST00000372561 1431 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
HDAC3O15379 MZF1-203ENST00000594234 2385 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
HDAC3O15379 IGFBP3-210ENST00000613132 2412 ntTSL 5 BASIC20.18■□□□□ 0.82
HDAC3O15379 GFRA3-202ENST00000378362 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
HDAC3O15379 FBXL22-201ENST00000360587 1526 ntAPPRIS P2 TSL 1 (best) BASIC20.18■□□□□ 0.82
HDAC3O15379 ADRM1-204ENST00000491935 1530 ntAPPRIS P1 TSL 5 BASIC20.18■□□□□ 0.82
HDAC3O15379 HPS6-201ENST00000299238 2649 ntAPPRIS P1 BASIC20.18■□□□□ 0.82
HDAC3O15379 NGEF-202ENST00000373552 2286 ntAPPRIS P1 TSL 2 BASIC20.18■□□□□ 0.82
HDAC3O15379 INS-202ENST00000381330 597 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
HDAC3O15379 KRTAP5-4-201ENST00000399682 1181 ntAPPRIS P5 BASIC20.18■□□□□ 0.82
HDAC3O15379 AL161908.1-203ENST00000425370 506 ntTSL 2 BASIC20.18■□□□□ 0.82
HDAC3O15379 SUMF1-205ENST00000458465 1102 ntTSL 2 BASIC20.18■□□□□ 0.82
HDAC3O15379 ERGIC1-206ENST00000519860 1000 ntTSL 3 BASIC20.18■□□□□ 0.82
HDAC3O15379 PPP1R14A-204ENST00000591291 433 ntTSL 5 BASIC20.18■□□□□ 0.82
HDAC3O15379 RELL2-205ENST00000518856 1419 ntTSL 5 BASIC20.18■□□□□ 0.82
HDAC3O15379 PARP2-202ENST00000429687 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
HDAC3O15379 PRMT2-210ENST00000458387 1874 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
HDAC3O15379 EEF1D-201ENST00000317198 1458 ntAPPRIS ALT2 TSL 5 BASIC20.18■□□□□ 0.82
HDAC3O15379 PYCR3-207ENST00000495276 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
HDAC3O15379 CYP21A2-222ENST00000435122 1914 ntTSL 2 BASIC20.17■□□□□ 0.82
HDAC3O15379 NRP2-206ENST00000417189 2386 ntTSL 2 BASIC20.17■□□□□ 0.82
HDAC3O15379 ZNF511-202ENST00000361518 1520 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
HDAC3O15379 BX005040.4-201ENST00000637145 1518 ntBASIC20.17■□□□□ 0.82
HDAC3O15379 CRLF3-201ENST00000324238 2957 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
HDAC3O15379 FAM213A-202ENST00000372185 1723 ntTSL 2 BASIC20.17■□□□□ 0.82
HDAC3O15379 SLC25A22-216ENST00000531214 1790 ntAPPRIS P1 TSL 2 BASIC20.17■□□□□ 0.82
HDAC3O15379 PRICKLE4-201ENST00000394259 939 ntAPPRIS ALT2 TSL 5 BASIC20.17■□□□□ 0.82
HDAC3O15379 BX842568.3-201ENST00000418104 571 ntBASIC20.17■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 15.6 ms