Protein–RNA interactions for Protein: O00257

CBX4, E3 SUMO-protein ligase CBX4, humanhuman

Predictions only

Length 560 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4O00257 ELAC1-204ENST00000591429 975 ntTSL 1 (best) BASIC21.29■■□□□ 1
CBX4O00257 PARD6A-203ENST00000602551 1171 ntTSL 5 BASIC21.29■■□□□ 1
CBX4O00257 AC005181.1-201ENST00000604782 1256 ntBASIC21.29■■□□□ 1
CBX4O00257 PARP1-210ENST00000629232 477 ntTSL 5 BASIC21.29■■□□□ 1
CBX4O00257 DOK3-202ENST00000357198 1729 ntTSL 2 BASIC21.29■■□□□ 1
CBX4O00257 OTUB1-211ENST00000543004 1647 ntTSL 5 BASIC21.29■■□□□ 1
CBX4O00257 VKORC1L1-202ENST00000434382 1541 ntTSL 2 BASIC21.29■■□□□ 1
CBX4O00257 CEBPE-201ENST00000206513 1554 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
CBX4O00257 NISCH-201ENST00000345716 5238 ntAPPRIS P3 TSL 1 (best) BASIC21.28■■□□□ 1
CBX4O00257 HRASLS-201ENST00000264735 1066 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
CBX4O00257 AC243732.1-201ENST00000612648 864 ntBASIC21.28■■□□□ 1
CBX4O00257 TERF2-201ENST00000254942 2983 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
CBX4O00257 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
CBX4O00257 BST1-202ENST00000382346 1993 ntAPPRIS ALT2 TSL 5 BASIC21.28■■□□□ 1
CBX4O00257 HOXC9-203ENST00000508190 1505 ntAPPRIS P1 TSL 3 BASIC21.28■■□□□ 1
CBX4O00257 PALM-207ENST00000590161 2137 ntTSL 4 BASIC21.28■■□□□ 1
CBX4O00257 ZNF622-201ENST00000308683 1699 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
CBX4O00257 WRNIP1-203ENST00000380771 2595 ntTSL 1 (best) BASIC21.27■■□□□ 1
CBX4O00257 CDK18-203ENST00000429964 1648 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
CBX4O00257 TRNT1-207ENST00000420393 854 ntTSL 3 BASIC21.27■■□□□ 1
CBX4O00257 AP2S1-207ENST00000599990 829 ntAPPRIS ALT1 TSL 2 BASIC21.27■■□□□ 1
CBX4O00257 SH2B1-204ENST00000395532 2529 ntAPPRIS P1 TSL 2 BASIC21.27■■□□□ 1
CBX4O00257 SLC18A3-201ENST00000374115 2420 ntAPPRIS P1 BASIC21.27■■□□□ 1
CBX4O00257 HRK-201ENST00000257572 5789 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
CBX4O00257 C19orf12-201ENST00000323670 2464 ntAPPRIS P1 TSL 2 BASIC21.27■□□□□ 0.99
CBX4O00257 DLK2-201ENST00000357338 2038 ntAPPRIS P3 TSL 2 BASIC21.26■□□□□ 0.99
CBX4O00257 CLDN23-201ENST00000519106 2169 ntAPPRIS P1 BASIC21.26■□□□□ 0.99
CBX4O00257 NDUFV2-AS1-201ENST00000582375 770 ntTSL 2 BASIC21.26■□□□□ 0.99
CBX4O00257 GGTLC3-201ENST00000619998 968 ntAPPRIS P1 TSL 5 BASIC21.26■□□□□ 0.99
CBX4O00257 FBXO25-202ENST00000350302 2229 ntAPPRIS ALT1 TSL 1 (best) BASIC21.26■□□□□ 0.99
CBX4O00257 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
CBX4O00257 HUNK-201ENST00000270112 7385 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
CBX4O00257 AC007128.1-201ENST00000424460 1853 ntTSL 5 BASIC21.26■□□□□ 0.99
CBX4O00257 TMEM200B-201ENST00000420504 2553 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
CBX4O00257 DOCK5-208ENST00000481100 2166 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
CBX4O00257 ABHD12B-202ENST00000353130 1477 ntAPPRIS P3 TSL 1 (best) BASIC21.26■□□□□ 0.99
CBX4O00257 BIN1-207ENST00000357970 2497 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
CBX4O00257 RELL2-207ENST00000521367 1780 ntTSL 5 BASIC21.25■□□□□ 0.99
CBX4O00257 PABPC1L2A-201ENST00000373519 2237 ntAPPRIS P1 BASIC21.25■□□□□ 0.99
CBX4O00257 MYO1C-203ENST00000438665 4898 ntAPPRIS ALT1 TSL 5 BASIC21.25■□□□□ 0.99
CBX4O00257 TCF3-203ENST00000395423 2779 ntTSL 5 BASIC21.25■□□□□ 0.99
CBX4O00257 AC007322.4-201ENST00000509611 723 ntBASIC21.25■□□□□ 0.99
CBX4O00257 ARL6IP4-220ENST00000543566 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
CBX4O00257 DHRS4-207ENST00000559632 1003 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
CBX4O00257 AC068338.2-201ENST00000563278 1430 ntBASIC21.25■□□□□ 0.99
CBX4O00257 MFSD14C-203ENST00000602917 786 ntAPPRIS P5 TSL 1 (best) BASIC21.25■□□□□ 0.99
CBX4O00257 AL161421.1-201ENST00000619666 1101 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
CBX4O00257 TRIM28-201ENST00000253024 2960 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
CBX4O00257 ERLEC1-203ENST00000405123 1756 ntTSL 5 BASIC21.25■□□□□ 0.99
CBX4O00257 SLC35F5-203ENST00000409342 2284 ntTSL 2 BASIC21.25■□□□□ 0.99
CBX4O00257 SIRT3-202ENST00000524564 1395 ntTSL 2 BASIC21.24■□□□□ 0.99
CBX4O00257 TMEM125-201ENST00000432792 1850 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
CBX4O00257 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC21.24■□□□□ 0.99
CBX4O00257 ELL3-201ENST00000319359 2352 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
CBX4O00257 FAM3A-202ENST00000359889 1712 ntAPPRIS P1 TSL 2 BASIC21.24■□□□□ 0.99
CBX4O00257 ALG1-202ENST00000544428 1419 ntTSL 2 BASIC21.24■□□□□ 0.99
CBX4O00257 PAXIP1-AS1-201ENST00000608317 2256 ntBASIC21.24■□□□□ 0.99
CBX4O00257 PARD3-208ENST00000374789 6005 ntAPPRIS P3 TSL 1 (best) BASIC21.24■□□□□ 0.99
CBX4O00257 TM4SF5-201ENST00000270560 708 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
CBX4O00257 EIF5A-205ENST00000419711 1271 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
CBX4O00257 NCF1B-203ENST00000435988 1254 ntBASIC21.24■□□□□ 0.99
CBX4O00257 NAT16-202ENST00000443096 1286 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
CBX4O00257 LINC01117-201ENST00000443670 699 ntTSL 5 BASIC21.24■□□□□ 0.99
CBX4O00257 MAGI2-AS3-209ENST00000448195 774 ntTSL 3 BASIC21.24■□□□□ 0.99
CBX4O00257 ATP9A-202ENST00000338821 8106 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
CBX4O00257 RBPJL-202ENST00000372741 1636 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
CBX4O00257 CCDC189-206ENST00000543610 1967 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
CBX4O00257 INPPL1-201ENST00000298229 4733 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
CBX4O00257 WRNIP1-204ENST00000380773 2670 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
CBX4O00257 SAP30L-201ENST00000297109 6226 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
CBX4O00257 C10orf55-202ENST00000412307 2360 ntAPPRIS P1 TSL 5 BASIC21.24■□□□□ 0.99
CBX4O00257 PDXDC1-205ENST00000535621 2048 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
CBX4O00257 UNC119-201ENST00000301032 1653 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
CBX4O00257 STEAP1-201ENST00000297205 1313 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
CBX4O00257 CDCA4-202ENST00000392590 1536 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
CBX4O00257 IRAK3-203ENST00000545837 1579 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
CBX4O00257 CERS4-209ENST00000559450 1637 ntAPPRIS P1 TSL 5 BASIC21.23■□□□□ 0.99
CBX4O00257 ILDR2-206ENST00000528703 2446 ntAPPRIS ALT2 TSL 5 BASIC21.23■□□□□ 0.99
CBX4O00257 MGST3-205ENST00000367889 1015 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
CBX4O00257 PLLP-204ENST00000569059 665 ntTSL 3 BASIC21.23■□□□□ 0.99
CBX4O00257 CD24-202ENST00000610952 802 ntAPPRIS P3 TSL 2 BASIC21.23■□□□□ 0.99
CBX4O00257 AL050303.2-201ENST00000619798 666 ntBASIC21.23■□□□□ 0.99
CBX4O00257 TCP11-203ENST00000373974 1689 ntAPPRIS ALT2 TSL 2 BASIC21.23■□□□□ 0.99
CBX4O00257 HENMT1-203ENST00000402983 1696 ntAPPRIS P2 TSL 1 (best) BASIC21.23■□□□□ 0.99
CBX4O00257 PTPN18-202ENST00000347849 2472 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
CBX4O00257 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC21.23■□□□□ 0.99
CBX4O00257 DTWD2-203ENST00000510708 2307 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
CBX4O00257 SLC25A22-216ENST00000531214 1790 ntAPPRIS P1 TSL 2 BASIC21.23■□□□□ 0.99
CBX4O00257 C10orf91-202ENST00000392630 1846 ntTSL 2 BASIC21.22■□□□□ 0.99
CBX4O00257 GPC1-202ENST00000420138 1835 ntTSL 5 BASIC21.22■□□□□ 0.99
CBX4O00257 S1PR5-204ENST00000617721 1698 ntTSL 5 BASIC21.22■□□□□ 0.99
CBX4O00257 TPD52L1-201ENST00000304877 1468 ntAPPRIS ALT2 TSL 2 BASIC21.22■□□□□ 0.99
CBX4O00257 VIL1-204ENST00000440053 1454 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
CBX4O00257 PNLIPRP2-204ENST00000591655 1456 ntAPPRIS ALT1 TSL 5 BASIC21.22■□□□□ 0.99
CBX4O00257 MDK-204ENST00000395569 686 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
CBX4O00257 C4orf48-201ENST00000409248 433 ntAPPRIS ALT2 TSL 1 (best) BASIC21.22■□□□□ 0.99
CBX4O00257 LY6E-202ENST00000429120 1173 ntAPPRIS P2 TSL 1 (best) BASIC21.22■□□□□ 0.99
CBX4O00257 APTR-203ENST00000430801 583 ntTSL 5 BASIC21.22■□□□□ 0.99
CBX4O00257 CDKN2A-205ENST00000479692 544 ntTSL 5 BASIC21.22■□□□□ 0.99
CBX4O00257 AL591742.1-201ENST00000604433 565 ntBASIC21.22■□□□□ 0.99
Retrieved 100 of 98,524 protein–RNA pairs in 26.7 ms