Protein–RNA interactions for Protein: A0A0B4J244

TRAV3, T-cell receptor alpha variable 3 (gene/pseudogene) (Fragment), humanhuman

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV3A0A0B4J244 CELF2-211ENST00000632065 1952 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
TRAV3A0A0B4J244 EFHD2-201ENST00000375980 2419 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
TRAV3A0A0B4J244 RORB-AS1-201ENST00000417576 1178 ntTSL 5 BASIC16.73■□□□□ 0.27
TRAV3A0A0B4J244 PLPP5-201ENST00000419686 794 ntTSL 2 BASIC16.73■□□□□ 0.27
TRAV3A0A0B4J244 NALT1-201ENST00000429224 738 ntTSL 5 BASIC16.73■□□□□ 0.27
TRAV3A0A0B4J244 PRMT1-221ENST00000610806 1192 ntTSL 3 BASIC16.73■□□□□ 0.27
TRAV3A0A0B4J244 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC16.73■□□□□ 0.27
TRAV3A0A0B4J244 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
TRAV3A0A0B4J244 RHNO1-204ENST00000489288 1870 ntAPPRIS P3 TSL 1 (best) BASIC16.73■□□□□ 0.27
TRAV3A0A0B4J244 LINC00682-201ENST00000498940 1625 ntTSL 3 BASIC16.73■□□□□ 0.27
TRAV3A0A0B4J244 PCMT1-205ENST00000464889 1984 ntAPPRIS P3 TSL 1 (best) BASIC16.73■□□□□ 0.27
TRAV3A0A0B4J244 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC16.73■□□□□ 0.27
TRAV3A0A0B4J244 PPP1R3F-201ENST00000055335 3421 ntAPPRIS P1 TSL 2 BASIC16.73■□□□□ 0.27
TRAV3A0A0B4J244 PELI3-202ENST00000349459 2783 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
TRAV3A0A0B4J244 MYO1D-213ENST00000583621 1916 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
TRAV3A0A0B4J244 SLC25A22-216ENST00000531214 1790 ntAPPRIS P1 TSL 2 BASIC16.72■□□□□ 0.27
TRAV3A0A0B4J244 GABARAPL3-202ENST00000624044 1851 ntBASIC16.72■□□□□ 0.27
TRAV3A0A0B4J244 DNAAF3-207ENST00000527223 2228 ntAPPRIS ALT2 TSL 2 BASIC16.72■□□□□ 0.27
TRAV3A0A0B4J244 TDRD10-202ENST00000368482 2331 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
TRAV3A0A0B4J244 EIF4EBP1-201ENST00000338825 1020 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
TRAV3A0A0B4J244 EBPL-204ENST00000378272 766 ntTSL 3 BASIC16.72■□□□□ 0.27
TRAV3A0A0B4J244 AC091305.1-201ENST00000479476 895 ntBASIC16.72■□□□□ 0.27
TRAV3A0A0B4J244 AL391422.3-201ENST00000603791 2761 ntBASIC16.72■□□□□ 0.27
TRAV3A0A0B4J244 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC16.72■□□□□ 0.27
TRAV3A0A0B4J244 WNT10A-201ENST00000258411 2547 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
TRAV3A0A0B4J244 SDSL-201ENST00000345635 1397 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
TRAV3A0A0B4J244 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
TRAV3A0A0B4J244 PKIB-206ENST00000392490 1811 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
TRAV3A0A0B4J244 CALY-201ENST00000252939 2271 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
TRAV3A0A0B4J244 BRSK2-201ENST00000308219 4089 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
TRAV3A0A0B4J244 CDC42BPB-201ENST00000361246 6758 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
TRAV3A0A0B4J244 DUSP28-201ENST00000343217 1555 ntAPPRIS P1 TSL 2 BASIC16.72■□□□□ 0.27
TRAV3A0A0B4J244 BCAT2-207ENST00000597011 1579 ntTSL 5 BASIC16.72■□□□□ 0.27
TRAV3A0A0B4J244 CACNA1B-201ENST00000277549 7158 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
TRAV3A0A0B4J244 CACNA1B-202ENST00000277551 7158 ntAPPRIS ALT2 TSL 5 BASIC16.72■□□□□ 0.27
TRAV3A0A0B4J244 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
TRAV3A0A0B4J244 MAG-203ENST00000537831 2341 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
TRAV3A0A0B4J244 LINC00969-219ENST00000453324 1439 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
TRAV3A0A0B4J244 RASL12-202ENST00000421977 1523 ntTSL 2 BASIC16.71■□□□□ 0.27
TRAV3A0A0B4J244 SH3GL1-206ENST00000598564 2194 ntTSL 2 BASIC16.71■□□□□ 0.27
TRAV3A0A0B4J244 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.27
TRAV3A0A0B4J244 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
TRAV3A0A0B4J244 DUSP15-201ENST00000278979 1732 ntTSL 2 BASIC16.71■□□□□ 0.27
TRAV3A0A0B4J244 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
TRAV3A0A0B4J244 TAF6L-201ENST00000294168 2116 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
TRAV3A0A0B4J244 GLTPD2-201ENST00000331264 1023 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
TRAV3A0A0B4J244 PRDX4-202ENST00000379341 1005 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
TRAV3A0A0B4J244 VGLL4-208ENST00000424529 1025 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
TRAV3A0A0B4J244 FAM66D-201ENST00000434078 918 ntTSL 5 BASIC16.71■□□□□ 0.27
TRAV3A0A0B4J244 POLR2H-204ENST00000438240 994 ntTSL 3 BASIC16.71■□□□□ 0.27
TRAV3A0A0B4J244 TPT1-AS1-211ENST00000520622 604 ntTSL 4 BASIC16.71■□□□□ 0.27
TRAV3A0A0B4J244 AC012414.1-201ENST00000556676 535 ntBASIC16.71■□□□□ 0.27
TRAV3A0A0B4J244 HLA-G-204ENST00000376828 1490 ntAPPRIS ALT2 BASIC16.71■□□□□ 0.27
TRAV3A0A0B4J244 AC061975.6-201ENST00000579045 1553 ntBASIC16.71■□□□□ 0.27
TRAV3A0A0B4J244 LYSMD2-201ENST00000267838 1759 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
TRAV3A0A0B4J244 AC027702.1-201ENST00000563810 1770 ntBASIC16.71■□□□□ 0.27
TRAV3A0A0B4J244 FDXR-201ENST00000293195 1875 ntAPPRIS ALT1 TSL 1 (best) BASIC16.71■□□□□ 0.27
TRAV3A0A0B4J244 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.27
TRAV3A0A0B4J244 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.27
TRAV3A0A0B4J244 MPST-204ENST00000404393 1329 ntTSL 5 BASIC16.7■□□□□ 0.26
TRAV3A0A0B4J244 CCDC107-205ENST00000421582 1324 ntAPPRIS ALT2 TSL 2 BASIC16.7■□□□□ 0.26
TRAV3A0A0B4J244 LINC00454-202ENST00000430978 1327 ntTSL 5 BASIC16.7■□□□□ 0.26
TRAV3A0A0B4J244 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
TRAV3A0A0B4J244 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
TRAV3A0A0B4J244 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
TRAV3A0A0B4J244 AGAP4-207ENST00000616763 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
TRAV3A0A0B4J244 CYP27A1-201ENST00000258415 2286 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
TRAV3A0A0B4J244 GPR108-201ENST00000264080 2057 ntAPPRIS P2 TSL 1 (best) BASIC16.7■□□□□ 0.26
TRAV3A0A0B4J244 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
TRAV3A0A0B4J244 NAA10-208ENST00000464845 1772 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
TRAV3A0A0B4J244 KCNMB4-201ENST00000258111 4731 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
TRAV3A0A0B4J244 CA7-201ENST00000338437 1555 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
TRAV3A0A0B4J244 C1QL1-201ENST00000253407 1295 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
TRAV3A0A0B4J244 MED14OS-201ENST00000456333 900 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
TRAV3A0A0B4J244 TMEM179B-205ENST00000533861 797 ntTSL 5 BASIC16.7■□□□□ 0.26
TRAV3A0A0B4J244 EEF1DP3-203ENST00000566025 782 ntBASIC16.7■□□□□ 0.26
TRAV3A0A0B4J244 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
TRAV3A0A0B4J244 AC007225.1-201ENST00000566331 1836 ntBASIC16.7■□□□□ 0.26
TRAV3A0A0B4J244 SENP5-204ENST00000445299 2491 ntTSL 2 BASIC16.7■□□□□ 0.26
TRAV3A0A0B4J244 CAV2-201ENST00000222693 3301 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
TRAV3A0A0B4J244 PCDHAC2-203ENST00000615316 3011 ntBASIC16.7■□□□□ 0.26
TRAV3A0A0B4J244 TMEM11-201ENST00000317635 2095 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
TRAV3A0A0B4J244 SDHAF3-202ENST00000432641 2060 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
TRAV3A0A0B4J244 NCKAP1-201ENST00000360982 4989 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
TRAV3A0A0B4J244 TTYH1-202ENST00000376530 1885 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
TRAV3A0A0B4J244 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
TRAV3A0A0B4J244 ZFP69B-202ENST00000411995 2109 ntAPPRIS P1 TSL 5 BASIC16.69■□□□□ 0.26
TRAV3A0A0B4J244 UBC-201ENST00000339647 2688 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
TRAV3A0A0B4J244 AL158151.1-201ENST00000372490 2047 ntTSL 2 BASIC16.69■□□□□ 0.26
TRAV3A0A0B4J244 PPP1CC-201ENST00000335007 2559 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
TRAV3A0A0B4J244 CATSPER2-201ENST00000321596 1820 ntAPPRIS P3 TSL 5 BASIC16.69■□□□□ 0.26
TRAV3A0A0B4J244 PGAM5-203ENST00000498926 2834 ntAPPRIS P1 TSL 2 BASIC16.69■□□□□ 0.26
TRAV3A0A0B4J244 SUDS3P1-201ENST00000505831 966 ntBASIC16.69■□□□□ 0.26
TRAV3A0A0B4J244 SIRT3-215ENST00000532956 1235 ntTSL 2 BASIC16.69■□□□□ 0.26
TRAV3A0A0B4J244 CALM1-203ENST00000544280 1064 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
TRAV3A0A0B4J244 RAB5A-201ENST00000273047 2536 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
TRAV3A0A0B4J244 RARA-201ENST00000254066 2414 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
TRAV3A0A0B4J244 GRINA-201ENST00000313269 1968 ntAPPRIS P1 TSL 5 BASIC16.69■□□□□ 0.26
TRAV3A0A0B4J244 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC16.69■□□□□ 0.26
TRAV3A0A0B4J244 ZNF316-201ENST00000382252 5392 ntAPPRIS P1 TSL 5 BASIC16.69■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 21.3 ms