Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 IL15RA-209ENST00000397255 759 ntAPPRIS ALT2 TSL 5 BASIC17.85■□□□□ 0.45
CHMP1AQ9HD42 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
CHMP1AQ9HD42 DYM-203ENST00000442713 2147 ntTSL 2 BASIC17.85■□□□□ 0.45
CHMP1AQ9HD42 AL356441.2-201ENST00000443009 864 ntBASIC17.85■□□□□ 0.45
CHMP1AQ9HD42 SSR2-210ENST00000480567 895 ntAPPRIS P1 TSL 2 BASIC17.85■□□□□ 0.45
CHMP1AQ9HD42 SPOP-206ENST00000504102 1865 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
CHMP1AQ9HD42 AP002893.1-201ENST00000528885 684 ntTSL 2 BASIC17.85■□□□□ 0.45
CHMP1AQ9HD42 IL15RA-216ENST00000530685 660 ntTSL 5 BASIC17.85■□□□□ 0.45
CHMP1AQ9HD42 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC17.85■□□□□ 0.45
CHMP1AQ9HD42 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC17.85■□□□□ 0.45
CHMP1AQ9HD42 SNCB-206ENST00000614675 1407 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
CHMP1AQ9HD42 PAQR6-215ENST00000623241 1961 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
CHMP1AQ9HD42 WT1-210ENST00000639563 1494 ntAPPRIS ALT2 TSL 1 (best) BASIC17.85■□□□□ 0.45
CHMP1AQ9HD42 CDK13-207ENST00000613626 3099 ntTSL 5 BASIC17.85■□□□□ 0.45
CHMP1AQ9HD42 FAM3C-201ENST00000359943 2508 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
CHMP1AQ9HD42 HFE2-202ENST00000357836 2123 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
CHMP1AQ9HD42 ARID1B-203ENST00000350026 7962 ntAPPRIS P3 TSL 1 (best) BASIC17.84■□□□□ 0.45
CHMP1AQ9HD42 BASP1-203ENST00000616743 1711 ntAPPRIS P1 TSL 3 BASIC17.84■□□□□ 0.45
CHMP1AQ9HD42 KBTBD11-201ENST00000320248 6710 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
CHMP1AQ9HD42 AGAP3-202ENST00000397238 3225 ntAPPRIS P2 TSL 1 (best) BASIC17.84■□□□□ 0.45
CHMP1AQ9HD42 HMBS-201ENST00000278715 1501 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
CHMP1AQ9HD42 ARHGAP35-201ENST00000404338 8889 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
CHMP1AQ9HD42 ADGRA3-204ENST00000502482 2870 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
CHMP1AQ9HD42 ANKRD40-201ENST00000285243 4184 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
CHMP1AQ9HD42 E4F1-201ENST00000301727 2573 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
CHMP1AQ9HD42 SURF2-201ENST00000371964 842 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
CHMP1AQ9HD42 HYI-204ENST00000372432 1066 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
CHMP1AQ9HD42 U2AF1-202ENST00000380276 940 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
CHMP1AQ9HD42 TRAPPC5-202ENST00000426877 765 ntAPPRIS P1 TSL 2 BASIC17.84■□□□□ 0.45
CHMP1AQ9HD42 ERGIC1-206ENST00000519860 1000 ntTSL 3 BASIC17.84■□□□□ 0.45
CHMP1AQ9HD42 TMC6-218ENST00000591436 1155 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
CHMP1AQ9HD42 SHISA9-205ENST00000639941 1135 ntAPPRIS ALT2 TSL 5 BASIC17.84■□□□□ 0.45
CHMP1AQ9HD42 CHST8-202ENST00000434302 2225 ntAPPRIS P1 TSL 2 BASIC17.84■□□□□ 0.45
CHMP1AQ9HD42 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC17.84■□□□□ 0.45
CHMP1AQ9HD42 RNF144A-201ENST00000320892 5743 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
CHMP1AQ9HD42 AC025164.2-201ENST00000501008 1898 ntTSL 5 BASIC17.84■□□□□ 0.45
CHMP1AQ9HD42 LRP5L-203ENST00000444995 1714 ntAPPRIS ALT2 TSL 5 BASIC17.84■□□□□ 0.45
CHMP1AQ9HD42 CCKBR-206ENST00000532715 1734 ntTSL 3 BASIC17.84■□□□□ 0.45
CHMP1AQ9HD42 HAUS4-201ENST00000206474 1642 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
CHMP1AQ9HD42 CYP27A1-201ENST00000258415 2286 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
CHMP1AQ9HD42 SMIM19-203ENST00000417410 1466 ntAPPRIS P1 TSL 2 BASIC17.83■□□□□ 0.45
CHMP1AQ9HD42 TMCC2-209ENST00000637895 1455 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
CHMP1AQ9HD42 CBWD3-201ENST00000360171 2165 ntAPPRIS P2 TSL 1 (best) BASIC17.83■□□□□ 0.45
CHMP1AQ9HD42 ZNF579-201ENST00000325421 2899 ntAPPRIS P1 TSL 2 BASIC17.83■□□□□ 0.45
CHMP1AQ9HD42 DAG1-219ENST00000538711 5582 ntAPPRIS P1 TSL 5 BASIC17.83■□□□□ 0.45
CHMP1AQ9HD42 CPNE9-203ENST00000383832 2068 ntAPPRIS P1 TSL 5 BASIC17.83■□□□□ 0.45
CHMP1AQ9HD42 RBKS-201ENST00000302188 1973 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
CHMP1AQ9HD42 TRABD2A-203ENST00000409520 1975 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
CHMP1AQ9HD42 TNFRSF25-201ENST00000348333 1119 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
CHMP1AQ9HD42 TNFRSF25-202ENST00000351748 705 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
CHMP1AQ9HD42 P2RX2-205ENST00000352418 1200 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
CHMP1AQ9HD42 FDX2-202ENST00000393708 1012 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
CHMP1AQ9HD42 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
CHMP1AQ9HD42 AC136469.2-201ENST00000623944 1028 ntBASIC17.83■□□□□ 0.44
CHMP1AQ9HD42 FARSA-201ENST00000314606 1814 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
CHMP1AQ9HD42 TLE3-214ENST00000558939 6004 ntAPPRIS P4 TSL 1 (best) BASIC17.83■□□□□ 0.44
CHMP1AQ9HD42 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC17.83■□□□□ 0.44
CHMP1AQ9HD42 IQSEC1-201ENST00000273221 5279 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
CHMP1AQ9HD42 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC17.83■□□□□ 0.44
CHMP1AQ9HD42 RDX-202ENST00000405097 2761 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
CHMP1AQ9HD42 PEX5-204ENST00000412720 2105 ntTSL 2 BASIC17.83■□□□□ 0.44
CHMP1AQ9HD42 NTRK3-206ENST00000540489 2145 ntTSL 5 BASIC17.83■□□□□ 0.44
CHMP1AQ9HD42 CAMK2B-216ENST00000440254 2097 ntAPPRIS P4 TSL 1 (best) BASIC17.83■□□□□ 0.44
CHMP1AQ9HD42 GRINA-201ENST00000313269 1968 ntAPPRIS P1 TSL 5 BASIC17.82■□□□□ 0.44
CHMP1AQ9HD42 XPA-201ENST00000375128 1417 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
CHMP1AQ9HD42 STARD3NL-202ENST00000396013 1365 ntAPPRIS P1 TSL 5 BASIC17.82■□□□□ 0.44
CHMP1AQ9HD42 FLYWCH1-201ENST00000253928 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
CHMP1AQ9HD42 MAPRE3-203ENST00000405074 1801 ntTSL 3 BASIC17.82■□□□□ 0.44
CHMP1AQ9HD42 ANKLE1-204ENST00000594072 2294 ntTSL 5 BASIC17.82■□□□□ 0.44
CHMP1AQ9HD42 ZIM2-208ENST00000629319 2253 ntAPPRIS P1 TSL 5 BASIC17.82■□□□□ 0.44
CHMP1AQ9HD42 EMC9-201ENST00000216799 835 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
CHMP1AQ9HD42 SENCR-201ENST00000526269 1298 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
CHMP1AQ9HD42 AP005435.1-201ENST00000529293 1178 ntBASIC17.82■□□□□ 0.44
CHMP1AQ9HD42 AC007448.3-201ENST00000585193 689 ntTSL 2 BASIC17.82■□□□□ 0.44
CHMP1AQ9HD42 ZNF264-206ENST00000600531 774 ntTSL 2 BASIC17.82■□□□□ 0.44
CHMP1AQ9HD42 C16orf59-201ENST00000361837 1662 ntAPPRIS P2 TSL 1 (best) BASIC17.82■□□□□ 0.44
CHMP1AQ9HD42 TPM1-204ENST00000334895 1637 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
CHMP1AQ9HD42 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
CHMP1AQ9HD42 CRTC1-203ENST00000594658 2384 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
CHMP1AQ9HD42 SIX5-201ENST00000317578 3318 ntAPPRIS P2 TSL 1 (best) BASIC17.82■□□□□ 0.44
CHMP1AQ9HD42 NAPEPLD-208ENST00000427257 1822 ntAPPRIS P1 TSL 2 BASIC17.82■□□□□ 0.44
CHMP1AQ9HD42 FAM110D-201ENST00000374268 2858 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CHMP1AQ9HD42 SLC9A6-202ENST00000370698 4631 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
CHMP1AQ9HD42 RALGAPA1-219ENST00000637992 8512 ntTSL 5 BASIC17.81■□□□□ 0.44
CHMP1AQ9HD42 TERF2IP-201ENST00000300086 2118 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CHMP1AQ9HD42 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
CHMP1AQ9HD42 RITA1-201ENST00000548278 2053 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CHMP1AQ9HD42 ENKD1-206ENST00000602644 1353 ntTSL 5 BASIC17.81■□□□□ 0.44
CHMP1AQ9HD42 NDUFAF3-202ENST00000326925 2012 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CHMP1AQ9HD42 ZNF773-204ENST00000598770 2019 ntAPPRIS ALT2 TSL 2 BASIC17.81■□□□□ 0.44
CHMP1AQ9HD42 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CHMP1AQ9HD42 LINC01547-202ENST00000397841 2303 ntTSL 2 BASIC17.81■□□□□ 0.44
CHMP1AQ9HD42 CHRNA4-207ENST00000615287 5643 ntTSL 5 BASIC17.81■□□□□ 0.44
CHMP1AQ9HD42 CDK18-203ENST00000429964 1648 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CHMP1AQ9HD42 MOSPD3-204ENST00000424091 1115 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
CHMP1AQ9HD42 SLC47A1P1-202ENST00000449666 945 ntBASIC17.81■□□□□ 0.44
CHMP1AQ9HD42 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC17.81■□□□□ 0.44
CHMP1AQ9HD42 SERGEF-219ENST00000532265 1124 ntTSL 2 BASIC17.81■□□□□ 0.44
CHMP1AQ9HD42 AC011298.3-201ENST00000615796 283 ntBASIC17.81■□□□□ 0.44
CHMP1AQ9HD42 AC110285.2-201ENST00000571724 1565 ntTSL 2 BASIC17.81■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 27.1 ms