Protein–RNA interactions for Protein: Q96RI1

NR1H4, Bile acid receptor, humanhuman

Predicted RBP Predictions only

Length 486 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NR1H4Q96RI1 KIAA0895L-206ENST00000563902 2233 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
NR1H4Q96RI1 TDRKH-203ENST00000368824 2824 ntAPPRIS P2 TSL 1 (best) BASIC19.61■□□□□ 0.73
NR1H4Q96RI1 CDC42EP1-201ENST00000249014 2181 ntAPPRIS P2 TSL 1 (best) BASIC19.61■□□□□ 0.73
NR1H4Q96RI1 SAMD11-213ENST00000618181 2179 ntAPPRIS ALT2 TSL 5 BASIC19.61■□□□□ 0.73
NR1H4Q96RI1 NFATC1-201ENST00000253506 4642 ntAPPRIS P3 TSL 1 (best) BASIC19.61■□□□□ 0.73
NR1H4Q96RI1 LAPTM4B-204ENST00000619747 2758 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
NR1H4Q96RI1 MFSD3-201ENST00000301327 1548 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
NR1H4Q96RI1 PLK5-205ENST00000642079 1969 ntBASIC19.61■□□□□ 0.73
NR1H4Q96RI1 FAM109B-201ENST00000321753 2335 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
NR1H4Q96RI1 AC104002.3-202ENST00000557170 1100 ntTSL 3 BASIC19.61■□□□□ 0.73
NR1H4Q96RI1 COL4A3BP-201ENST00000261415 2262 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
NR1H4Q96RI1 LSR-214ENST00000621372 2274 ntAPPRIS P4 TSL 1 (best) BASIC19.61■□□□□ 0.73
NR1H4Q96RI1 DIP2A-203ENST00000435722 2760 ntTSL 2 BASIC19.61■□□□□ 0.73
NR1H4Q96RI1 KDM5C-203ENST00000375383 5122 ntAPPRIS ALT2 TSL 5 BASIC19.61■□□□□ 0.73
NR1H4Q96RI1 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
NR1H4Q96RI1 ANKDD1B-204ENST00000601380 2569 ntAPPRIS P1 TSL 5 BASIC19.61■□□□□ 0.73
NR1H4Q96RI1 SNAI3-AS1-202ENST00000563475 2081 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
NR1H4Q96RI1 RHOT2-201ENST00000315082 2539 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
NR1H4Q96RI1 PHF12-201ENST00000268756 2957 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
NR1H4Q96RI1 ERF-202ENST00000440177 2032 ntTSL 2 BASIC19.61■□□□□ 0.73
NR1H4Q96RI1 PNCK-215ENST00000447676 1585 ntTSL 2 BASIC19.61■□□□□ 0.73
NR1H4Q96RI1 MFSD1-219ENST00000622669 2361 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
NR1H4Q96RI1 AUH-201ENST00000303617 1490 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
NR1H4Q96RI1 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC19.6■□□□□ 0.73
NR1H4Q96RI1 NEU4-201ENST00000325935 2288 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
NR1H4Q96RI1 DLG3-202ENST00000374355 5074 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
NR1H4Q96RI1 EPN3-216ENST00000537145 2223 ntTSL 5 BASIC19.6■□□□□ 0.73
NR1H4Q96RI1 STARD3-201ENST00000336308 2132 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
NR1H4Q96RI1 IGFBP1-201ENST00000275525 1653 ntAPPRIS P2 TSL 1 (best) BASIC19.6■□□□□ 0.73
NR1H4Q96RI1 ZDHHC18-202ENST00000374142 5020 ntAPPRIS P2 TSL 1 (best) BASIC19.6■□□□□ 0.73
NR1H4Q96RI1 CDC42EP2-201ENST00000279249 2023 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
NR1H4Q96RI1 TP53RK-201ENST00000372102 2012 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
NR1H4Q96RI1 HERC2P9-201ENST00000507787 1023 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
NR1H4Q96RI1 OXLD1-203ENST00000571503 803 ntTSL 2 BASIC19.6■□□□□ 0.73
NR1H4Q96RI1 AC011551.1-201ENST00000614101 683 ntBASIC19.6■□□□□ 0.73
NR1H4Q96RI1 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
NR1H4Q96RI1 DET1-207ENST00000564406 2315 ntTSL 2 BASIC19.6■□□□□ 0.73
NR1H4Q96RI1 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC19.6■□□□□ 0.73
NR1H4Q96RI1 DUSP26-201ENST00000256261 1835 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
NR1H4Q96RI1 CBWD5-207ENST00000382405 1791 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
NR1H4Q96RI1 EIF5A-211ENST00000576930 1439 ntAPPRIS P1 TSL 5 BASIC19.59■□□□□ 0.73
NR1H4Q96RI1 CCDC106-205ENST00000588740 1404 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
NR1H4Q96RI1 FP325331.1-202ENST00000623531 1380 ntBASIC19.59■□□□□ 0.73
NR1H4Q96RI1 FAM69B-202ENST00000371692 1668 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
NR1H4Q96RI1 SH3BP2-204ENST00000452765 2265 ntAPPRIS P3 TSL 1 (best) BASIC19.59■□□□□ 0.73
NR1H4Q96RI1 AL390879.2-201ENST00000424306 2222 ntTSL 2 BASIC19.59■□□□□ 0.73
NR1H4Q96RI1 AC099778.1-201ENST00000568593 1911 ntBASIC19.59■□□□□ 0.73
NR1H4Q96RI1 CBWD3-213ENST00000618217 1611 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
NR1H4Q96RI1 BTBD11-201ENST00000280758 5767 ntAPPRIS P3 TSL 5 BASIC19.59■□□□□ 0.73
NR1H4Q96RI1 SLC25A1-202ENST00000451283 1514 ntTSL 2 BASIC19.59■□□□□ 0.73
NR1H4Q96RI1 UBA5-208ENST00000473651 1513 ntTSL 5 BASIC19.59■□□□□ 0.73
NR1H4Q96RI1 SEMA7A-203ENST00000543145 2304 ntTSL 2 BASIC19.59■□□□□ 0.73
NR1H4Q96RI1 MB21D2-201ENST00000392452 3368 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
NR1H4Q96RI1 CCT4-204ENST00000544079 2261 ntTSL 2 BASIC19.59■□□□□ 0.73
NR1H4Q96RI1 MED22-201ENST00000343730 1437 ntAPPRIS P4 TSL 1 (best) BASIC19.59■□□□□ 0.73
NR1H4Q96RI1 SYBU-201ENST00000276646 2870 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.73
NR1H4Q96RI1 STEAP2-207ENST00000402625 1372 ntTSL 5 BASIC19.58■□□□□ 0.73
NR1H4Q96RI1 CADPS2-202ENST00000334010 6045 ntAPPRIS ALT2 TSL 5 BASIC19.58■□□□□ 0.73
NR1H4Q96RI1 TMEM53-202ENST00000372237 2310 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
NR1H4Q96RI1 PGM1-205ENST00000540265 2345 ntTSL 2 BASIC19.58■□□□□ 0.73
NR1H4Q96RI1 KCNN2-207ENST00000610748 2091 ntTSL 3 BASIC19.58■□□□□ 0.73
NR1H4Q96RI1 OSCAR-208ENST00000611261 2061 ntAPPRIS P4 TSL 5 BASIC19.58■□□□□ 0.73
NR1H4Q96RI1 SPAST-203ENST00000615843 5212 ntAPPRIS P4 TSL 1 (best) BASIC19.58■□□□□ 0.73
NR1H4Q96RI1 TTC19-201ENST00000261647 3002 ntAPPRIS P2 TSL 1 (best) BASIC19.58■□□□□ 0.73
NR1H4Q96RI1 MZT1-201ENST00000377818 2299 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
NR1H4Q96RI1 MAPK9-202ENST00000347470 1509 ntTSL 5 BASIC19.58■□□□□ 0.73
NR1H4Q96RI1 MARK2-201ENST00000350490 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.73
NR1H4Q96RI1 UBE2I-213ENST00000566587 1098 ntAPPRIS P1 TSL 2 BASIC19.58■□□□□ 0.72
NR1H4Q96RI1 GNAS-AS1_1.1-201ENST00000621898 103 ntBASIC19.58■□□□□ 0.72
NR1H4Q96RI1 AC129492.7-201ENST00000622992 756 ntBASIC19.58■□□□□ 0.72
NR1H4Q96RI1 CDK13-202ENST00000340829 5066 ntAPPRIS ALT1 TSL 1 (best) BASIC19.58■□□□□ 0.72
NR1H4Q96RI1 DLGAP4-201ENST00000339266 5016 ntAPPRIS ALT2 TSL 5 BASIC19.58■□□□□ 0.72
NR1H4Q96RI1 PHF12-202ENST00000332830 4759 ntAPPRIS P1 TSL 2 BASIC19.58■□□□□ 0.72
NR1H4Q96RI1 SH2B3-201ENST00000341259 5406 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
NR1H4Q96RI1 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC19.58■□□□□ 0.72
NR1H4Q96RI1 UBALD1-201ENST00000283474 1413 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
NR1H4Q96RI1 ZC3H12D-201ENST00000409806 5791 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
NR1H4Q96RI1 PTPRE-201ENST00000254667 5331 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
NR1H4Q96RI1 NOXO1-201ENST00000354249 1618 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
NR1H4Q96RI1 SEPT5-201ENST00000383045 1588 ntTSL 5 BASIC19.57■□□□□ 0.72
NR1H4Q96RI1 LDHAL6A-202ENST00000396213 1716 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
NR1H4Q96RI1 MATN4-202ENST00000360607 2127 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
NR1H4Q96RI1 TMEM179-201ENST00000341595 2513 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
NR1H4Q96RI1 KLHL2-201ENST00000226725 3134 ntAPPRIS P3 TSL 1 (best) BASIC19.57■□□□□ 0.72
NR1H4Q96RI1 DMWD-201ENST00000270223 3305 ntAPPRIS P2 TSL 1 (best) BASIC19.57■□□□□ 0.72
NR1H4Q96RI1 PUS1-203ENST00000443358 1664 ntAPPRIS ALT2 TSL 1 (best) BASIC19.57■□□□□ 0.72
NR1H4Q96RI1 CFAP77-202ENST00000393215 901 ntAPPRIS ALT2 TSL 5 BASIC19.57■□□□□ 0.72
NR1H4Q96RI1 PSMG4-207ENST00000451246 824 ntTSL 3 BASIC19.57■□□□□ 0.72
NR1H4Q96RI1 C19orf25-202ENST00000436106 2403 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
NR1H4Q96RI1 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC19.57■□□□□ 0.72
NR1H4Q96RI1 MON1A-203ENST00000455683 1617 ntAPPRIS ALT2 TSL 1 (best) BASIC19.57■□□□□ 0.72
NR1H4Q96RI1 RNF146-203ENST00000368314 2369 ntAPPRIS ALT1 TSL 2 BASIC19.57■□□□□ 0.72
NR1H4Q96RI1 MBD3-201ENST00000156825 5518 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
NR1H4Q96RI1 ZNF419-205ENST00000424930 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC19.57■□□□□ 0.72
NR1H4Q96RI1 PRSS12-201ENST00000296498 4809 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
NR1H4Q96RI1 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC19.56■□□□□ 0.72
NR1H4Q96RI1 AL512408.1-201ENST00000569378 2000 ntBASIC19.56■□□□□ 0.72
NR1H4Q96RI1 MFHAS1-201ENST00000276282 6414 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
NR1H4Q96RI1 CACNA1A-227ENST00000636549 6792 ntAPPRIS ALT2 TSL 5 BASIC19.56■□□□□ 0.72
NR1H4Q96RI1 UMOD-203ENST00000396138 2399 ntAPPRIS ALT2 TSL 5 BASIC19.56■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 19.1 ms