Protein–RNA interactions for Protein: Q8NHQ9

DDX55, ATP-dependent RNA helicase DDX55, humanhuman

Known RBP eCLIP

Length 600 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55Q8NHQ9 PRKACA-201ENST00000308677 2677 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.216e-8■■■□□ 15.4
DDX55Q8NHQ9 CDKN1A-201ENST00000244741 2180 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.722e-7■■■□□ 15.4
DDX55Q8NHQ9 CDKN1A-204ENST00000448526 2104 ntAPPRIS P1 TSL 3 BASIC18.47■□□□□ 0.552e-7■■■□□ 15.4
DDX55Q8NHQ9 CDKN1A-203ENST00000405375 2267 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.372e-7■■■□□ 15.4
DDX55Q8NHQ9 CDKN1A-208ENST00000615513 2102 ntAPPRIS P1 TSL 2 BASIC15.88■□□□□ 0.132e-7■■■□□ 15.4
DDX55Q8NHQ9 PRKACA-202ENST00000350356 3105 ntTSL 212.53□□□□□ -0.46e-8■■■□□ 15.4
DDX55Q8NHQ9 MYDGF-203ENST00000599630 713 ntTSL 2 BASIC27.06■■□□□ 1.922e-7■■■□□ 15.4
DDX55Q8NHQ9 AES-202ENST00000327141 1608 ntAPPRIS P1 TSL 1 (best) BASIC39.62■■■■□ 3.936e-11■■■□□ 15.4
DDX55Q8NHQ9 HUWE1-202ENST00000262854 14739 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.531e-8■■■□□ 15.4
DDX55Q8NHQ9 HUWE1-204ENST00000426907 4805 ntTSL 59.99□□□□□ -0.811e-8■■■□□ 15.4
DDX55Q8NHQ9 HUWE1-203ENST00000342160 14796 ntAPPRIS P1 TSL 5 BASIC7.95□□□□□ -1.141e-8■■■□□ 15.4
DDX55Q8NHQ9 HUWE1-214ENST00000612484 14311 ntTSL 5 BASIC6.44□□□□□ -1.381e-8■■■□□ 15.4
DDX55Q8NHQ9 ATP6V0D1-201ENST00000290949 1716 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.378e-9■■■□□ 15.3
DDX55Q8NHQ9 ATP6V0D1-207ENST00000563305 1656 ntTSL 517.19■□□□□ 0.348e-9■■■□□ 15.3
DDX55Q8NHQ9 ATP6V0D1-218ENST00000602876 1554 ntTSL 5 BASIC15.66■□□□□ 0.18e-9■■■□□ 15.3
DDX55Q8NHQ9 ATP6V0D1-217ENST00000568620 3390 ntTSL 212.27□□□□□ -0.458e-9■■■□□ 15.3
DDX55Q8NHQ9 TRIB3-201ENST00000217233 2499 ntAPPRIS P3 TSL 1 (best) BASIC21.71■■□□□ 1.073e-9■■■□□ 15.3
DDX55Q8NHQ9 PABPC1-218ENST00000521865 628 ntTSL 226.04■■□□□ 1.761e-323■■■□□ 15.3
DDX55Q8NHQ9 PABPC1-217ENST00000521067 492 ntTSL 325.4■■□□□ 1.661e-323■■■□□ 15.3
DDX55Q8NHQ9 PABPC1-215ENST00000520804 493 ntTSL 224.5■■□□□ 1.511e-323■■■□□ 15.3
DDX55Q8NHQ9 PABPC1-221ENST00000522720 593 ntTSL 419.99■□□□□ 0.791e-323■■■□□ 15.3
DDX55Q8NHQ9 PABPC1-210ENST00000519363 453 ntTSL 417.24■□□□□ 0.351e-323■■■□□ 15.3
DDX55Q8NHQ9 PABPC1-205ENST00000518196 631 ntTSL 315.37■□□□□ 0.051e-323■■■□□ 15.3
DDX55Q8NHQ9 PABPC1-214ENST00000520142 754 ntTSL 313.57□□□□□ -0.241e-323■■■□□ 15.3
DDX55Q8NHQ9 ALDH4A1-201ENST00000290597 2124 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.622e-6■■■□□ 15.3
DDX55Q8NHQ9 ALDH4A1-206ENST00000538839 2957 ntTSL 1 (best) BASIC15.35■□□□□ 0.052e-6■■■□□ 15.3
DDX55Q8NHQ9 ALDH4A1-202ENST00000375341 3363 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.32e-6■■■□□ 15.3
DDX55Q8NHQ9 AL080251.1-201ENST00000494072 4369 ntAPPRIS P1 TSL 5 BASIC11.63□□□□□ -0.552e-6■■■□□ 15.3
DDX55Q8NHQ9 COX6B1-204ENST00000592141 660 ntAPPRIS P1 TSL 3 BASIC18.67■□□□□ 0.583e-8■■■□□ 15.3
DDX55Q8NHQ9 COX6B1-202ENST00000392201 435 ntAPPRIS P1 TSL 3 BASIC10.28□□□□□ -0.763e-8■■■□□ 15.3
DDX55Q8NHQ9 COX6B1-203ENST00000590618 290 ntTSL 38.37□□□□□ -1.073e-8■■■□□ 15.3
DDX55Q8NHQ9 BST2-201ENST00000252593 1019 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.523e-7■■■□□ 15.3
DDX55Q8NHQ9 BST2-203ENST00000533098 459 ntTSL 211.82□□□□□ -0.521e-6■■■□□ 15.3
DDX55Q8NHQ9 BST2-202ENST00000527220 335 ntTSL 211.61□□□□□ -0.551e-6■■■□□ 15.3
DDX55Q8NHQ9 TMEM2-202ENST00000377044 6523 ntAPPRIS P3 TSL 1 (best) BASIC14.8□□□□□ -0.042e-6■■■□□ 15.3
DDX55Q8NHQ9 MRFAP1L1-201ENST00000320848 1593 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.093e-9■■■□□ 15.3
DDX55Q8NHQ9 MRFAP1L1-202ENST00000500563 2127 nt14.94□□□□□ -0.023e-9■■■□□ 15.3
DDX55Q8NHQ9 HSP90AA1-201ENST00000216281 3379 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.033e-58■■■□□ 15.3
DDX55Q8NHQ9 HSP90AA1-202ENST00000334701 3510 ntTSL 1 (best) BASIC13.25□□□□□ -0.293e-58■■■□□ 15.3
DDX55Q8NHQ9 MRPL38-201ENST00000309352 1888 ntAPPRIS P1 TSL 1 (best) BASIC25.18■■□□□ 1.623e-7■■■□□ 15.3
DDX55Q8NHQ9 AC087289.3-201ENST00000590947 1886 ntAPPRIS ALT2 TSL 218.79■□□□□ 0.63e-7■■■□□ 15.3
DDX55Q8NHQ9 MRPL38-217ENST00000588620 498 ntTSL 315.72■□□□□ 0.113e-6■■■□□ 15.3
DDX55Q8NHQ9 MRPL38-212ENST00000486101 767 ntTSL 214.93□□□□□ -0.023e-8■■■□□ 15.3
DDX55Q8NHQ9 MRPL38-211ENST00000483393 525 ntTSL 211.84□□□□□ -0.513e-6■■■□□ 15.3
DDX55Q8NHQ9 MRPL38-210ENST00000480203 534 ntTSL 310.92□□□□□ -0.663e-6■■■□□ 15.3
DDX55Q8NHQ9 C16orf58-202ENST00000430477 2471 ntAPPRIS P2 TSL 1 (best) BASIC19.76■□□□□ 0.753e-6■■■□□ 15.3
DDX55Q8NHQ9 C16orf58-201ENST00000327237 2793 ntAPPRIS P2 TSL 1 (best) BASIC17.62■□□□□ 0.413e-6■■■□□ 15.3
DDX55Q8NHQ9 C16orf58-211ENST00000570164 2783 ntAPPRIS ALT1 TSL 5 BASIC17.59■□□□□ 0.413e-6■■■□□ 15.3
DDX55Q8NHQ9 C16orf58-210ENST00000568491 2422 ntTSL 216.48■□□□□ 0.233e-6■■■□□ 15.3
DDX55Q8NHQ9 PEPD-211ENST00000593085 1763 ntTSL 222.75■■□□□ 1.231e-9■■■□□ 15.3
DDX55Q8NHQ9 PEPD-203ENST00000436370 1638 ntTSL 2 BASIC21.24■□□□□ 0.991e-9■■■□□ 15.3
DDX55Q8NHQ9 PEPD-210ENST00000591968 943 ntTSL 218.97■□□□□ 0.631e-9■■■□□ 15.3
DDX55Q8NHQ9 PEPD-202ENST00000397032 1754 ntTSL 2 BASIC18.87■□□□□ 0.611e-9■■■□□ 15.3
DDX55Q8NHQ9 PEPD-201ENST00000244137 1910 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.391e-9■■■□□ 15.3
DDX55Q8NHQ9 PEPD-206ENST00000589598 596 ntTSL 312.06□□□□□ -0.481e-9■■■□□ 15.3
DDX55Q8NHQ9 PCGF5-204ENST00000543648 7144 ntAPPRIS P1 TSL 2 BASIC6.64□□□□□ -1.351e-9■■■□□ 15.3
DDX55Q8NHQ9 PCGF5-205ENST00000614189 7037 ntAPPRIS P1 TSL 1 (best) BASIC6.37□□□□□ -1.391e-9■■■□□ 15.3
DDX55Q8NHQ9 PCGF5-201ENST00000336126 7018 ntAPPRIS P1 TSL 1 (best) BASIC6.01□□□□□ -1.451e-9■■■□□ 15.3
DDX55Q8NHQ9 AKT1-211ENST00000554848 1595 ntAPPRIS P1 TSL 1 (best) BASIC22.76■■□□□ 1.235e-11■■■□□ 15.3
DDX55Q8NHQ9 AKT1-209ENST00000554585 858 ntTSL 320.73■□□□□ 0.915e-11■■■□□ 15.3
DDX55Q8NHQ9 AKT1-204ENST00000544168 1564 ntTSL 220.39■□□□□ 0.855e-11■■■□□ 15.3
DDX55Q8NHQ9 PTK7-211ENST00000473339 870 ntTSL 320■□□□□ 0.791e-8■■■□□ 15.3
DDX55Q8NHQ9 PTK7-220ENST00000497957 713 ntTSL 318.62■□□□□ 0.571e-8■■■□□ 15.3
DDX55Q8NHQ9 PTK7-218ENST00000493339 2987 ntTSL 213.88□□□□□ -0.191e-8■■■□□ 15.3
DDX55Q8NHQ9 KLF6-202ENST00000380946 744 ntTSL 226.27■■□□□ 1.83e-8■■■□□ 15.3
DDX55Q8NHQ9 WDR74-202ENST00000311713 1153 ntTSL 1 (best) BASIC24.67■■□□□ 1.543e-8■■■□□ 15.3
DDX55Q8NHQ9 WDR74-201ENST00000278856 1289 ntAPPRIS P1 TSL 1 (best) BASIC24.22■■□□□ 1.473e-8■■■□□ 15.3
DDX55Q8NHQ9 FAM3A-203ENST00000369641 1359 ntTSL 5 BASIC23.55■■□□□ 1.363e-8■■■□□ 15.3
DDX55Q8NHQ9 MECR-210ENST00000475773 780 ntTSL 323.27■■□□□ 1.323e-8■■■□□ 15.3
DDX55Q8NHQ9 MECR-214ENST00000483435 571 ntTSL 221.88■■□□□ 1.093e-8■■■□□ 15.3
DDX55Q8NHQ9 FAM3A-205ENST00000393572 1041 ntTSL 2 BASIC21.54■■□□□ 1.043e-8■■■□□ 15.3
DDX55Q8NHQ9 RHOC-217ENST00000527563 579 ntTSL 321.21■□□□□ 0.993e-8■■■□□ 15.3
DDX55Q8NHQ9 WDR74-213ENST00000542347 988 ntTSL 221.16■□□□□ 0.983e-8■■■□□ 15.3
DDX55Q8NHQ9 KLF6-204ENST00000469435 2169 ntTSL 1 (best) BASIC21.04■□□□□ 0.963e-8■■■□□ 15.3
DDX55Q8NHQ9 C1orf159-205ENST00000421241 1841 ntAPPRIS P3 TSL 2 BASIC20.25■□□□□ 0.833e-8■■■□□ 15.3
DDX55Q8NHQ9 WDR74-204ENST00000525239 1736 ntAPPRIS P1 TSL 2 BASIC20.22■□□□□ 0.833e-8■■■□□ 15.3
DDX55Q8NHQ9 IFT20-202ENST00000357896 974 ntTSL 1 (best) BASIC20.2■□□□□ 0.823e-8■■■□□ 15.3
DDX55Q8NHQ9 IFT20-209ENST00000579419 787 ntAPPRIS ALT1 TSL 3 BASIC20.18■□□□□ 0.823e-8■■■□□ 15.3
DDX55Q8NHQ9 C1orf159-212ENST00000467751 2099 ntTSL 220.06■□□□□ 0.83e-8■■■□□ 15.3
DDX55Q8NHQ9 ANXA6-201ENST00000354546 2593 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.81e-10■■■□□ 15.3
DDX55Q8NHQ9 WDR74-206ENST00000529106 1366 ntAPPRIS P1 TSL 2 BASIC19.96■□□□□ 0.793e-8■■■□□ 15.3
DDX55Q8NHQ9 MECR-208ENST00000473030 919 ntTSL 319.89■□□□□ 0.773e-8■■■□□ 15.3
DDX55Q8NHQ9 CCAR2-204ENST00000520536 2173 ntTSL 219.54■□□□□ 0.724e-11■■■□□ 15.3
DDX55Q8NHQ9 IFT20-203ENST00000395418 825 ntAPPRIS P4 TSL 1 (best) BASIC19.4■□□□□ 0.73e-8■■■□□ 15.3
DDX55Q8NHQ9 IFT20-216ENST00000588477 774 ntTSL 5 BASIC19.4■□□□□ 0.73e-8■■■□□ 15.3
DDX55Q8NHQ9 IFT20-215ENST00000585313 852 ntAPPRIS P4 TSL 3 BASIC18.96■□□□□ 0.633e-8■■■□□ 15.3
DDX55Q8NHQ9 C1orf159-204ENST00000379339 2429 ntAPPRIS ALT2 TSL 2 BASIC18.91■□□□□ 0.623e-8■■■□□ 15.3
DDX55Q8NHQ9 IFT20-214ENST00000585089 1071 ntTSL 1 (best) BASIC18.82■□□□□ 0.63e-8■■■□□ 15.3
DDX55Q8NHQ9 CCAR2-209ENST00000521436 1840 ntTSL 518.56■□□□□ 0.564e-11■■■□□ 15.3
DDX55Q8NHQ9 MECR-201ENST00000263702 1353 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.563e-8■■■□□ 15.3
DDX55Q8NHQ9 C1orf159-203ENST00000379325 2010 ntTSL 218.45■□□□□ 0.543e-8■■■□□ 15.3
DDX55Q8NHQ9 C1orf159-210ENST00000464905 650 ntTSL 318.2■□□□□ 0.53e-8■■■□□ 15.3
DDX55Q8NHQ9 WDR46-235ENST00000473611 872 ntTSL 318.12■□□□□ 0.493e-8■■■□□ 15.3
DDX55Q8NHQ9 WDR46-233ENST00000461951 669 ntTSL 318.12■□□□□ 0.493e-8■■■□□ 15.3
DDX55Q8NHQ9 ANXA6-202ENST00000377751 1430 ntTSL 2 BASIC17.9■□□□□ 0.461e-10■■■□□ 15.3
DDX55Q8NHQ9 FAM3A-218ENST00000475657 585 ntTSL 217.89■□□□□ 0.453e-8■■■□□ 15.3
DDX55Q8NHQ9 C1orf159-211ENST00000465822 1933 ntTSL 217.85■□□□□ 0.453e-8■■■□□ 15.3
DDX55Q8NHQ9 WDR74-205ENST00000525752 1724 ntTSL 5 BASIC17.58■□□□□ 0.43e-8■■■□□ 15.3
DDX55Q8NHQ9 ANXA6-211ENST00000521512 1793 ntTSL 5 BASIC17.4■□□□□ 0.381e-10■■■□□ 15.3
DDX55Q8NHQ9 CCAR2-205ENST00000520738 2633 ntTSL 217.04■□□□□ 0.324e-11■■■□□ 15.3
Retrieved 100 of 15,504 protein–RNA pairs in 159.8 ms