Protein–RNA interactions for Protein: Q8NCR9

CLRN3, Clarin-3, humanhuman

Predictions only

Length 226 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN3Q8NCR9 MIR7108-201ENST00000614319 87 ntBASIC16.64■□□□□ 0.25
CLRN3Q8NCR9 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
CLRN3Q8NCR9 UMOD-201ENST00000302509 2477 ntAPPRIS P3 TSL 5 BASIC16.64■□□□□ 0.25
CLRN3Q8NCR9 RBL2-201ENST00000262133 4906 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
CLRN3Q8NCR9 KSR1-205ENST00000509603 2731 ntAPPRIS ALT2 TSL 5 BASIC16.64■□□□□ 0.25
CLRN3Q8NCR9 WFDC1-201ENST00000219454 1534 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
CLRN3Q8NCR9 SPATA20-226ENST00000619622 2769 ntAPPRIS P2 TSL 5 BASIC16.64■□□□□ 0.25
CLRN3Q8NCR9 GAS7-205ENST00000542249 1799 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
CLRN3Q8NCR9 ACAP3-202ENST00000354700 3896 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
CLRN3Q8NCR9 BEGAIN-211ENST00000637646 2911 ntTSL 5 BASIC16.63■□□□□ 0.25
CLRN3Q8NCR9 FEZF1-203ENST00000442488 2099 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CLRN3Q8NCR9 PHLDB2-210ENST00000478922 1861 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
CLRN3Q8NCR9 CCDC120-204ENST00000597275 2752 ntAPPRIS P3 TSL 2 BASIC16.63■□□□□ 0.25
CLRN3Q8NCR9 PCDHB18P-201ENST00000524813 2368 ntBASIC16.63■□□□□ 0.25
CLRN3Q8NCR9 AC093503.3-201ENST00000624917 2352 ntBASIC16.63■□□□□ 0.25
CLRN3Q8NCR9 FAM3A-202ENST00000359889 1712 ntAPPRIS P1 TSL 2 BASIC16.63■□□□□ 0.25
CLRN3Q8NCR9 AL355987.1-201ENST00000435202 2420 ntAPPRIS P1 TSL 2 BASIC16.63■□□□□ 0.25
CLRN3Q8NCR9 GADD45G-201ENST00000252506 1065 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CLRN3Q8NCR9 AC016910.1-201ENST00000422799 1046 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
CLRN3Q8NCR9 CPEB1-214ENST00000617522 2220 ntTSL 5 BASIC16.63■□□□□ 0.25
CLRN3Q8NCR9 PACSIN3-211ENST00000539589 2009 ntAPPRIS P1 TSL 2 BASIC16.63■□□□□ 0.25
CLRN3Q8NCR9 RNF114-201ENST00000244061 2503 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CLRN3Q8NCR9 ZBTB16-201ENST00000335953 2523 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CLRN3Q8NCR9 BLOC1S4-201ENST00000320776 1617 ntAPPRIS P1 BASIC16.63■□□□□ 0.25
CLRN3Q8NCR9 CNTNAP3B-203ENST00000377561 5379 ntAPPRIS P2 TSL 1 (best) BASIC16.63■□□□□ 0.25
CLRN3Q8NCR9 FAM110A-206ENST00000541082 1614 ntAPPRIS P1 TSL 3 BASIC16.63■□□□□ 0.25
CLRN3Q8NCR9 AC112907.3-201ENST00000577781 2400 ntBASIC16.62■□□□□ 0.25
CLRN3Q8NCR9 AC068446.2-201ENST00000500487 2165 ntTSL 2 BASIC16.62■□□□□ 0.25
CLRN3Q8NCR9 NFATC1-210ENST00000587635 2195 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
CLRN3Q8NCR9 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC16.62■□□□□ 0.25
CLRN3Q8NCR9 TRAK1-209ENST00000487159 5536 ntAPPRIS ALT2 TSL 5 BASIC16.62■□□□□ 0.25
CLRN3Q8NCR9 ATP2A2-201ENST00000308664 4453 ntAPPRIS ALT1 TSL 1 (best) BASIC16.62■□□□□ 0.25
CLRN3Q8NCR9 LAYN-202ENST00000375615 1836 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
CLRN3Q8NCR9 TPST1-201ENST00000304842 2116 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
CLRN3Q8NCR9 ALKAL1-201ENST00000358543 1217 ntAPPRIS P2 TSL 1 (best) BASIC16.62■□□□□ 0.25
CLRN3Q8NCR9 CHST11-202ENST00000546689 756 ntTSL 2 BASIC16.62■□□□□ 0.25
CLRN3Q8NCR9 GMPPA-205ENST00000373917 1630 ntTSL 5 BASIC16.62■□□□□ 0.25
CLRN3Q8NCR9 TRA2A-212ENST00000621813 1931 ntAPPRIS ALT2 TSL 2 BASIC16.62■□□□□ 0.25
CLRN3Q8NCR9 RGL3-202ENST00000393423 2278 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
CLRN3Q8NCR9 OTUD1-201ENST00000376495 2933 ntAPPRIS P1 BASIC16.62■□□□□ 0.25
CLRN3Q8NCR9 RETREG1-201ENST00000306320 3268 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
CLRN3Q8NCR9 GALNS-201ENST00000268695 2363 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
CLRN3Q8NCR9 RHOC-202ENST00000339083 1418 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
CLRN3Q8NCR9 CIDEB-202ENST00000336557 2409 ntAPPRIS P1 TSL 2 BASIC16.61■□□□□ 0.25
CLRN3Q8NCR9 FAM53A-207ENST00000489363 2776 ntTSL 2 BASIC16.61■□□□□ 0.25
CLRN3Q8NCR9 IRF3-207ENST00000593922 1494 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
CLRN3Q8NCR9 C10orf91-202ENST00000392630 1846 ntTSL 2 BASIC16.61■□□□□ 0.25
CLRN3Q8NCR9 SNX14-210ENST00000505648 3193 ntTSL 2 BASIC16.61■□□□□ 0.25
CLRN3Q8NCR9 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
CLRN3Q8NCR9 BCL7A-201ENST00000261822 2581 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
CLRN3Q8NCR9 KRT6C-201ENST00000252250 2289 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
CLRN3Q8NCR9 KRT6B-201ENST00000252252 2282 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
CLRN3Q8NCR9 NTRK1-203ENST00000392302 2609 ntTSL 5 BASIC16.61■□□□□ 0.25
CLRN3Q8NCR9 CFAP99-206ENST00000616117 1941 ntAPPRIS P1 TSL 5 BASIC16.61■□□□□ 0.25
CLRN3Q8NCR9 RANBP1-202ENST00000402752 1132 ntAPPRIS ALT1 TSL 1 (best) BASIC16.61■□□□□ 0.25
CLRN3Q8NCR9 HES6-205ENST00000409356 528 ntTSL 2 BASIC16.61■□□□□ 0.25
CLRN3Q8NCR9 AC187653.1-201ENST00000506382 702 ntAPPRIS P1 TSL 5 BASIC16.61■□□□□ 0.25
CLRN3Q8NCR9 MAEA-201ENST00000264750 2058 ntTSL 2 BASIC16.61■□□□□ 0.25
CLRN3Q8NCR9 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC16.61■□□□□ 0.25
CLRN3Q8NCR9 SMPD4-202ENST00000409031 4896 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
CLRN3Q8NCR9 BBS5-202ENST00000392663 3107 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
CLRN3Q8NCR9 SPOP-206ENST00000504102 1865 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
CLRN3Q8NCR9 FOXP1-214ENST00000493089 2703 ntAPPRIS ALT1 TSL 2 BASIC16.61■□□□□ 0.25
CLRN3Q8NCR9 THOP1-201ENST00000307741 4804 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
CLRN3Q8NCR9 AL391650.1-201ENST00000448923 1468 ntAPPRIS P1 TSL 2 BASIC16.61■□□□□ 0.25
CLRN3Q8NCR9 PACRGL-201ENST00000295290 1937 ntTSL 5 BASIC16.6■□□□□ 0.25
CLRN3Q8NCR9 LHPP-201ENST00000368839 1522 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
CLRN3Q8NCR9 AC106820.2-201ENST00000563775 3264 ntBASIC16.6■□□□□ 0.25
CLRN3Q8NCR9 MTNR1B-201ENST00000257068 1565 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
CLRN3Q8NCR9 TRAM1L1-201ENST00000310754 2023 ntAPPRIS P1 BASIC16.6■□□□□ 0.25
CLRN3Q8NCR9 SLC35E4-202ENST00000406566 2081 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
CLRN3Q8NCR9 IRF3-227ENST00000600911 1637 ntTSL 5 BASIC16.6■□□□□ 0.25
CLRN3Q8NCR9 FGFR2-208ENST00000360144 3001 ntTSL 2 BASIC16.6■□□□□ 0.25
CLRN3Q8NCR9 STARD3NL-201ENST00000009041 1728 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
CLRN3Q8NCR9 SENP6-201ENST00000327284 2700 ntTSL 2 BASIC16.6■□□□□ 0.25
CLRN3Q8NCR9 MAP4K3-211ENST00000484274 407 ntTSL 2 BASIC16.6■□□□□ 0.25
CLRN3Q8NCR9 MIR3960-201ENST00000583311 91 ntBASIC16.6■□□□□ 0.25
CLRN3Q8NCR9 LAMP5-AS1-201ENST00000443469 1928 ntTSL 2 BASIC16.6■□□□□ 0.25
CLRN3Q8NCR9 CERS1-202ENST00000542296 1947 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
CLRN3Q8NCR9 WASF1-202ENST00000359451 3075 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
CLRN3Q8NCR9 NOMO1-201ENST00000287667 4355 ntAPPRIS P2 TSL 1 (best) BASIC16.6■□□□□ 0.25
CLRN3Q8NCR9 GADD45A-202ENST00000370986 1496 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
CLRN3Q8NCR9 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
CLRN3Q8NCR9 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
CLRN3Q8NCR9 DNM1-206ENST00000475805 2710 ntAPPRIS ALT1 TSL 2 BASIC16.6■□□□□ 0.25
CLRN3Q8NCR9 MFF-203ENST00000349901 1716 ntTSL 2 BASIC16.59■□□□□ 0.25
CLRN3Q8NCR9 PLIN5-201ENST00000381848 2470 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
CLRN3Q8NCR9 SLC1A6-202ENST00000430939 1794 ntTSL 2 BASIC16.59■□□□□ 0.25
CLRN3Q8NCR9 PDK3-201ENST00000379162 1809 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
CLRN3Q8NCR9 NR1H2-204ENST00000593926 1828 ntAPPRIS P2 TSL 5 BASIC16.59■□□□□ 0.25
CLRN3Q8NCR9 SNTB2-201ENST00000336278 9789 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
CLRN3Q8NCR9 ANKRD6-202ENST00000369408 5258 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
CLRN3Q8NCR9 CTXN1-201ENST00000318978 1274 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
CLRN3Q8NCR9 CAAP1-205ENST00000520187 773 ntTSL 5 BASIC16.59■□□□□ 0.25
CLRN3Q8NCR9 MFSD6L-201ENST00000329805 2188 ntAPPRIS P1 BASIC16.59■□□□□ 0.25
CLRN3Q8NCR9 MORF4L1-201ENST00000331268 2359 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
CLRN3Q8NCR9 INPP5J-207ENST00000405300 2515 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
CLRN3Q8NCR9 ZC3H12D-201ENST00000409806 5791 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
CLRN3Q8NCR9 PFKP-201ENST00000381072 1698 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
CLRN3Q8NCR9 TMC6-203ENST00000392467 2833 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 26.9 ms