Protein–RNA interactions for Protein: Q8N3C7

CLIP4, CAP-Gly domain-containing linker protein 4, humanhuman

Predictions only

Length 705 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP4Q8N3C7 HSD11B1L-218ENST00000581773 1687 ntAPPRIS P3 TSL 1 (best) BASIC19.46■□□□□ 0.71
CLIP4Q8N3C7 ZNF511-202ENST00000361518 1520 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
CLIP4Q8N3C7 URAD-201ENST00000332715 931 ntAPPRIS P1 TSL 5 BASIC19.46■□□□□ 0.71
CLIP4Q8N3C7 C11orf91-201ENST00000379011 811 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
CLIP4Q8N3C7 MIR572-201ENST00000384983 95 ntBASIC19.46■□□□□ 0.71
CLIP4Q8N3C7 HES6-202ENST00000409002 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
CLIP4Q8N3C7 SUDS3P1-201ENST00000505831 966 ntBASIC19.46■□□□□ 0.71
CLIP4Q8N3C7 LRMDA-215ENST00000611255 1040 ntAPPRIS ALT2 TSL 5 BASIC19.46■□□□□ 0.71
CLIP4Q8N3C7 TMEM206-205ENST00000535273 2119 ntTSL 2 BASIC19.46■□□□□ 0.71
CLIP4Q8N3C7 RNF38-205ENST00000377877 1974 ntTSL 2 BASIC19.46■□□□□ 0.71
CLIP4Q8N3C7 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
CLIP4Q8N3C7 DISC1-213ENST00000537876 2349 ntAPPRIS ALT2 TSL 2 BASIC19.46■□□□□ 0.71
CLIP4Q8N3C7 UPF1-207ENST00000599848 5311 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
CLIP4Q8N3C7 CXCL16-203ENST00000574412 1668 ntAPPRIS P2 TSL 1 (best) BASIC19.46■□□□□ 0.71
CLIP4Q8N3C7 LYPD1-202ENST00000397463 1891 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
CLIP4Q8N3C7 SMPD5-201ENST00000528912 1390 ntTSL 5 BASIC19.45■□□□□ 0.7
CLIP4Q8N3C7 CELF2-213ENST00000633077 1733 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
CLIP4Q8N3C7 C12orf76-203ENST00000546651 1755 ntTSL 2 BASIC19.45■□□□□ 0.7
CLIP4Q8N3C7 KANK3-203ENST00000593649 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
CLIP4Q8N3C7 RUSC1-AS1-203ENST00000450199 1636 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
CLIP4Q8N3C7 PRKCZ-AS1-201ENST00000333854 1253 ntTSL 2 BASIC19.45■□□□□ 0.7
CLIP4Q8N3C7 CDC37L1-202ENST00000381858 1244 ntTSL 5 BASIC19.45■□□□□ 0.7
CLIP4Q8N3C7 PLPP5-201ENST00000419686 794 ntTSL 2 BASIC19.45■□□□□ 0.7
CLIP4Q8N3C7 LINC01574-201ENST00000512115 560 ntTSL 2 BASIC19.45■□□□□ 0.7
CLIP4Q8N3C7 ZDHHC7-203ENST00000564466 1488 ntTSL 5 BASIC19.45■□□□□ 0.7
CLIP4Q8N3C7 IFNGR2-203ENST00000405436 1684 ntTSL 5 BASIC19.45■□□□□ 0.7
CLIP4Q8N3C7 FAM118B-209ENST00000533050 2402 ntAPPRIS P3 TSL 1 (best) BASIC19.45■□□□□ 0.7
CLIP4Q8N3C7 TMEM125-201ENST00000432792 1850 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
CLIP4Q8N3C7 BX005040.4-201ENST00000637145 1518 ntBASIC19.45■□□□□ 0.7
CLIP4Q8N3C7 KCNQ1-202ENST00000335475 2159 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
CLIP4Q8N3C7 PLEKHH3-204ENST00000591022 2983 ntAPPRIS P2 TSL 1 (best) BASIC19.44■□□□□ 0.7
CLIP4Q8N3C7 SPTBN4-201ENST00000338932 8686 ntAPPRIS ALT1 TSL 5 BASIC19.44■□□□□ 0.7
CLIP4Q8N3C7 DISC1-202ENST00000317586 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
CLIP4Q8N3C7 PAQR6-213ENST00000612424 2037 ntTSL 2 BASIC19.44■□□□□ 0.7
CLIP4Q8N3C7 NEU4-205ENST00000407683 2273 ntAPPRIS P1 TSL 2 BASIC19.44■□□□□ 0.7
CLIP4Q8N3C7 OLA1-204ENST00000409546 2071 ntTSL 5 BASIC19.44■□□□□ 0.7
CLIP4Q8N3C7 DHRS2-202ENST00000344777 1678 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
CLIP4Q8N3C7 AC005224.4-201ENST00000583262 1652 ntBASIC19.44■□□□□ 0.7
CLIP4Q8N3C7 PRR7-201ENST00000323249 1480 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CLIP4Q8N3C7 AL390816.2-201ENST00000554252 737 ntTSL 3 BASIC19.44■□□□□ 0.7
CLIP4Q8N3C7 AC009097.2-201ENST00000562763 465 ntTSL 2 BASIC19.44■□□□□ 0.7
CLIP4Q8N3C7 PALM-207ENST00000590161 2137 ntTSL 4 BASIC19.44■□□□□ 0.7
CLIP4Q8N3C7 AL139246.5-201ENST00000606645 996 ntBASIC19.44■□□□□ 0.7
CLIP4Q8N3C7 CCDC107-205ENST00000421582 1324 ntAPPRIS ALT2 TSL 2 BASIC19.44■□□□□ 0.7
CLIP4Q8N3C7 ZFAND2B-202ENST00000409097 1765 ntTSL 2 BASIC19.44■□□□□ 0.7
CLIP4Q8N3C7 SRRM3-204ENST00000611745 3612 ntAPPRIS P1 TSL 5 BASIC19.44■□□□□ 0.7
CLIP4Q8N3C7 EPHX3-201ENST00000221730 1822 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CLIP4Q8N3C7 RHOBTB3-201ENST00000379982 5537 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CLIP4Q8N3C7 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
CLIP4Q8N3C7 ELOA3B-201ENST00000611323 1641 ntAPPRIS P1 BASIC19.43■□□□□ 0.7
CLIP4Q8N3C7 ELOA3D-201ENST00000620881 1641 ntAPPRIS P1 BASIC19.43■□□□□ 0.7
CLIP4Q8N3C7 TUBA1A-201ENST00000295766 1887 ntAPPRIS P1 TSL 2 BASIC19.43■□□□□ 0.7
CLIP4Q8N3C7 FIP1L1-201ENST00000306932 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
CLIP4Q8N3C7 ALG1-201ENST00000262374 2132 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CLIP4Q8N3C7 FA2H-201ENST00000219368 2424 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CLIP4Q8N3C7 FUT4-201ENST00000358752 6059 ntAPPRIS P1 BASIC19.43■□□□□ 0.7
CLIP4Q8N3C7 RAX-202ENST00000334889 3197 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CLIP4Q8N3C7 DDIT4-201ENST00000307365 1748 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CLIP4Q8N3C7 KCNH6-203ENST00000580652 1703 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
CLIP4Q8N3C7 SLC22A17-202ENST00000354772 2238 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
CLIP4Q8N3C7 TRAPPC5-204ENST00000596148 5498 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CLIP4Q8N3C7 NARF-205ENST00000412079 1760 ntTSL 5 BASIC19.43■□□□□ 0.7
CLIP4Q8N3C7 PCSK1N-201ENST00000218230 1050 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CLIP4Q8N3C7 KRTAP17-1-201ENST00000334202 779 ntAPPRIS P1 BASIC19.43■□□□□ 0.7
CLIP4Q8N3C7 STX10-202ENST00000343587 1128 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
CLIP4Q8N3C7 EBPL-204ENST00000378272 766 ntTSL 3 BASIC19.43■□□□□ 0.7
CLIP4Q8N3C7 AC010203.1-202ENST00000550096 695 ntTSL 3 BASIC19.43■□□□□ 0.7
CLIP4Q8N3C7 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CLIP4Q8N3C7 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC19.43■□□□□ 0.7
CLIP4Q8N3C7 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC19.43■□□□□ 0.7
CLIP4Q8N3C7 FAM3C-201ENST00000359943 2508 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CLIP4Q8N3C7 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CLIP4Q8N3C7 UBALD1-201ENST00000283474 1413 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CLIP4Q8N3C7 TBR1-202ENST00000410035 1454 ntTSL 2 BASIC19.42■□□□□ 0.7
CLIP4Q8N3C7 MAPK8IP1P2-201ENST00000580257 1472 ntBASIC19.42■□□□□ 0.7
CLIP4Q8N3C7 AL049796.1-201ENST00000565336 1766 ntBASIC19.42■□□□□ 0.7
CLIP4Q8N3C7 ZNF668-207ENST00000535577 2396 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
CLIP4Q8N3C7 ZNF707-202ENST00000418203 2661 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
CLIP4Q8N3C7 TTYH3-201ENST00000258796 4840 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CLIP4Q8N3C7 TEAD2-208ENST00000598810 2191 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
CLIP4Q8N3C7 PRDM8-202ENST00000415738 3124 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CLIP4Q8N3C7 PARN-205ENST00000539279 1557 ntTSL 2 BASIC19.42■□□□□ 0.7
CLIP4Q8N3C7 AL035252.2-201ENST00000454676 3168 ntTSL 2 BASIC19.42■□□□□ 0.7
CLIP4Q8N3C7 MFF-208ENST00000409616 1247 ntTSL 5 BASIC19.42■□□□□ 0.7
CLIP4Q8N3C7 AL355102.2-201ENST00000553811 600 ntAPPRIS P1 TSL 2 BASIC19.42■□□□□ 0.7
CLIP4Q8N3C7 ADGRA3-204ENST00000502482 2870 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
CLIP4Q8N3C7 MTX2-201ENST00000249442 1364 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CLIP4Q8N3C7 TMEM17-201ENST00000335390 1797 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CLIP4Q8N3C7 SCARF2-202ENST00000622235 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
CLIP4Q8N3C7 TNIP1-205ENST00000518977 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
CLIP4Q8N3C7 FAM91A1-207ENST00000521166 2706 ntTSL 2 BASIC19.41■□□□□ 0.7
CLIP4Q8N3C7 MAP1LC3A-201ENST00000360668 1574 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CLIP4Q8N3C7 FNDC10-201ENST00000422725 2085 ntAPPRIS P1 BASIC19.41■□□□□ 0.7
CLIP4Q8N3C7 LRRC3B-201ENST00000396641 1696 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CLIP4Q8N3C7 INPP4A-201ENST00000074304 6752 ntTSL 5 BASIC19.41■□□□□ 0.7
CLIP4Q8N3C7 FAM219A-202ENST00000379078 770 ntTSL 3 BASIC19.41■□□□□ 0.7
CLIP4Q8N3C7 PTGDR-202ENST00000553372 1216 ntTSL 3 BASIC19.41■□□□□ 0.7
CLIP4Q8N3C7 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CLIP4Q8N3C7 EIPR1-206ENST00000443925 1771 ntTSL 3 BASIC19.41■□□□□ 0.7
CLIP4Q8N3C7 PAXIP1-AS1-201ENST00000608317 2256 ntBASIC19.41■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 34.4 ms