Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 AC091305.1-201ENST00000479476 895 ntBASIC20.2■□□□□ 0.82
FOXA1P55317 AC010203.1-202ENST00000550096 695 ntTSL 3 BASIC20.2■□□□□ 0.82
FOXA1P55317 PRMT1-221ENST00000610806 1192 ntTSL 3 BASIC20.2■□□□□ 0.82
FOXA1P55317 PCMT1-205ENST00000464889 1984 ntAPPRIS P3 TSL 1 (best) BASIC20.2■□□□□ 0.82
FOXA1P55317 YBX1-201ENST00000321358 1514 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
FOXA1P55317 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
FOXA1P55317 SLC25A22-216ENST00000531214 1790 ntAPPRIS P1 TSL 2 BASIC20.2■□□□□ 0.82
FOXA1P55317 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC20.2■□□□□ 0.82
FOXA1P55317 RHNO1-204ENST00000489288 1870 ntAPPRIS P3 TSL 1 (best) BASIC20.2■□□□□ 0.82
FOXA1P55317 LINC00682-201ENST00000498940 1625 ntTSL 3 BASIC20.2■□□□□ 0.82
FOXA1P55317 MYO1D-213ENST00000583621 1916 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
FOXA1P55317 DNAAF3-207ENST00000527223 2228 ntAPPRIS ALT2 TSL 2 BASIC20.19■□□□□ 0.82
FOXA1P55317 SHB-201ENST00000377707 2783 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
FOXA1P55317 WNT10A-201ENST00000258411 2547 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
FOXA1P55317 PCSK6-217ENST00000618548 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
FOXA1P55317 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC20.19■□□□□ 0.82
FOXA1P55317 FAM219A-202ENST00000379078 770 ntTSL 3 BASIC20.19■□□□□ 0.82
FOXA1P55317 FAM66D-201ENST00000434078 918 ntTSL 5 BASIC20.19■□□□□ 0.82
FOXA1P55317 FDXR-201ENST00000293195 1875 ntAPPRIS ALT1 TSL 1 (best) BASIC20.19■□□□□ 0.82
FOXA1P55317 GABARAPL3-202ENST00000624044 1851 ntBASIC20.19■□□□□ 0.82
FOXA1P55317 CCDC107-205ENST00000421582 1324 ntAPPRIS ALT2 TSL 2 BASIC20.19■□□□□ 0.82
FOXA1P55317 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
FOXA1P55317 MAG-203ENST00000537831 2341 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
FOXA1P55317 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC20.18■□□□□ 0.82
FOXA1P55317 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC20.18■□□□□ 0.82
FOXA1P55317 PRKCD-202ENST00000394729 2810 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
FOXA1P55317 DUSP28-201ENST00000343217 1555 ntAPPRIS P1 TSL 2 BASIC20.18■□□□□ 0.82
FOXA1P55317 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
FOXA1P55317 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC20.18■□□□□ 0.82
FOXA1P55317 HBM-201ENST00000356815 506 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
FOXA1P55317 POLR2H-204ENST00000438240 994 ntTSL 3 BASIC20.18■□□□□ 0.82
FOXA1P55317 AC012414.1-201ENST00000556676 535 ntBASIC20.18■□□□□ 0.82
FOXA1P55317 GPR108-201ENST00000264080 2057 ntAPPRIS P2 TSL 1 (best) BASIC20.18■□□□□ 0.82
FOXA1P55317 TAF6L-201ENST00000294168 2116 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
FOXA1P55317 SPOCK3-217ENST00000511269 1768 ntAPPRIS P3 TSL 2 BASIC20.18■□□□□ 0.82
FOXA1P55317 AC027702.1-201ENST00000563810 1770 ntBASIC20.18■□□□□ 0.82
FOXA1P55317 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC20.18■□□□□ 0.82
FOXA1P55317 PKIB-206ENST00000392490 1811 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
FOXA1P55317 LINC00969-219ENST00000453324 1439 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
FOXA1P55317 HLA-G-204ENST00000376828 1490 ntAPPRIS ALT2 BASIC20.18■□□□□ 0.82
FOXA1P55317 SYT7-201ENST00000263846 4854 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
FOXA1P55317 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
FOXA1P55317 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
FOXA1P55317 DUSP15-201ENST00000278979 1732 ntTSL 2 BASIC20.17■□□□□ 0.82
FOXA1P55317 AL391422.3-201ENST00000603791 2761 ntBASIC20.17■□□□□ 0.82
FOXA1P55317 CALY-201ENST00000252939 2271 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
FOXA1P55317 NAA10-208ENST00000464845 1772 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
FOXA1P55317 EIF4EBP1-201ENST00000338825 1020 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
FOXA1P55317 EBPL-204ENST00000378272 766 ntTSL 3 BASIC20.17■□□□□ 0.82
FOXA1P55317 PRDX4-202ENST00000379341 1005 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
FOXA1P55317 NALT1-201ENST00000429224 738 ntTSL 5 BASIC20.17■□□□□ 0.82
FOXA1P55317 SUDS3P1-201ENST00000505831 966 ntBASIC20.17■□□□□ 0.82
FOXA1P55317 TPT1-AS1-211ENST00000520622 604 ntTSL 4 BASIC20.17■□□□□ 0.82
FOXA1P55317 TMEM179B-205ENST00000533861 797 ntTSL 5 BASIC20.17■□□□□ 0.82
FOXA1P55317 EEF1DP3-203ENST00000566025 782 ntBASIC20.17■□□□□ 0.82
FOXA1P55317 SDSL-201ENST00000345635 1397 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
FOXA1P55317 AP004608.1-201ENST00000531319 1402 ntTSL 2 BASIC20.17■□□□□ 0.82
FOXA1P55317 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
FOXA1P55317 ZFP69B-202ENST00000411995 2109 ntAPPRIS P1 TSL 5 BASIC20.17■□□□□ 0.82
FOXA1P55317 RASL12-202ENST00000421977 1523 ntTSL 2 BASIC20.17■□□□□ 0.82
FOXA1P55317 CA7-201ENST00000338437 1555 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
FOXA1P55317 AC061975.6-201ENST00000579045 1553 ntBASIC20.17■□□□□ 0.82
FOXA1P55317 BCAT2-207ENST00000597011 1579 ntTSL 5 BASIC20.17■□□□□ 0.82
FOXA1P55317 YAP1-210ENST00000615667 5398 ntAPPRIS ALT2 TSL 5 BASIC20.17■□□□□ 0.82
FOXA1P55317 CYP27A1-201ENST00000258415 2286 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
FOXA1P55317 LYSMD2-201ENST00000267838 1759 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
FOXA1P55317 TTYH1-202ENST00000376530 1885 ntAPPRIS P3 TSL 1 (best) BASIC20.16■□□□□ 0.82
FOXA1P55317 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC20.16■□□□□ 0.82
FOXA1P55317 PELI3-202ENST00000349459 2783 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
FOXA1P55317 TPCN2-205ENST00000542467 2000 ntTSL 2 BASIC20.16■□□□□ 0.82
FOXA1P55317 DBNDD1-201ENST00000002501 2079 ntAPPRIS P1 TSL 2 BASIC20.16■□□□□ 0.82
FOXA1P55317 C1QL1-201ENST00000253407 1295 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
FOXA1P55317 SH3GL1-206ENST00000598564 2194 ntTSL 2 BASIC20.16■□□□□ 0.82
FOXA1P55317 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
FOXA1P55317 RARA-201ENST00000254066 2414 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
FOXA1P55317 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
FOXA1P55317 GRINA-201ENST00000313269 1968 ntAPPRIS P1 TSL 5 BASIC20.15■□□□□ 0.82
FOXA1P55317 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
FOXA1P55317 AL158151.1-201ENST00000372490 2047 ntTSL 2 BASIC20.15■□□□□ 0.82
FOXA1P55317 SDHAF3-202ENST00000432641 2060 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
FOXA1P55317 HDGFL2-208ENST00000616600 2281 ntAPPRIS P3 TSL 1 (best) BASIC20.15■□□□□ 0.82
FOXA1P55317 GLTPD2-201ENST00000331264 1023 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
FOXA1P55317 NUDT14-202ENST00000392568 845 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
FOXA1P55317 MED14OS-201ENST00000456333 900 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
FOXA1P55317 CALM1-203ENST00000544280 1064 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
FOXA1P55317 TPRG1LP1-201ENST00000598702 760 ntBASIC20.15■□□□□ 0.82
FOXA1P55317 MPST-204ENST00000404393 1329 ntTSL 5 BASIC20.15■□□□□ 0.82
FOXA1P55317 PTOV1-212ENST00000599732 1577 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
FOXA1P55317 AC007225.1-201ENST00000566331 1836 ntBASIC20.15■□□□□ 0.82
FOXA1P55317 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC20.15■□□□□ 0.82
FOXA1P55317 MLST8-215ENST00000564088 1861 ntAPPRIS P3 TSL 2 BASIC20.15■□□□□ 0.82
FOXA1P55317 TERF2IP-201ENST00000300086 2118 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
FOXA1P55317 BLCAP-208ENST00000414542 2205 ntAPPRIS P1 TSL 3 BASIC20.15■□□□□ 0.82
FOXA1P55317 RAB5A-201ENST00000273047 2536 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
FOXA1P55317 PPP1CC-201ENST00000335007 2559 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
FOXA1P55317 PLCD1-201ENST00000334661 2769 ntAPPRIS P3 TSL 1 (best) BASIC20.14■□□□□ 0.82
FOXA1P55317 UBC-201ENST00000339647 2688 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.82
FOXA1P55317 EPS8L1-201ENST00000201647 2536 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.82
FOXA1P55317 SLC46A3-202ENST00000380814 2121 ntAPPRIS ALT1 TSL 1 (best) BASIC20.14■□□□□ 0.81
FOXA1P55317 TMEM204-201ENST00000253934 1686 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 34.3 ms