Protein–RNA interactions for Protein: P18848

ATF4, Cyclic AMP-dependent transcription factor ATF-4, humanhuman

Predicted RBP Predictions only

Length 351 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATF4P18848 BIN1-209ENST00000393040 2293 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
ATF4P18848 BRD9-202ENST00000467963 2156 ntAPPRIS P1 TSL 2 BASIC17.32■□□□□ 0.36
ATF4P18848 AC138356.1-201ENST00000330539 2086 ntTSL 2 BASIC17.32■□□□□ 0.36
ATF4P18848 AC145124.1-201ENST00000528514 1361 ntTSL 2 BASIC17.32■□□□□ 0.36
ATF4P18848 UHRF1-203ENST00000615884 2651 ntAPPRIS P1 TSL 2 BASIC17.32■□□□□ 0.36
ATF4P18848 TRIM9-201ENST00000298355 5284 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
ATF4P18848 SNRK-203ENST00000437827 1995 ntTSL 2 BASIC17.32■□□□□ 0.36
ATF4P18848 NIPAL2-201ENST00000341166 4581 ntTSL 2 BASIC17.32■□□□□ 0.36
ATF4P18848 FARP1-242ENST00000627049 5103 ntTSL 5 BASIC17.32■□□□□ 0.36
ATF4P18848 C9orf47-202ENST00000375850 859 ntAPPRIS ALT2 TSL 3 BASIC17.32■□□□□ 0.36
ATF4P18848 AQP1-202ENST00000409611 1140 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
ATF4P18848 MRGPRF-AS1-203ENST00000569432 542 ntTSL 4 BASIC17.32■□□□□ 0.36
ATF4P18848 MMP28-203ENST00000612672 1092 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
ATF4P18848 ATPIF1-202ENST00000465645 1855 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
ATF4P18848 CDKN1C-204ENST00000440480 1811 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
ATF4P18848 AHRR-204ENST00000506456 2350 ntTSL 2 BASIC17.32■□□□□ 0.36
ATF4P18848 USP32-201ENST00000300896 5171 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
ATF4P18848 FAM217A-201ENST00000274673 2265 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
ATF4P18848 IKBKG-206ENST00000594239 2299 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
ATF4P18848 FBLN5-202ENST00000342058 2123 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
ATF4P18848 ANKHD1-205ENST00000394723 2135 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
ATF4P18848 RCAN3-205ENST00000436717 2574 ntTSL 3 BASIC17.32■□□□□ 0.36
ATF4P18848 HEG1-201ENST00000311127 9156 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
ATF4P18848 AC131274.2-201ENST00000580697 1507 ntBASIC17.31■□□□□ 0.36
ATF4P18848 FAM129C-203ENST00000449408 2004 ntAPPRIS ALT2 TSL 2 BASIC17.31■□□□□ 0.36
ATF4P18848 FEM1AP1-201ENST00000431297 1995 ntBASIC17.31■□□□□ 0.36
ATF4P18848 ST3GAL4-217ENST00000534083 1919 ntAPPRIS ALT1 TSL 5 BASIC17.31■□□□□ 0.36
ATF4P18848 TBC1D22A-202ENST00000355704 1886 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
ATF4P18848 KCNS3-201ENST00000304101 2333 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
ATF4P18848 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC17.31■□□□□ 0.36
ATF4P18848 AC020916.1-201ENST00000587762 1774 ntBASIC17.31■□□□□ 0.36
ATF4P18848 EGFL8-219ENST00000333845 1310 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
ATF4P18848 UNKL-204ENST00000389221 5116 ntAPPRIS ALT2 TSL 5 BASIC17.31■□□□□ 0.36
ATF4P18848 TMEM170A-202ENST00000561878 1072 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
ATF4P18848 AC009163.4-201ENST00000567194 530 ntAPPRIS P1 TSL 2 BASIC17.31■□□□□ 0.36
ATF4P18848 HTRA4-201ENST00000302495 2095 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
ATF4P18848 PCCA-203ENST00000376286 2481 ntTSL 2 BASIC17.31■□□□□ 0.36
ATF4P18848 JADE3-204ENST00000614628 4934 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
ATF4P18848 BBS5-202ENST00000392663 3107 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
ATF4P18848 HOXB3-202ENST00000460160 1525 ntTSL 5 BASIC17.31■□□□□ 0.36
ATF4P18848 PNPO-201ENST00000225573 2256 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
ATF4P18848 ARHGEF19-201ENST00000270747 3029 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
ATF4P18848 UBE2Q2-208ENST00000569423 2969 ntTSL 2 BASIC17.31■□□□□ 0.36
ATF4P18848 HES6-201ENST00000272937 1454 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
ATF4P18848 KRT8P33-201ENST00000508125 1423 ntBASIC17.3■□□□□ 0.36
ATF4P18848 ACAA1-219ENST00000625927 1760 ntTSL 5 BASIC17.3■□□□□ 0.36
ATF4P18848 ISLR2-208ENST00000565159 2824 ntAPPRIS P1 TSL 3 BASIC17.3■□□□□ 0.36
ATF4P18848 UBN1-201ENST00000262376 6252 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
ATF4P18848 KCNT1-202ENST00000371757 4717 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
ATF4P18848 COL8A2-203ENST00000481785 2036 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
ATF4P18848 AC055876.1-201ENST00000430589 895 ntTSL 2 BASIC17.3■□□□□ 0.36
ATF4P18848 FAM173A-202ENST00000564000 1088 ntAPPRIS ALT2 TSL 2 BASIC17.3■□□□□ 0.36
ATF4P18848 AL031848.2-201ENST00000607670 837 ntBASIC17.3■□□□□ 0.36
ATF4P18848 AGAP2-201ENST00000257897 5388 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
ATF4P18848 ASGR1-208ENST00000574388 1552 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
ATF4P18848 GAS2L1-210ENST00000621062 2483 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
ATF4P18848 EXTL3-201ENST00000220562 6483 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
ATF4P18848 DDHD1-201ENST00000323669 5503 ntTSL 2 BASIC17.3■□□□□ 0.36
ATF4P18848 MADCAM1-206ENST00000617201 1491 ntAPPRIS ALT2 TSL 5 BASIC17.3■□□□□ 0.36
ATF4P18848 MADCAM1-207ENST00000619333 1485 ntAPPRIS ALT2 TSL 5 BASIC17.3■□□□□ 0.36
ATF4P18848 MADCAM1-210ENST00000622462 1461 ntAPPRIS ALT2 TSL 5 BASIC17.3■□□□□ 0.36
ATF4P18848 FKRP-202ENST00000391909 2801 ntAPPRIS P1 TSL 2 BASIC17.29■□□□□ 0.36
ATF4P18848 TDRP-201ENST00000324079 3395 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
ATF4P18848 BCL2-203ENST00000589955 5011 ntBASIC17.29■□□□□ 0.36
ATF4P18848 AL139099.2-201ENST00000555043 2469 ntTSL 2 BASIC17.29■□□□□ 0.36
ATF4P18848 ME2-218ENST00000640965 2476 ntTSL 5 BASIC17.29■□□□□ 0.36
ATF4P18848 AQP11-201ENST00000313578 2152 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
ATF4P18848 ELAC2-202ENST00000395962 2924 ntTSL 2 BASIC17.29■□□□□ 0.36
ATF4P18848 SDCBP-204ENST00000447182 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC17.29■□□□□ 0.36
ATF4P18848 AGTR1-201ENST00000349243 2356 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
ATF4P18848 PRKRIP1-208ENST00000496391 3430 ntAPPRIS P1 TSL 2 BASIC17.29■□□□□ 0.36
ATF4P18848 CNTD2-202ENST00000430325 1817 ntAPPRIS P2 TSL 2 BASIC17.29■□□□□ 0.36
ATF4P18848 NDUFA10-204ENST00000407129 699 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
ATF4P18848 LINC00092-201ENST00000412122 1726 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
ATF4P18848 C3orf58-201ENST00000315691 4346 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
ATF4P18848 PSMD7-201ENST00000219313 1670 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
ATF4P18848 PON2-218ENST00000633531 1653 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
ATF4P18848 CPT2-203ENST00000635862 2319 ntTSL 5 BASIC17.29■□□□□ 0.36
ATF4P18848 TTLL1-201ENST00000266254 1645 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
ATF4P18848 EI24-204ENST00000527235 1625 ntTSL 5 BASIC17.29■□□□□ 0.36
ATF4P18848 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC17.28■□□□□ 0.36
ATF4P18848 AC079630.1-202ENST00000618127 1840 ntBASIC17.28■□□□□ 0.36
ATF4P18848 AK3-202ENST00000381809 2736 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
ATF4P18848 TNFAIP2-201ENST00000333007 4175 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
ATF4P18848 ASXL1-202ENST00000375687 7031 ntAPPRIS P2 TSL 5 BASIC17.28■□□□□ 0.36
ATF4P18848 MED25-211ENST00000617849 1548 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
ATF4P18848 EEPD1-201ENST00000242108 4765 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
ATF4P18848 CST6-201ENST00000312134 759 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
ATF4P18848 IGFBP3-202ENST00000381083 1050 ntAPPRIS ALT1 TSL 5 BASIC17.28■□□□□ 0.36
ATF4P18848 GPRC5B-202ENST00000535671 1215 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
ATF4P18848 AC103724.3-201ENST00000564481 992 ntBASIC17.28■□□□□ 0.36
ATF4P18848 THA1P-201ENST00000590384 1145 ntBASIC17.28■□□□□ 0.36
ATF4P18848 AC064853.4-201ENST00000641394 363 ntAPPRIS P1 BASIC17.28■□□□□ 0.36
ATF4P18848 EPB41L4B-201ENST00000374557 4006 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
ATF4P18848 R3HCC1-202ENST00000411463 1467 ntAPPRIS P5 TSL 5 BASIC17.28■□□□□ 0.36
ATF4P18848 ATPAF1-214ENST00000576409 4158 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
ATF4P18848 CAMK2B-216ENST00000440254 2097 ntAPPRIS P4 TSL 1 (best) BASIC17.28■□□□□ 0.36
ATF4P18848 PTRH1-204ENST00000419060 2692 ntAPPRIS P1 TSL 2 BASIC17.28■□□□□ 0.36
ATF4P18848 SRI-201ENST00000265729 2010 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
ATF4P18848 ADRA1B-201ENST00000306675 2047 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 72.8 ms