Protein–RNA interactions for Protein: P04114

APOB, Apolipoprotein B-100, humanhuman

Known RBP Predictions only

Length 4,563 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOBP04114 PRSS57-201ENST00000329267 1025 ntAPPRIS ALT2 TSL 1 (best) BASIC13.19□□□□□ -0.3
APOBP04114 C20orf196-202ENST00000378979 585 ntTSL 2 BASIC13.19□□□□□ -0.3
APOBP04114 AC012146.1-202ENST00000413077 474 ntTSL 2 BASIC13.19□□□□□ -0.3
APOBP04114 PRSS57-202ENST00000613411 1090 ntAPPRIS P3 TSL 1 (best) BASIC13.19□□□□□ -0.3
APOBP04114 SMARCB1-204ENST00000407422 1643 ntAPPRIS ALT1 TSL 1 (best) BASIC13.19□□□□□ -0.3
APOBP04114 PDLIM2-202ENST00000308354 2236 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
APOBP04114 PDLIM2-203ENST00000339162 2226 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
APOBP04114 ANXA2-201ENST00000332680 1444 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
APOBP04114 AGTRAP-203ENST00000376629 1100 ntAPPRIS ALT2 TSL 1 (best) BASIC13.19□□□□□ -0.3
APOBP04114 TMSB4X-201ENST00000380633 495 ntAPPRIS P1 TSL 3 BASIC13.19□□□□□ -0.3
APOBP04114 TSPAN4-209ENST00000409543 1031 ntAPPRIS P1 TSL 5 BASIC13.19□□□□□ -0.3
APOBP04114 AC099329.3-201ENST00000431549 602 ntAPPRIS P1 TSL 4 BASIC13.19□□□□□ -0.3
APOBP04114 MIR6786-201ENST00000616843 113 ntBASIC13.19□□□□□ -0.3
APOBP04114 CROCCP2-205ENST00000639481 1296 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
APOBP04114 BABAM1-213ENST00000601043 1366 ntAPPRIS P3 TSL 2 BASIC13.19□□□□□ -0.3
APOBP04114 RBMS1-205ENST00000409972 1815 ntTSL 5 BASIC13.19□□□□□ -0.3
APOBP04114 PLBD2-202ENST00000545182 2321 ntTSL 2 BASIC13.19□□□□□ -0.3
APOBP04114 TERF1P1-201ENST00000311003 1181 ntBASIC13.18□□□□□ -0.3
APOBP04114 UNC50-201ENST00000357765 1143 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
APOBP04114 FAM207A-202ENST00000397826 880 ntAPPRIS ALT1 TSL 1 (best) BASIC13.18□□□□□ -0.3
APOBP04114 AC239809.2-201ENST00000415381 517 ntBASIC13.18□□□□□ -0.3
APOBP04114 VMO1-204ENST00000441199 741 ntTSL 2 BASIC13.18□□□□□ -0.3
APOBP04114 ARMC4P1-202ENST00000576034 643 ntTSL 2 BASIC13.18□□□□□ -0.3
APOBP04114 TSTA3-201ENST00000425753 1362 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
APOBP04114 DXO-201ENST00000337523 1628 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
APOBP04114 ISG20-202ENST00000379224 540 ntTSL 3 BASIC13.18□□□□□ -0.3
APOBP04114 AC004889.1-203ENST00000464929 819 ntTSL 5 BASIC13.18□□□□□ -0.3
APOBP04114 OR2A1-AS1-207ENST00000486094 819 ntBASIC13.18□□□□□ -0.3
APOBP04114 AC027682.2-201ENST00000563083 336 ntTSL 5 BASIC13.18□□□□□ -0.3
APOBP04114 EEF1D-256ENST00000618139 2238 ntTSL 5 BASIC13.18□□□□□ -0.3
APOBP04114 TARBP2-201ENST00000266987 1867 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
APOBP04114 PTGER3-203ENST00000354608 1470 ntAPPRIS ALT2 TSL 5 BASIC13.18□□□□□ -0.3
APOBP04114 LRRC75A-AS1-225ENST00000581913 1091 ntTSL 2 BASIC13.18□□□□□ -0.3
APOBP04114 AC093762.2-201ENST00000641700 291 ntAPPRIS P1 BASIC13.18□□□□□ -0.3
APOBP04114 CD6-203ENST00000352009 1809 ntAPPRIS ALT2 TSL 1 (best) BASIC13.18□□□□□ -0.3
APOBP04114 CDK6-202ENST00000424848 1465 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
APOBP04114 AL645608.1-202ENST00000417705 1389 ntTSL 3 BASIC13.18□□□□□ -0.3
APOBP04114 CSF1-205ENST00000420111 1083 ntTSL 5 BASIC13.18□□□□□ -0.3
APOBP04114 PBX1-209ENST00000485769 834 ntTSL 2 BASIC13.18□□□□□ -0.3
APOBP04114 FBXL22-204ENST00000638704 729 ntAPPRIS ALT2 TSL 2 BASIC13.18□□□□□ -0.3
APOBP04114 KRT8P9-201ENST00000558927 1449 ntBASIC13.18□□□□□ -0.3
APOBP04114 AC020928.2-201ENST00000588717 2197 ntBASIC13.18□□□□□ -0.3
APOBP04114 FZD9-201ENST00000344575 2338 ntAPPRIS P1 BASIC13.18□□□□□ -0.3
APOBP04114 CBLC-201ENST00000270279 1579 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
APOBP04114 HOXD9-201ENST00000249499 1870 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
APOBP04114 OXT-201ENST00000217386 513 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
APOBP04114 BCL7B-206ENST00000455335 985 ntTSL 3 BASIC13.17□□□□□ -0.3
APOBP04114 MRPL4-202ENST00000307422 1320 ntAPPRIS P2 TSL 5 BASIC13.17□□□□□ -0.3
APOBP04114 OTUD5-203ENST00000396743 2682 ntAPPRIS ALT1 TSL 1 (best) BASIC13.17□□□□□ -0.3
APOBP04114 GGPS1-206ENST00000488594 1396 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
APOBP04114 TUB-201ENST00000299506 2019 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
APOBP04114 RAP1B-203ENST00000378985 1017 ntTSL 2 BASIC13.17□□□□□ -0.3
APOBP04114 HLA-DPB1-211ENST00000418931 1560 ntAPPRIS P2 BASIC13.17□□□□□ -0.3
APOBP04114 DBNL-214ENST00000456905 1241 ntTSL 2 BASIC13.17□□□□□ -0.3
APOBP04114 MOK-228ENST00000523231 1114 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
APOBP04114 RAP1B-221ENST00000540209 1264 ntTSL 2 BASIC13.17□□□□□ -0.3
APOBP04114 SMIM20-205ENST00000614775 1190 ntTSL 5 BASIC13.17□□□□□ -0.3
APOBP04114 ISOC2-201ENST00000085068 1122 ntTSL 2 BASIC13.17□□□□□ -0.3
APOBP04114 RBM42-204ENST00000589559 1328 ntTSL 5 BASIC13.17□□□□□ -0.3
APOBP04114 MTFP1-201ENST00000266263 1370 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
APOBP04114 CCDC7-201ENST00000277657 1899 ntAPPRIS P2 TSL 1 (best) BASIC13.17□□□□□ -0.3
APOBP04114 CNIH4-203ENST00000366858 702 ntTSL 3 BASIC13.17□□□□□ -0.3
APOBP04114 AC113347.1-201ENST00000413321 391 ntBASIC13.17□□□□□ -0.3
APOBP04114 BCL2L10-202ENST00000561198 825 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
APOBP04114 AC091551.1-201ENST00000590722 1228 ntAPPRIS P1 TSL 2 BASIC13.17□□□□□ -0.3
APOBP04114 TRAPPC6A-201ENST00000006275 805 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
APOBP04114 AC018553.2-201ENST00000637770 1064 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
APOBP04114 TANGO2-202ENST00000398042 2011 ntTSL 2 BASIC13.17□□□□□ -0.3
APOBP04114 ADIPOR1-201ENST00000340990 2177 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
APOBP04114 LINC00682-201ENST00000498940 1625 ntTSL 3 BASIC13.17□□□□□ -0.3
APOBP04114 AC079145.1-201ENST00000416575 541 ntTSL 2 BASIC13.17□□□□□ -0.3
APOBP04114 KRT18P57-201ENST00000443599 1254 ntBASIC13.17□□□□□ -0.3
APOBP04114 OAF-202ENST00000531220 815 ntAPPRIS ALT2 TSL 3 BASIC13.17□□□□□ -0.3
APOBP04114 COX4I1-202ENST00000561569 716 ntAPPRIS P1 TSL 2 BASIC13.17□□□□□ -0.3
APOBP04114 RBM42-202ENST00000586618 771 ntTSL 3 BASIC13.17□□□□□ -0.3
APOBP04114 PDCD5-207ENST00000590247 699 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
APOBP04114 WWTR1-AS1-202ENST00000479752 1700 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
APOBP04114 IFNAR2-204ENST00000382264 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
APOBP04114 RARG-201ENST00000338561 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC13.16□□□□□ -0.3
APOBP04114 LINC00969-221ENST00000457233 1279 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
APOBP04114 PRKY-204ENST00000533551 1019 ntBASIC13.16□□□□□ -0.3
APOBP04114 TMEM44-211ENST00000473092 1508 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
APOBP04114 MVD-201ENST00000301012 1823 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
APOBP04114 CDC123-201ENST00000281141 1542 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
APOBP04114 AC092865.7-201ENST00000641832 219 ntBASIC13.16□□□□□ -0.3
APOBP04114 LMF1-212ENST00000568897 1603 ntTSL 5 BASIC13.16□□□□□ -0.3
APOBP04114 PTPRCAP-201ENST00000326294 1292 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
APOBP04114 PAQR6-205ENST00000368270 1765 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
APOBP04114 HOXC9-203ENST00000508190 1505 ntAPPRIS P1 TSL 3 BASIC13.16□□□□□ -0.3
APOBP04114 IFI6-203ENST00000362020 828 ntAPPRIS ALT2 TSL 1 (best) BASIC13.15□□□□□ -0.3
APOBP04114 HOXB2-201ENST00000330070 1562 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
APOBP04114 AC013269.1-201ENST00000409259 1653 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
APOBP04114 TISP43-206ENST00000623376 1653 ntAPPRIS ALT2 TSL 1 (best) BASIC13.15□□□□□ -0.3
APOBP04114 FAU-207ENST00000529639 847 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
APOBP04114 AC004706.3-201ENST00000634558 1009 ntTSL 5 BASIC13.15□□□□□ -0.3
APOBP04114 CDC16-206ENST00000375310 2156 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
APOBP04114 ITGA4-202ENST00000339307 1403 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
APOBP04114 TBC1D7-201ENST00000343141 1027 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
APOBP04114 AC226101.2-201ENST00000458252 747 ntTSL 2 BASIC13.15□□□□□ -0.3
APOBP04114 FBXO28-202ENST00000424254 1334 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
Retrieved 100 of 98,524 protein–RNA pairs in 26.9 ms