Protein–RNA interactions for Protein: O95639

CPSF4, Cleavage and polyadenylation specificity factor subunit 4, humanhuman

Known RBP Predictions only

Length 269 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4O95639 ELOA3D-201ENST00000620881 1641 ntAPPRIS P1 BASIC19.81■□□□□ 0.76
CPSF4O95639 MAG-201ENST00000361922 2426 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
CPSF4O95639 PACRGL-227ENST00000513459 1773 ntTSL 5 BASIC19.81■□□□□ 0.76
CPSF4O95639 TMEM204-202ENST00000566264 1938 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
CPSF4O95639 CDKN2B-202ENST00000380142 859 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
CPSF4O95639 HSPE1-203ENST00000409729 478 ntTSL 2 BASIC19.81■□□□□ 0.76
CPSF4O95639 AC008443.4-201ENST00000503314 456 ntTSL 4 BASIC19.81■□□□□ 0.76
CPSF4O95639 AP001330.3-201ENST00000520123 633 ntBASIC19.81■□□□□ 0.76
CPSF4O95639 DGKZ-214ENST00000527911 3337 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
CPSF4O95639 UBE2I-205ENST00000402301 1708 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
CPSF4O95639 RHOBTB2-201ENST00000251822 5451 ntAPPRIS P3 TSL 1 (best) BASIC19.81■□□□□ 0.76
CPSF4O95639 ME3-212ENST00000543262 2311 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
CPSF4O95639 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
CPSF4O95639 BX005040.4-201ENST00000637145 1518 ntBASIC19.81■□□□□ 0.76
CPSF4O95639 ARSA-205ENST00000453344 1650 ntTSL 2 BASIC19.81■□□□□ 0.76
CPSF4O95639 MRAS-202ENST00000423968 1803 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
CPSF4O95639 ZSWIM8-220ENST00000604524 5465 ntTSL 5 BASIC19.81■□□□□ 0.76
CPSF4O95639 SLC9A3R1-201ENST00000262613 1969 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
CPSF4O95639 GPRIN2-202ENST00000374317 1966 ntAPPRIS P1 TSL 3 BASIC19.81■□□□□ 0.76
CPSF4O95639 COCH-205ENST00000475087 1997 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
CPSF4O95639 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
CPSF4O95639 LINC01521-201ENST00000504184 1943 ntBASIC19.8■□□□□ 0.76
CPSF4O95639 C14orf79-207ENST00000550614 1912 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
CPSF4O95639 ACOT2-201ENST00000238651 1774 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
CPSF4O95639 PRR7-201ENST00000323249 1480 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
CPSF4O95639 ADGRB1-201ENST00000323289 5527 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
CPSF4O95639 ASCL2-201ENST00000331289 1852 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
CPSF4O95639 ZGPAT-204ENST00000369967 1890 ntAPPRIS P1 TSL 5 BASIC19.8■□□□□ 0.76
CPSF4O95639 ADGRA3-204ENST00000502482 2870 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
CPSF4O95639 PML-217ENST00000567543 1404 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
CPSF4O95639 RTP5-201ENST00000343216 2296 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
CPSF4O95639 URAD-201ENST00000332715 931 ntAPPRIS P1 TSL 5 BASIC19.8■□□□□ 0.76
CPSF4O95639 KRTAP17-1-201ENST00000334202 779 ntAPPRIS P1 BASIC19.8■□□□□ 0.76
CPSF4O95639 NINJ1-201ENST00000375446 1281 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
CPSF4O95639 HES6-202ENST00000409002 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
CPSF4O95639 AP006621.1-201ENST00000532946 536 ntTSL 5 BASIC19.8■□□□□ 0.76
CPSF4O95639 SCOC-207ENST00000506597 1838 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
CPSF4O95639 TMEM178A-201ENST00000281961 1662 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
CPSF4O95639 FAM69B-202ENST00000371692 1668 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
CPSF4O95639 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC19.8■□□□□ 0.76
CPSF4O95639 DMRTB1-201ENST00000371445 1910 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
CPSF4O95639 RCN2-202ENST00000394883 1366 ntTSL 5 BASIC19.8■□□□□ 0.76
CPSF4O95639 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC19.8■□□□□ 0.76
CPSF4O95639 PHOSPHO1-202ENST00000413580 2173 ntTSL 2 BASIC19.8■□□□□ 0.76
CPSF4O95639 CLDN23-201ENST00000519106 2169 ntAPPRIS P1 BASIC19.8■□□□□ 0.76
CPSF4O95639 VPS13B-204ENST00000441350 1626 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
CPSF4O95639 DNAJC7-203ENST00000457167 2022 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
CPSF4O95639 TRAF4-205ENST00000444415 1456 ntTSL 5 BASIC19.79■□□□□ 0.76
CPSF4O95639 ITGB1BP1-202ENST00000355346 1963 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
CPSF4O95639 PLK5-205ENST00000642079 1969 ntBASIC19.79■□□□□ 0.76
CPSF4O95639 NR1H2-204ENST00000593926 1828 ntAPPRIS P2 TSL 5 BASIC19.79■□□□□ 0.76
CPSF4O95639 SMIM10L2B-201ENST00000433425 2737 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
CPSF4O95639 ZNF513-202ENST00000407879 2077 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
CPSF4O95639 PCSK1N-201ENST00000218230 1050 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
CPSF4O95639 EDA-201ENST00000338901 1233 ntBASIC19.79■□□□□ 0.76
CPSF4O95639 YTHDF1-201ENST00000370334 747 ntTSL 3 BASIC19.79■□□□□ 0.76
CPSF4O95639 FXN-202ENST00000396364 980 ntTSL 5 BASIC19.79■□□□□ 0.76
CPSF4O95639 MFF-208ENST00000409616 1247 ntTSL 5 BASIC19.79■□□□□ 0.76
CPSF4O95639 CDKN3-207ENST00000543789 610 ntTSL 5 BASIC19.79■□□□□ 0.76
CPSF4O95639 AF213884.3-201ENST00000563833 479 ntBASIC19.79■□□□□ 0.76
CPSF4O95639 AL355001.2-201ENST00000620617 1191 ntBASIC19.79■□□□□ 0.76
CPSF4O95639 FAM3C-201ENST00000359943 2508 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
CPSF4O95639 LGI2-201ENST00000382114 6428 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
CPSF4O95639 DLGAP4-201ENST00000339266 5016 ntAPPRIS ALT2 TSL 5 BASIC19.79■□□□□ 0.76
CPSF4O95639 MOK-226ENST00000522874 1890 ntAPPRIS ALT2 TSL 5 BASIC19.79■□□□□ 0.76
CPSF4O95639 HSD11B1L-201ENST00000301382 1457 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
CPSF4O95639 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC19.79■□□□□ 0.76
CPSF4O95639 RAB1A-202ENST00000409751 1333 ntTSL 5 BASIC19.78■□□□□ 0.76
CPSF4O95639 PMS1-222ENST00000639501 2506 ntTSL 5 BASIC19.78■□□□□ 0.76
CPSF4O95639 GNB1-209ENST00000610897 3145 ntAPPRIS P1 TSL 5 BASIC19.78■□□□□ 0.76
CPSF4O95639 KLHL29-203ENST00000486442 5287 ntAPPRIS P1 TSL 5 BASIC19.78■□□□□ 0.76
CPSF4O95639 S1PR5-204ENST00000617721 1698 ntTSL 5 BASIC19.78■□□□□ 0.76
CPSF4O95639 AC006128.1-201ENST00000624704 1661 ntBASIC19.78■□□□□ 0.76
CPSF4O95639 RARG-204ENST00000543726 1779 ntTSL 2 BASIC19.78■□□□□ 0.76
CPSF4O95639 KCNQ5-202ENST00000355194 6566 ntAPPRIS ALT1 TSL 5 BASIC19.78■□□□□ 0.76
CPSF4O95639 KCNQ5-206ENST00000402622 6596 ntAPPRIS ALT2 TSL 5 BASIC19.78■□□□□ 0.76
CPSF4O95639 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
CPSF4O95639 FEM1AP1-201ENST00000431297 1995 ntBASIC19.78■□□□□ 0.76
CPSF4O95639 HBM-201ENST00000356815 506 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
CPSF4O95639 HES3-201ENST00000377898 697 ntAPPRIS P1 TSL 2 BASIC19.78■□□□□ 0.76
CPSF4O95639 FAM219A-202ENST00000379078 770 ntTSL 3 BASIC19.78■□□□□ 0.76
CPSF4O95639 MIR572-201ENST00000384983 95 ntBASIC19.78■□□□□ 0.76
CPSF4O95639 PCGF3-202ENST00000400151 1175 ntTSL 2 BASIC19.78■□□□□ 0.76
CPSF4O95639 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC19.78■□□□□ 0.76
CPSF4O95639 AC110285.6-201ENST00000617652 491 ntBASIC19.78■□□□□ 0.76
CPSF4O95639 HMCES-203ENST00000417226 1490 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
CPSF4O95639 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC19.78■□□□□ 0.76
CPSF4O95639 ADAMTS2-202ENST00000274609 2044 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
CPSF4O95639 PANO1-201ENST00000620120 1680 ntAPPRIS P1 BASIC19.78■□□□□ 0.76
CPSF4O95639 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
CPSF4O95639 BRPF3-202ENST00000357641 6052 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
CPSF4O95639 MMP17-201ENST00000360564 2411 ntAPPRIS P2 TSL 1 (best) BASIC19.77■□□□□ 0.76
CPSF4O95639 ECHDC2-221ENST00000536120 1446 ntTSL 3 BASIC19.77■□□□□ 0.76
CPSF4O95639 ZNF800-208ENST00000619291 2099 ntTSL 5 BASIC19.77■□□□□ 0.76
CPSF4O95639 HAND1-201ENST00000231121 1738 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
CPSF4O95639 CBR3-201ENST00000290354 1169 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
CPSF4O95639 PTGDR-202ENST00000553372 1216 ntTSL 3 BASIC19.77■□□□□ 0.76
CPSF4O95639 NEDD4L-237ENST00000617539 728 ntTSL 2 BASIC19.77■□□□□ 0.76
CPSF4O95639 RASA4CP-201ENST00000424092 1398 ntBASIC19.77■□□□□ 0.76
CPSF4O95639 UBR2-203ENST00000372903 2423 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 28.6 ms