Protein–RNA interactions for Protein: O60232

SSSCA1, Sjoegren syndrome/scleroderma autoantigen 1, humanhuman

Predictions only

Length 199 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSSCA1O60232 SRSF4-201ENST00000373795 2387 ntAPPRIS P2 TSL 1 (best) BASIC16.97■□□□□ 0.31
SSSCA1O60232 ERF-202ENST00000440177 2032 ntTSL 2 BASIC16.97■□□□□ 0.31
SSSCA1O60232 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
SSSCA1O60232 RCN3-201ENST00000270645 1859 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
SSSCA1O60232 FGF7P6-201ENST00000377614 1890 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
SSSCA1O60232 PAX1-202ENST00000444366 1850 ntAPPRIS ALT2 TSL 2 BASIC16.97■□□□□ 0.31
SSSCA1O60232 BX664615.2-202ENST00000639056 1888 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
SSSCA1O60232 CADPS2-208ENST00000615869 6066 ntAPPRIS ALT1 TSL 5 BASIC16.97■□□□□ 0.31
SSSCA1O60232 GFER-201ENST00000248114 2345 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
SSSCA1O60232 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
SSSCA1O60232 PTPRE-201ENST00000254667 5331 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
SSSCA1O60232 EYA2-210ENST00000611592 2612 ntTSL 5 BASIC16.97■□□□□ 0.31
SSSCA1O60232 CELF2-213ENST00000633077 1733 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
SSSCA1O60232 ABLIM2-204ENST00000407564 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
SSSCA1O60232 ZSWIM5-201ENST00000359600 5819 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
SSSCA1O60232 TMEM238-201ENST00000444469 1000 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
SSSCA1O60232 AC010141.3-201ENST00000456659 717 ntBASIC16.97■□□□□ 0.31
SSSCA1O60232 AC136475.3-202ENST00000534742 812 ntTSL 2 BASIC16.97■□□□□ 0.31
SSSCA1O60232 AC010997.5-201ENST00000609182 354 ntBASIC16.97■□□□□ 0.31
SSSCA1O60232 GADD45A-205ENST00000617962 1142 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
SSSCA1O60232 AC012354.3-201ENST00000623734 483 ntBASIC16.97■□□□□ 0.31
SSSCA1O60232 ZNF771-201ENST00000319296 2371 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
SSSCA1O60232 SET-201ENST00000322030 2915 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
SSSCA1O60232 C14orf79-207ENST00000550614 1912 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
SSSCA1O60232 ANKRD9-201ENST00000286918 6727 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
SSSCA1O60232 AP004607.7-201ENST00000527152 1677 ntBASIC16.97■□□□□ 0.31
SSSCA1O60232 CDO1-201ENST00000250535 1860 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
SSSCA1O60232 VKORC1L1-202ENST00000434382 1541 ntTSL 2 BASIC16.96■□□□□ 0.31
SSSCA1O60232 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
SSSCA1O60232 AC005540.1-201ENST00000413911 919 ntTSL 3 BASIC16.96■□□□□ 0.31
SSSCA1O60232 AC006455.2-201ENST00000429931 906 ntBASIC16.96■□□□□ 0.31
SSSCA1O60232 RNF146-205ENST00000477776 762 ntTSL 3 BASIC16.96■□□□□ 0.31
SSSCA1O60232 HAUS7-202ENST00000370211 1363 ntAPPRIS P2 TSL 1 (best) BASIC16.96■□□□□ 0.31
SSSCA1O60232 OAS3-205ENST00000548514 1392 ntTSL 2 BASIC16.96■□□□□ 0.31
SSSCA1O60232 BMP1-202ENST00000306385 4229 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
SSSCA1O60232 C12orf76-203ENST00000546651 1755 ntTSL 2 BASIC16.96■□□□□ 0.31
SSSCA1O60232 SMOC2-206ENST00000535039 1875 ntTSL 5 BASIC16.96■□□□□ 0.31
SSSCA1O60232 SHANK3-203ENST00000445220 5175 ntAPPRIS ALT2 TSL 5 BASIC16.96■□□□□ 0.3
SSSCA1O60232 CNEP1R1-203ENST00000458059 2965 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
SSSCA1O60232 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
SSSCA1O60232 SLC43A3-225ENST00000533524 1879 ntAPPRIS ALT2 TSL 2 BASIC16.95■□□□□ 0.3
SSSCA1O60232 MYH7B-201ENST00000262873 6293 ntAPPRIS P2 TSL 1 (best) BASIC16.95■□□□□ 0.3
SSSCA1O60232 PRKCD-202ENST00000394729 2810 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
SSSCA1O60232 ISLR2-204ENST00000453268 2812 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
SSSCA1O60232 LINC01770-201ENST00000417917 634 ntTSL 2 BASIC16.95■□□□□ 0.3
SSSCA1O60232 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
SSSCA1O60232 SRRM3-204ENST00000611745 3612 ntAPPRIS P1 TSL 5 BASIC16.95■□□□□ 0.3
SSSCA1O60232 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
SSSCA1O60232 TRABD2A-201ENST00000335459 1844 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
SSSCA1O60232 PRR20B-201ENST00000377930 1847 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
SSSCA1O60232 PRR20A-201ENST00000377931 1847 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
SSSCA1O60232 PRR20E-201ENST00000434815 1847 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
SSSCA1O60232 PRR20D-201ENST00000452123 1847 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
SSSCA1O60232 PRR20C-201ENST00000544357 1847 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
SSSCA1O60232 PRR20C-202ENST00000614894 1847 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
SSSCA1O60232 BRD4-202ENST00000360016 3240 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
SSSCA1O60232 EGFL7-201ENST00000308874 1747 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
SSSCA1O60232 SERPINF2-201ENST00000324015 2284 ntAPPRIS P1 TSL 5 BASIC16.95■□□□□ 0.3
SSSCA1O60232 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC16.95■□□□□ 0.3
SSSCA1O60232 PQLC2-201ENST00000375153 2153 ntAPPRIS P1 TSL 2 BASIC16.95■□□□□ 0.3
SSSCA1O60232 BRSK1-201ENST00000309383 3079 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
SSSCA1O60232 SMARCC1-201ENST00000254480 6375 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
SSSCA1O60232 AC007128.1-201ENST00000424460 1853 ntTSL 5 BASIC16.95■□□□□ 0.3
SSSCA1O60232 DISC1-204ENST00000366633 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
SSSCA1O60232 DISC1-214ENST00000539444 2658 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
SSSCA1O60232 CHD1L-201ENST00000361293 2484 ntTSL 2 BASIC16.94■□□□□ 0.3
SSSCA1O60232 TUBA4A-202ENST00000392088 2499 ntTSL 2 BASIC16.94■□□□□ 0.3
SSSCA1O60232 KLHL11-201ENST00000319121 2383 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
SSSCA1O60232 HMOX2-218ENST00000619913 1908 ntAPPRIS P1 TSL 5 BASIC16.94■□□□□ 0.3
SSSCA1O60232 CDK13-207ENST00000613626 3099 ntTSL 5 BASIC16.94■□□□□ 0.3
SSSCA1O60232 CD55-205ENST00000367067 1843 ntAPPRIS ALT2 TSL 5 BASIC16.94■□□□□ 0.3
SSSCA1O60232 P4HB-201ENST00000331483 2603 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
SSSCA1O60232 KLF16-201ENST00000250916 2890 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
SSSCA1O60232 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC16.94■□□□□ 0.3
SSSCA1O60232 BAD-203ENST00000394532 1157 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
SSSCA1O60232 MDK-202ENST00000395565 951 ntAPPRIS P2 TSL 2 BASIC16.94■□□□□ 0.3
SSSCA1O60232 PRTG-204ENST00000561292 833 ntTSL 3 BASIC16.94■□□□□ 0.3
SSSCA1O60232 TTC34-201ENST00000401095 8814 ntAPPRIS ALT2 TSL 5 BASIC16.94■□□□□ 0.3
SSSCA1O60232 NKX2-1-202ENST00000498187 2338 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
SSSCA1O60232 PHF12-202ENST00000332830 4759 ntAPPRIS P1 TSL 2 BASIC16.94■□□□□ 0.3
SSSCA1O60232 BCL7A-201ENST00000261822 2581 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
SSSCA1O60232 CLN8-213ENST00000637156 1897 ntAPPRIS P1 TSL 5 BASIC16.94■□□□□ 0.3
SSSCA1O60232 HMBS-201ENST00000278715 1501 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
SSSCA1O60232 PACSIN3-211ENST00000539589 2009 ntAPPRIS P1 TSL 2 BASIC16.94■□□□□ 0.3
SSSCA1O60232 FAM117B-201ENST00000392238 5763 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
SSSCA1O60232 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC16.94■□□□□ 0.3
SSSCA1O60232 AC020907.5-201ENST00000624372 1936 ntBASIC16.94■□□□□ 0.3
SSSCA1O60232 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
SSSCA1O60232 CHRNA10-204ENST00000534359 1474 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
SSSCA1O60232 GGA2-211ENST00000567468 1713 ntTSL 2 BASIC16.93■□□□□ 0.3
SSSCA1O60232 TMEM189-201ENST00000371650 2222 ntAPPRIS ALT1 TSL 1 (best) BASIC16.93■□□□□ 0.3
SSSCA1O60232 AMIGO1-202ENST00000369864 5088 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
SSSCA1O60232 ANKS1A-201ENST00000360359 6347 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
SSSCA1O60232 IQSEC2-218ENST00000640694 5958 ntAPPRIS ALT2 TSL 5 BASIC16.93■□□□□ 0.3
SSSCA1O60232 MBD3-201ENST00000156825 5518 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
SSSCA1O60232 TOR1B-201ENST00000259339 2769 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
SSSCA1O60232 EIPR1-206ENST00000443925 1771 ntTSL 3 BASIC16.93■□□□□ 0.3
SSSCA1O60232 AHCYL1-203ENST00000393614 4313 ntTSL 2 BASIC16.93■□□□□ 0.3
SSSCA1O60232 CRYAA-201ENST00000291554 1139 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
SSSCA1O60232 FDX2-202ENST00000393708 1012 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 29.6 ms