Protein–RNA interactions for Protein: A0A1B0GU29

SMIM28, Small integral membrane protein 28, humanhuman

Predictions only

Length 152 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMIM28A0A1B0GU29 MAP1LC3A-201ENST00000360668 1574 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
SMIM28A0A1B0GU29 SLC25A24P1-201ENST00000411846 1569 ntTSL 5 BASIC22.45■■□□□ 1.18
SMIM28A0A1B0GU29 LINC00605-201ENST00000514902 1558 ntTSL 1 (best) BASIC22.45■■□□□ 1.18
SMIM28A0A1B0GU29 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC22.45■■□□□ 1.18
SMIM28A0A1B0GU29 TMEM9B-201ENST00000309134 1659 ntTSL 1 (best) BASIC22.45■■□□□ 1.18
SMIM28A0A1B0GU29 SNX7-201ENST00000306121 1734 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
SMIM28A0A1B0GU29 PDE9A-212ENST00000398234 1783 ntTSL 1 (best) BASIC22.45■■□□□ 1.18
SMIM28A0A1B0GU29 ZIM2-201ENST00000593711 2083 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
SMIM28A0A1B0GU29 FAM43A-201ENST00000329759 2494 ntAPPRIS P1 BASIC22.45■■□□□ 1.18
SMIM28A0A1B0GU29 TSSK1B-201ENST00000390666 2478 ntAPPRIS P1 BASIC22.45■■□□□ 1.18
SMIM28A0A1B0GU29 GRK3-203ENST00000619906 2873 ntTSL 5 BASIC22.44■■□□□ 1.18
SMIM28A0A1B0GU29 TFG-201ENST00000240851 1978 ntAPPRIS P3 TSL 1 (best) BASIC22.44■■□□□ 1.18
SMIM28A0A1B0GU29 WDR88-201ENST00000355868 1718 ntAPPRIS P2 TSL 2 BASIC22.44■■□□□ 1.18
SMIM28A0A1B0GU29 MMP23B-202ENST00000378675 1309 ntTSL 1 (best) BASIC22.44■■□□□ 1.18
SMIM28A0A1B0GU29 NOXO1-203ENST00000397280 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC22.44■■□□□ 1.18
SMIM28A0A1B0GU29 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC22.44■■□□□ 1.18
SMIM28A0A1B0GU29 DUSP18-205ENST00000404885 1306 ntAPPRIS P1 TSL 1 (best) BASIC22.44■■□□□ 1.18
SMIM28A0A1B0GU29 CDV3P1-201ENST00000471403 739 ntBASIC22.44■■□□□ 1.18
SMIM28A0A1B0GU29 CDKN2A-205ENST00000479692 544 ntTSL 5 BASIC22.44■■□□□ 1.18
SMIM28A0A1B0GU29 CASP6-205ENST00000505486 538 ntTSL 4 BASIC22.44■■□□□ 1.18
SMIM28A0A1B0GU29 TPT1-AS1-210ENST00000520590 873 ntTSL 5 BASIC22.44■■□□□ 1.18
SMIM28A0A1B0GU29 SAC3D1-205ENST00000531072 1362 ntAPPRIS P1 TSL 2 BASIC22.44■■□□□ 1.18
SMIM28A0A1B0GU29 RHOT1-205ENST00000545287 2516 ntAPPRIS P4 TSL 5 BASIC22.44■■□□□ 1.18
SMIM28A0A1B0GU29 AC005410.1-201ENST00000579522 462 ntTSL 3 BASIC22.44■■□□□ 1.18
SMIM28A0A1B0GU29 TNNI3-207ENST00000588882 669 ntTSL 2 BASIC22.44■■□□□ 1.18
SMIM28A0A1B0GU29 FAM21FP-204ENST00000608637 956 ntBASIC22.44■■□□□ 1.18
SMIM28A0A1B0GU29 SHMT1-201ENST00000316694 2464 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
SMIM28A0A1B0GU29 MEF2A-207ENST00000558812 2186 ntTSL 2 BASIC22.43■■□□□ 1.18
SMIM28A0A1B0GU29 AC084757.3-201ENST00000558061 1943 ntTSL 3 BASIC22.43■■□□□ 1.18
SMIM28A0A1B0GU29 TGIF1-207ENST00000407501 1585 ntAPPRIS P1 TSL 3 BASIC22.43■■□□□ 1.18
SMIM28A0A1B0GU29 WIPF1-207ENST00000410117 777 ntTSL 3 BASIC22.43■■□□□ 1.18
SMIM28A0A1B0GU29 BX276092.2-201ENST00000417668 665 ntBASIC22.43■■□□□ 1.18
SMIM28A0A1B0GU29 CT47A12-201ENST00000419982 1165 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
SMIM28A0A1B0GU29 RGMA-211ENST00000557420 989 ntTSL 3 BASIC22.43■■□□□ 1.18
SMIM28A0A1B0GU29 MIR4758-201ENST00000577688 71 ntBASIC22.43■■□□□ 1.18
SMIM28A0A1B0GU29 AC244015.2-201ENST00000616358 1861 ntBASIC22.43■■□□□ 1.18
SMIM28A0A1B0GU29 SLC25A22-216ENST00000531214 1790 ntAPPRIS P1 TSL 2 BASIC22.43■■□□□ 1.18
SMIM28A0A1B0GU29 MDFI-203ENST00000373051 1622 ntAPPRIS P1 TSL 5 BASIC22.42■■□□□ 1.18
SMIM28A0A1B0GU29 CEBPE-201ENST00000206513 1554 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
SMIM28A0A1B0GU29 TPM1-208ENST00000404484 1568 ntTSL 1 (best) BASIC22.42■■□□□ 1.18
SMIM28A0A1B0GU29 SLC25A39-212ENST00000590194 1542 ntAPPRIS P3 TSL 5 BASIC22.42■■□□□ 1.18
SMIM28A0A1B0GU29 KCNA2-206ENST00000638477 1524 ntTSL 5 BASIC22.42■■□□□ 1.18
SMIM28A0A1B0GU29 PHACTR3-202ENST00000359926 2252 ntTSL 2 BASIC22.42■■□□□ 1.18
SMIM28A0A1B0GU29 FBXW4P1-201ENST00000426721 2239 ntBASIC22.42■■□□□ 1.18
SMIM28A0A1B0GU29 NPDC1-202ENST00000371601 1494 ntAPPRIS P2 TSL 1 (best) BASIC22.42■■□□□ 1.18
SMIM28A0A1B0GU29 TBL1X-201ENST00000217964 5871 ntTSL 1 (best) BASIC22.42■■□□□ 1.18
SMIM28A0A1B0GU29 GTPBP6-201ENST00000326153 1907 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
SMIM28A0A1B0GU29 MED10-201ENST00000255764 1141 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
SMIM28A0A1B0GU29 BHLHA15-201ENST00000314018 706 ntAPPRIS P1 BASIC22.42■■□□□ 1.18
SMIM28A0A1B0GU29 UBE2C-203ENST00000352551 665 ntTSL 2 BASIC22.42■■□□□ 1.18
SMIM28A0A1B0GU29 HSD17B10-202ENST00000375298 823 ntTSL 3 BASIC22.42■■□□□ 1.18
SMIM28A0A1B0GU29 WWTR1-AS1-203ENST00000495094 975 ntTSL 1 (best) BASIC22.42■■□□□ 1.18
SMIM28A0A1B0GU29 AC099522.1-201ENST00000505955 881 ntTSL 3 BASIC22.42■■□□□ 1.18
SMIM28A0A1B0GU29 LYRM1-205ENST00000562740 931 ntTSL 1 (best) BASIC22.42■■□□□ 1.18
SMIM28A0A1B0GU29 BEAN1-AS1-201ENST00000564618 533 ntTSL 4 BASIC22.42■■□□□ 1.18
SMIM28A0A1B0GU29 MAGIX-202ENST00000595224 1238 ntAPPRIS P2 TSL 5 BASIC22.42■■□□□ 1.18
SMIM28A0A1B0GU29 BHLHA15-202ENST00000609256 796 ntAPPRIS P1 TSL 3 BASIC22.42■■□□□ 1.18
SMIM28A0A1B0GU29 TRIM28-202ENST00000341753 2709 ntTSL 1 (best) BASIC22.42■■□□□ 1.18
SMIM28A0A1B0GU29 PPP3CC-202ENST00000289963 2135 ntAPPRIS ALT1 TSL 1 (best) BASIC22.42■■□□□ 1.18
SMIM28A0A1B0GU29 AUH-202ENST00000375731 1577 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
SMIM28A0A1B0GU29 PAXBP1-201ENST00000290178 2564 ntTSL 1 (best) BASIC22.42■■□□□ 1.18
SMIM28A0A1B0GU29 TRIM54-202ENST00000380075 1967 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
SMIM28A0A1B0GU29 PTGER3-204ENST00000356595 1943 ntAPPRIS P4 TSL 1 (best) BASIC22.41■■□□□ 1.18
SMIM28A0A1B0GU29 PTGER3-207ENST00000370931 1914 ntAPPRIS ALT2 TSL 1 (best) BASIC22.41■■□□□ 1.18
SMIM28A0A1B0GU29 MTAP-204ENST00000460874 1434 ntTSL 2 BASIC22.41■■□□□ 1.18
SMIM28A0A1B0GU29 LYPD1-202ENST00000397463 1891 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
SMIM28A0A1B0GU29 NUF2-208ENST00000524800 1845 ntTSL 5 BASIC22.41■■□□□ 1.18
SMIM28A0A1B0GU29 FDXR-219ENST00000583917 1762 ntTSL 5 BASIC22.41■■□□□ 1.18
SMIM28A0A1B0GU29 GCC2-AS1-201ENST00000322353 558 ntTSL 2 BASIC22.41■■□□□ 1.18
SMIM28A0A1B0GU29 PPP1CA-202ENST00000358239 1054 ntTSL 2 BASIC22.41■■□□□ 1.18
SMIM28A0A1B0GU29 EMC6-202ENST00000397133 762 ntAPPRIS P1 TSL 2 BASIC22.41■■□□□ 1.18
SMIM28A0A1B0GU29 PTPA-214ENST00000423100 988 ntTSL 2 BASIC22.41■■□□□ 1.18
SMIM28A0A1B0GU29 PPP1R14BP2-201ENST00000426284 444 ntBASIC22.41■■□□□ 1.18
SMIM28A0A1B0GU29 DYM-203ENST00000442713 2147 ntTSL 2 BASIC22.41■■□□□ 1.18
SMIM28A0A1B0GU29 HTT-AS-201ENST00000503893 515 ntTSL 4 BASIC22.41■■□□□ 1.18
SMIM28A0A1B0GU29 TRAPPC5-203ENST00000595985 411 ntTSL 3 BASIC22.41■■□□□ 1.18
SMIM28A0A1B0GU29 ACVRL1-201ENST00000388922 1971 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
SMIM28A0A1B0GU29 RTCA-201ENST00000260563 1534 ntTSL 1 (best) BASIC22.41■■□□□ 1.18
SMIM28A0A1B0GU29 NIPA2-203ENST00000398013 2280 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
SMIM28A0A1B0GU29 ASRGL1-202ENST00000415229 2270 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
SMIM28A0A1B0GU29 AC007128.1-201ENST00000424460 1853 ntTSL 5 BASIC22.41■■□□□ 1.18
SMIM28A0A1B0GU29 CLDN23-201ENST00000519106 2169 ntAPPRIS P1 BASIC22.4■■□□□ 1.18
SMIM28A0A1B0GU29 CNTFR-202ENST00000378980 2052 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
SMIM28A0A1B0GU29 CDKN2C-203ENST00000396148 2086 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
SMIM28A0A1B0GU29 ZGPAT-201ENST00000328969 1945 ntTSL 2 BASIC22.4■■□□□ 1.18
SMIM28A0A1B0GU29 TRAPPC5-201ENST00000317378 790 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
SMIM28A0A1B0GU29 PSMC3IP-208ENST00000590760 664 ntTSL 1 (best) BASIC22.4■■□□□ 1.18
SMIM28A0A1B0GU29 AC092118.2-201ENST00000613495 667 ntBASIC22.4■■□□□ 1.18
SMIM28A0A1B0GU29 STK25-234ENST00000535007 2459 ntTSL 2 BASIC22.4■■□□□ 1.18
SMIM28A0A1B0GU29 PTX4-203ENST00000447419 1516 ntAPPRIS ALT2 TSL 5 BASIC22.4■■□□□ 1.18
SMIM28A0A1B0GU29 RAB28-201ENST00000288723 1810 ntAPPRIS P3 TSL 1 (best) BASIC22.4■■□□□ 1.18
SMIM28A0A1B0GU29 SSTR3-202ENST00000617123 1781 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
SMIM28A0A1B0GU29 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC22.4■■□□□ 1.18
SMIM28A0A1B0GU29 BAG4-202ENST00000432471 1943 ntTSL 1 (best) BASIC22.39■■□□□ 1.18
SMIM28A0A1B0GU29 UBTF-213ENST00000533177 3011 ntTSL 5 BASIC22.39■■□□□ 1.18
SMIM28A0A1B0GU29 C11orf95-202ENST00000433688 5716 ntAPPRIS P1 TSL 5 BASIC22.39■■□□□ 1.18
SMIM28A0A1B0GU29 NKX6-2-201ENST00000368592 2673 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.18
SMIM28A0A1B0GU29 SMUG1-202ENST00000337581 1571 ntAPPRIS P1 TSL 2 BASIC22.39■■□□□ 1.18
SMIM28A0A1B0GU29 DESI2-201ENST00000263831 859 ntTSL 1 (best) BASIC22.39■■□□□ 1.17
SMIM28A0A1B0GU29 SAPCD2P1-201ENST00000395413 1184 ntBASIC22.39■■□□□ 1.17
Retrieved 100 of 98,524 protein–RNA pairs in 32 ms