Protein–RNA interactions for Protein: Q9H239

MMP28, Matrix metalloproteinase-28, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28Q9H239 IRF3-207ENST00000593922 1494 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
MMP28Q9H239 AP001626.1-201ENST00000424890 2854 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
MMP28Q9H239 LINC01116-201ENST00000295549 1407 ntTSL 2 BASIC18.35■□□□□ 0.53
MMP28Q9H239 RPH3A-203ENST00000543106 2581 ntAPPRIS ALT2 TSL 2 BASIC18.35■□□□□ 0.53
MMP28Q9H239 CRYAA-201ENST00000291554 1139 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
MMP28Q9H239 EPDR1-202ENST00000423717 638 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
MMP28Q9H239 AK3-203ENST00000447596 705 ntTSL 2 BASIC18.35■□□□□ 0.53
MMP28Q9H239 AC092343.1-201ENST00000500224 729 ntTSL 3 BASIC18.35■□□□□ 0.53
MMP28Q9H239 DOK7-206ENST00000515886 2263 ntTSL 2 BASIC18.35■□□□□ 0.53
MMP28Q9H239 HDAC4-201ENST00000345617 8976 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
MMP28Q9H239 HDAC4-215ENST00000543185 8990 ntTSL 5 BASIC18.35■□□□□ 0.53
MMP28Q9H239 SPHK1-203ENST00000545180 2238 ntAPPRIS P3 TSL 2 BASIC18.35■□□□□ 0.53
MMP28Q9H239 PACRGL-201ENST00000295290 1937 ntTSL 5 BASIC18.35■□□□□ 0.53
MMP28Q9H239 ADAMTS19-205ENST00000638972 5089 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
MMP28Q9H239 PLPP1-202ENST00000307259 1597 ntAPPRIS ALT1 TSL 1 (best) BASIC18.34■□□□□ 0.53
MMP28Q9H239 SIGLEC15-201ENST00000389474 1573 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
MMP28Q9H239 KCTD18-201ENST00000359878 2940 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
MMP28Q9H239 AC018445.3-201ENST00000624177 1945 ntBASIC18.34■□□□□ 0.53
MMP28Q9H239 DNAJC4-202ENST00000321685 1288 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
MMP28Q9H239 SUMF1-205ENST00000458465 1102 ntTSL 2 BASIC18.34■□□□□ 0.53
MMP28Q9H239 DNAJC4-212ENST00000628077 938 ntTSL 5 BASIC18.34■□□□□ 0.53
MMP28Q9H239 C20orf27-202ENST00000379772 1886 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
MMP28Q9H239 PHLDB2-210ENST00000478922 1861 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
MMP28Q9H239 GPR157-201ENST00000377411 5265 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
MMP28Q9H239 AC098818.2-201ENST00000564925 2320 ntBASIC18.34■□□□□ 0.53
MMP28Q9H239 PLCB2-204ENST00000557821 4517 ntAPPRIS ALT1 TSL 1 (best) BASIC18.34■□□□□ 0.53
MMP28Q9H239 ASPHD2-201ENST00000215906 3357 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
MMP28Q9H239 PQLC2-201ENST00000375153 2153 ntAPPRIS P1 TSL 2 BASIC18.34■□□□□ 0.53
MMP28Q9H239 ADGRB1-201ENST00000323289 5527 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
MMP28Q9H239 GAS6-201ENST00000327773 2490 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
MMP28Q9H239 NOTCH2NL-204ENST00000579793 1954 ntAPPRIS ALT2 TSL 2 BASIC18.33■□□□□ 0.53
MMP28Q9H239 RAP1B-207ENST00000450214 1466 ntTSL 2 BASIC18.33■□□□□ 0.53
MMP28Q9H239 FOXC1-201ENST00000380874 3926 ntAPPRIS P1 BASIC18.33■□□□□ 0.53
MMP28Q9H239 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
MMP28Q9H239 ROCK2-202ENST00000315872 8292 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
MMP28Q9H239 HMOX2-218ENST00000619913 1908 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.53
MMP28Q9H239 AC044802.1-201ENST00000501143 2894 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
MMP28Q9H239 SEPT2-203ENST00000391971 3315 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
MMP28Q9H239 FUT4-201ENST00000358752 6059 ntAPPRIS P1 BASIC18.33■□□□□ 0.53
MMP28Q9H239 GPC1-202ENST00000420138 1835 ntTSL 5 BASIC18.33■□□□□ 0.53
MMP28Q9H239 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC18.33■□□□□ 0.53
MMP28Q9H239 UBTF-203ENST00000393606 2683 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
MMP28Q9H239 HES5-201ENST00000378453 1306 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
MMP28Q9H239 HCN1-202ENST00000634658 4738 ntTSL 3 BASIC18.33■□□□□ 0.52
MMP28Q9H239 ARPC4-208ENST00000498623 942 ntTSL 2 BASIC18.33■□□□□ 0.52
MMP28Q9H239 PRSS21-201ENST00000005995 1101 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
MMP28Q9H239 HSPD1-202ENST00000388968 2455 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
MMP28Q9H239 AGPAT5-201ENST00000285518 3685 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
MMP28Q9H239 ESRRA-202ENST00000405666 2283 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.52
MMP28Q9H239 LEMD2-201ENST00000293760 2958 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
MMP28Q9H239 DBP-201ENST00000222122 2229 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
MMP28Q9H239 AMZ2-219ENST00000612294 1498 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
MMP28Q9H239 HOXB9-201ENST00000311177 2581 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
MMP28Q9H239 MARK2-201ENST00000350490 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
MMP28Q9H239 LMAN2-201ENST00000303127 1800 ntAPPRIS P2 TSL 1 (best) BASIC18.33■□□□□ 0.52
MMP28Q9H239 CBWD1-203ENST00000377400 1792 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
MMP28Q9H239 SLC35C1-202ENST00000442528 1756 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
MMP28Q9H239 ZDHHC14-203ENST00000359775 7380 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
MMP28Q9H239 ADAM9-203ENST00000466936 2053 ntTSL 2 BASIC18.32■□□□□ 0.52
MMP28Q9H239 PRPS1-203ENST00000372428 1748 ntTSL 2 BASIC18.32■□□□□ 0.52
MMP28Q9H239 ADRM1-205ENST00000620230 1361 ntTSL 5 BASIC18.32■□□□□ 0.52
MMP28Q9H239 LMO4-202ENST00000370544 5405 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
MMP28Q9H239 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
MMP28Q9H239 XKR6-203ENST00000416569 3382 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
MMP28Q9H239 S1PR5-201ENST00000333430 2341 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
MMP28Q9H239 PPTC7-201ENST00000354300 4996 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
MMP28Q9H239 HM13-AS1-201ENST00000412178 489 ntTSL 3 BASIC18.32■□□□□ 0.52
MMP28Q9H239 SDHAP1-204ENST00000427415 559 ntTSL 4 BASIC18.32■□□□□ 0.52
MMP28Q9H239 SLC25A39-203ENST00000537904 1274 ntTSL 2 BASIC18.32■□□□□ 0.52
MMP28Q9H239 AL356740.2-201ENST00000601559 647 ntBASIC18.32■□□□□ 0.52
MMP28Q9H239 GPX4-213ENST00000622390 1002 ntTSL 5 BASIC18.32■□□□□ 0.52
MMP28Q9H239 AL117332.1-201ENST00000622628 974 ntBASIC18.32■□□□□ 0.52
MMP28Q9H239 NOP14-202ENST00000398071 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
MMP28Q9H239 VSTM2A-203ENST00000404951 2521 ntTSL 5 BASIC18.32■□□□□ 0.52
MMP28Q9H239 PIAS2-203ENST00000545673 1590 ntTSL 2 BASIC18.32■□□□□ 0.52
MMP28Q9H239 ZGPAT-203ENST00000357119 1896 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
MMP28Q9H239 ADAP1-216ENST00000539900 2178 ntTSL 2 BASIC18.32■□□□□ 0.52
MMP28Q9H239 SMG8-203ENST00000578922 2178 ntBASIC18.32■□□□□ 0.52
MMP28Q9H239 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
MMP28Q9H239 CHD1L-201ENST00000361293 2484 ntTSL 2 BASIC18.32■□□□□ 0.52
MMP28Q9H239 GRM5-202ENST00000305447 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
MMP28Q9H239 OXCT2P1-201ENST00000447263 1535 ntBASIC18.32■□□□□ 0.52
MMP28Q9H239 MFSD14C-208ENST00000637864 1802 ntAPPRIS ALT2 TSL 2 BASIC18.32■□□□□ 0.52
MMP28Q9H239 ZNF324B-202ENST00000545523 2368 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
MMP28Q9H239 SRCIN1-213ENST00000617146 7058 ntAPPRIS P2 TSL 1 (best) BASIC18.32■□□□□ 0.52
MMP28Q9H239 SOX11-201ENST00000322002 8719 ntAPPRIS P1 BASIC18.32■□□□□ 0.52
MMP28Q9H239 RFXAP-201ENST00000255476 2304 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
MMP28Q9H239 TTC12-202ENST00000393020 2541 ntTSL 5 BASIC18.31■□□□□ 0.52
MMP28Q9H239 AC012645.1-201ENST00000515455 1650 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
MMP28Q9H239 RTN4RL2-201ENST00000335099 2203 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
MMP28Q9H239 AQP6-201ENST00000315520 1398 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
MMP28Q9H239 AC026471.1-201ENST00000564629 3026 ntBASIC18.31■□□□□ 0.52
MMP28Q9H239 MYO1D-213ENST00000583621 1916 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
MMP28Q9H239 ARHGEF18-202ENST00000359920 5733 ntAPPRIS ALT2 TSL 2 BASIC18.31■□□□□ 0.52
MMP28Q9H239 LHFPL3-202ENST00000424859 1852 ntAPPRIS P5 TSL 1 (best) BASIC18.31■□□□□ 0.52
MMP28Q9H239 DYM-203ENST00000442713 2147 ntTSL 2 BASIC18.31■□□□□ 0.52
MMP28Q9H239 SP3-208ENST00000640958 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
MMP28Q9H239 AC136475.3-202ENST00000534742 812 ntTSL 2 BASIC18.31■□□□□ 0.52
MMP28Q9H239 CDKN3-207ENST00000543789 610 ntTSL 5 BASIC18.31■□□□□ 0.52
MMP28Q9H239 WRNIP1-202ENST00000380769 3239 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 23.2 ms