Protein–RNA interactions for Protein: Q8NHQ9

DDX55, ATP-dependent RNA helicase DDX55, humanhuman

Known RBP eCLIP

Length 600 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55Q8NHQ9 TMEM129-201ENST00000303277 2678 ntTSL 1 (best) BASIC21.21■□□□□ 0.998e-8■■■□□ 15.5
DDX55Q8NHQ9 TMEM129-202ENST00000382936 2810 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.698e-8■■■□□ 15.5
DDX55Q8NHQ9 TMEM129-203ENST00000460722 1100 ntTSL 1 (best)18.28■□□□□ 0.528e-8■■■□□ 15.5
DDX55Q8NHQ9 RXRA-201ENST00000356384 5770 ntTSL 517.85■□□□□ 0.452e-7■■■□□ 15.5
DDX55Q8NHQ9 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC21.4■■□□□ 1.028e-11■■■□□ 15.5
DDX55Q8NHQ9 PI4KB-203ENST00000368874 3934 ntAPPRIS ALT1 TSL 1 (best) BASIC14.44□□□□□ -0.18e-11■■■□□ 15.5
DDX55Q8NHQ9 PI4KB-204ENST00000368875 3983 ntAPPRIS P3 TSL 5 BASIC13.16□□□□□ -0.38e-11■■■□□ 15.5
DDX55Q8NHQ9 PI4KB-202ENST00000368873 3340 ntTSL 2 BASIC13.06□□□□□ -0.328e-11■■■□□ 15.5
DDX55Q8NHQ9 RTFDC1-204ENST00000449062 852 ntTSL 517.28■□□□□ 0.364e-6■■■□□ 15.5
DDX55Q8NHQ9 RTFDC1-206ENST00000477485 464 ntTSL 38.42□□□□□ -1.064e-6■■■□□ 15.5
DDX55Q8NHQ9 PMM2-201ENST00000268261 2313 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.252e-6■■■□□ 15.5
DDX55Q8NHQ9 PMM2-214ENST00000567697 5409 ntTSL 1 (best)13.45□□□□□ -0.262e-6■■■□□ 15.5
DDX55Q8NHQ9 AC022167.2-201ENST00000565934 2288 ntTSL 3 BASIC12.39□□□□□ -0.432e-6■■■□□ 15.5
DDX55Q8NHQ9 MVD-201ENST00000301012 1823 ntAPPRIS P1 TSL 1 (best) BASIC25.14■■□□□ 1.611e-11■■■□□ 15.5
DDX55Q8NHQ9 PLEKHJ1-201ENST00000326631 1206 ntAPPRIS P1 TSL 1 (best) BASIC31.68■■■□□ 2.662e-6■■■□□ 15.5
DDX55Q8NHQ9 PLEKHJ1-213ENST00000591099 1092 ntTSL 2 BASIC28.76■■■□□ 2.192e-6■■■□□ 15.5
DDX55Q8NHQ9 PLEKHJ1-206ENST00000587962 1311 ntTSL 2 BASIC25.72■■□□□ 1.712e-6■■■□□ 15.5
DDX55Q8NHQ9 PLEKHJ1-205ENST00000587394 937 ntTSL 2 BASIC24.94■■□□□ 1.582e-6■■■□□ 15.5
DDX55Q8NHQ9 PLEKHJ1-212ENST00000589791 1329 ntTSL 222.36■■□□□ 1.172e-6■■■□□ 15.5
DDX55Q8NHQ9 PLEKHJ1-208ENST00000588450 2858 ntTSL 219.68■□□□□ 0.742e-6■■■□□ 15.5
DDX55Q8NHQ9 PLEKHJ1-211ENST00000589097 2251 ntAPPRIS P1 TSL 2 BASIC18.27■□□□□ 0.522e-6■■■□□ 15.5
DDX55Q8NHQ9 RNF215-203ENST00000382363 1992 ntAPPRIS P2 TSL 1 (best) BASIC31.57■■■□□ 2.641e-8■■■□□ 15.5
DDX55Q8NHQ9 RPLP0-227ENST00000552902 869 ntTSL 224.73■■□□□ 1.551e-8■■■□□ 15.5
DDX55Q8NHQ9 RPLP0-222ENST00000551336 406 ntTSL 324.61■■□□□ 1.531e-8■■■□□ 15.5
DDX55Q8NHQ9 RPLP0-201ENST00000228306 1257 ntAPPRIS P1 TSL 1 (best) BASIC24.53■■□□□ 1.521e-8■■■□□ 15.5
DDX55Q8NHQ9 RPLP0-223ENST00000551783 676 ntTSL 224.04■■□□□ 1.441e-8■■■□□ 15.5
DDX55Q8NHQ9 RPLP0-219ENST00000551150 1344 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.161e-8■■■□□ 15.5
DDX55Q8NHQ9 RPLP0-218ENST00000550856 1003 ntTSL 220.88■□□□□ 0.931e-8■■■□□ 15.5
DDX55Q8NHQ9 RNF215-201ENST00000215798 1651 ntAPPRIS ALT2 TSL 520.35■□□□□ 0.851e-8■■■□□ 15.5
DDX55Q8NHQ9 COASY-213ENST00000591753 2225 ntTSL 1 (best)18.68■□□□□ 0.581e-8■■■□□ 15.5
DDX55Q8NHQ9 NR2F1-201ENST00000327111 3732 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.491e-8■■■□□ 15.5
DDX55Q8NHQ9 RPLP0-226ENST00000552461 2591 ntTSL 216.74■□□□□ 0.271e-8■■■□□ 15.5
DDX55Q8NHQ9 SUN2-211ENST00000455125 872 ntTSL 216.58■□□□□ 0.241e-8■■■□□ 15.5
DDX55Q8NHQ9 RNF215-204ENST00000421022 361 ntTSL 216.48■□□□□ 0.231e-8■■■□□ 15.5
DDX55Q8NHQ9 COASY-212ENST00000591583 716 ntTSL 216.06■□□□□ 0.161e-8■■■□□ 15.5
DDX55Q8NHQ9 COASY-202ENST00000421097 2071 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.141e-8■■■□□ 15.5
DDX55Q8NHQ9 RNF215-210ENST00000631046 468 ntTSL 215.85■□□□□ 0.131e-8■■■□□ 15.5
DDX55Q8NHQ9 COASY-211ENST00000590958 1976 ntTSL 1 (best) BASIC15.79■□□□□ 0.121e-8■■■□□ 15.5
DDX55Q8NHQ9 RPLP0-215ENST00000549242 518 ntTSL 214.42□□□□□ -0.11e-8■■■□□ 15.5
DDX55Q8NHQ9 RPLP0-205ENST00000546989 993 ntTSL 5 BASIC14.42□□□□□ -0.11e-8■■■□□ 15.5
DDX55Q8NHQ9 RNF215-209ENST00000630264 534 ntTSL 214.41□□□□□ -0.11e-8■■■□□ 15.5
DDX55Q8NHQ9 COASY-201ENST00000393818 2458 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.11e-8■■■□□ 15.5
DDX55Q8NHQ9 RPLP0-214ENST00000549098 1106 ntTSL 213.43□□□□□ -0.261e-8■■■□□ 15.5
DDX55Q8NHQ9 RPLP0-203ENST00000392514 1218 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.281e-8■■■□□ 15.5
DDX55Q8NHQ9 RPLP0-202ENST00000313104 912 ntTSL 1 (best) BASIC12.92□□□□□ -0.341e-8■■■□□ 15.5
DDX55Q8NHQ9 RNF215-202ENST00000332468 8141 ntTSL 512.86□□□□□ -0.351e-8■■■□□ 15.5
DDX55Q8NHQ9 RPLP0-212ENST00000548551 543 ntTSL 212.57□□□□□ -0.41e-8■■■□□ 15.5
DDX55Q8NHQ9 RPLP0-221ENST00000551258 966 ntTSL 512.43□□□□□ -0.421e-8■■■□□ 15.5
DDX55Q8NHQ9 RPLP0-208ENST00000547191 680 ntTSL 512.09□□□□□ -0.471e-8■■■□□ 15.5
DDX55Q8NHQ9 RPLP0-211ENST00000548495 651 ntTSL 311.42□□□□□ -0.581e-8■■■□□ 15.5
DDX55Q8NHQ9 STARD7-201ENST00000337288 3368 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.37e-9■■■□□ 15.5
DDX55Q8NHQ9 STARD7-204ENST00000479456 2949 ntTSL 26.85□□□□□ -1.317e-9■■■□□ 15.5
DDX55Q8NHQ9 EGFL7-201ENST00000308874 1747 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.281e-7■■■□□ 15.5
DDX55Q8NHQ9 EGFL7-204ENST00000406555 1529 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.051e-7■■■□□ 15.5
DDX55Q8NHQ9 EGFL7-203ENST00000371699 2125 ntAPPRIS P1 TSL 2 BASIC20.12■□□□□ 0.811e-7■■■□□ 15.5
DDX55Q8NHQ9 TRAPPC6A-205ENST00000592647 514 ntTSL 2 BASIC25.42■■□□□ 1.666e-8■■■□□ 15.5
DDX55Q8NHQ9 TRAPPC6A-201ENST00000006275 805 ntTSL 1 (best) BASIC23.69■■□□□ 1.386e-8■■■□□ 15.5
DDX55Q8NHQ9 TRAPPC6A-202ENST00000585934 758 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.86e-8■■■□□ 15.5
DDX55Q8NHQ9 TRAPPC6A-204ENST00000588062 695 ntTSL 2 BASIC19.39■□□□□ 0.696e-8■■■□□ 15.5
DDX55Q8NHQ9 PSMB3-210ENST00000618159 562 ntTSL 211.78□□□□□ -0.528e-8■■■□□ 15.5
DDX55Q8NHQ9 TMED10-201ENST00000303575 4127 ntAPPRIS P1 TSL 1 (best) BASIC7.22□□□□□ -1.251e-6■■■□□ 15.4
DDX55Q8NHQ9 CUTA-208ENST00000482684 837 ntTSL 1 (best)24.31■■□□□ 1.485e-18■■■□□ 15.4
DDX55Q8NHQ9 CUTA-210ENST00000488034 769 ntAPPRIS ALT1 TSL 2 BASIC22.68■■□□□ 1.225e-18■■■□□ 15.4
DDX55Q8NHQ9 CUTA-202ENST00000374496 762 ntAPPRIS P3 TSL 5 BASIC19.64■□□□□ 0.735e-18■■■□□ 15.4
DDX55Q8NHQ9 CUTA-215ENST00000611509 1199 ntAPPRIS P3 TSL 1 (best) BASIC17.44■□□□□ 0.385e-18■■■□□ 15.4
DDX55Q8NHQ9 CUTA-201ENST00000374484 658 ntTSL 316.76■□□□□ 0.275e-18■■■□□ 15.4
DDX55Q8NHQ9 CUTA-203ENST00000374500 937 ntTSL 1 (best) BASIC16.76■□□□□ 0.275e-18■■■□□ 15.4
DDX55Q8NHQ9 CUTA-204ENST00000440279 822 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.165e-18■■■□□ 15.4
DDX55Q8NHQ9 CUTA-206ENST00000465956 961 ntTSL 213.86□□□□□ -0.195e-18■■■□□ 15.4
DDX55Q8NHQ9 CUTA-211ENST00000488478 676 ntTSL 5 BASIC12.79□□□□□ -0.365e-18■■■□□ 15.4
DDX55Q8NHQ9 CUTA-205ENST00000462802 1054 ntTSL 1 (best)11.59□□□□□ -0.555e-18■■■□□ 15.4
DDX55Q8NHQ9 CUTA-209ENST00000487637 1378 ntTSL 211.42□□□□□ -0.585e-18■■■□□ 15.4
DDX55Q8NHQ9 CUTA-213ENST00000494751 731 ntTSL 5 BASIC11.3□□□□□ -0.65e-18■■■□□ 15.4
DDX55Q8NHQ9 CUTA-214ENST00000607266 661 ntAPPRIS P3 TSL 1 (best) BASIC11.16□□□□□ -0.625e-18■■■□□ 15.4
DDX55Q8NHQ9 CUTA-207ENST00000479249 562 ntTSL 310.26□□□□□ -0.775e-18■■■□□ 15.4
DDX55Q8NHQ9 RTFDC1-203ENST00000395881 1572 ntTSL 2 BASIC16.43■□□□□ 0.223e-6■■■□□ 15.4
DDX55Q8NHQ9 RTFDC1-201ENST00000023939 1745 ntTSL 2 BASIC15.96■□□□□ 0.153e-6■■■□□ 15.4
DDX55Q8NHQ9 RTFDC1-202ENST00000357348 2212 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.143e-6■■■□□ 15.4
DDX55Q8NHQ9 RTFDC1-207ENST00000477573 2193 ntTSL 1 (best)13.54□□□□□ -0.243e-6■■■□□ 15.4
DDX55Q8NHQ9 ATP6V0B-204ENST00000471859 865 ntTSL 5 BASIC27.23■■□□□ 1.951e-13■■■□□ 15.4
DDX55Q8NHQ9 SEC31A-205ENST00000395310 4259 ntAPPRIS P4 TSL 1 (best) BASIC13.92□□□□□ -0.184e-29■■■□□ 15.4
DDX55Q8NHQ9 SEC31A-208ENST00000448323 4255 ntAPPRIS P4 TSL 5 BASIC13.7□□□□□ -0.224e-29■■■□□ 15.4
DDX55Q8NHQ9 SEC31A-202ENST00000311785 3909 ntAPPRIS ALT2 TSL 1 (best) BASIC13.29□□□□□ -0.284e-29■■■□□ 15.4
DDX55Q8NHQ9 SEC31A-228ENST00000509142 3861 ntAPPRIS ALT2 TSL 5 BASIC11.67□□□□□ -0.544e-29■■■□□ 15.4
DDX55Q8NHQ9 SEC31A-207ENST00000443462 4042 ntTSL 2 BASIC8.61□□□□□ -1.034e-29■■■□□ 15.4
DDX55Q8NHQ9 SEC31A-213ENST00000503937 1564 ntTSL 1 (best)8.3□□□□□ -1.084e-29■■■□□ 15.4
DDX55Q8NHQ9 SEC31A-209ENST00000500777 3610 ntTSL 5 BASIC5.9□□□□□ -1.464e-29■■■□□ 15.4
DDX55Q8NHQ9 SEC31A-237ENST00000513858 3687 ntTSL 1 (best) BASIC5.26□□□□□ -1.574e-29■■■□□ 15.4
DDX55Q8NHQ9 SEC31A-203ENST00000348405 4012 ntAPPRIS ALT2 TSL 1 (best) BASIC4.71□□□□□ -1.664e-29■■■□□ 15.4
DDX55Q8NHQ9 SEC31A-215ENST00000505472 4159 ntTSL 5 BASIC4.08□□□□□ -1.764e-29■■■□□ 15.4
DDX55Q8NHQ9 C19orf25-213ENST00000592872 1287 ntAPPRIS P1 TSL 2 BASIC25.13■■□□□ 1.615e-7■■■□□ 15.4
DDX55Q8NHQ9 C19orf25-206ENST00000588849 1472 ntTSL 5 BASIC23.36■■□□□ 1.335e-7■■■□□ 15.4
DDX55Q8NHQ9 C19orf25-204ENST00000586564 1265 ntAPPRIS P1 TSL 3 BASIC21.88■■□□□ 1.095e-7■■■□□ 15.4
DDX55Q8NHQ9 C19orf25-201ENST00000427685 1410 ntTSL 2 BASIC21.71■■□□□ 1.075e-7■■■□□ 15.4
DDX55Q8NHQ9 C19orf25-202ENST00000436106 2403 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.015e-7■■■□□ 15.4
DDX55Q8NHQ9 C19orf25-203ENST00000585675 1837 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.945e-7■■■□□ 15.4
DDX55Q8NHQ9 C19orf25-207ENST00000588871 2128 ntTSL 5 BASIC19.22■□□□□ 0.675e-7■■■□□ 15.4
DDX55Q8NHQ9 C19orf25-205ENST00000588427 853 ntTSL 1 (best) BASIC17.67■□□□□ 0.425e-7■■■□□ 15.4
DDX55Q8NHQ9 C19orf25-211ENST00000592486 2314 nt17.14■□□□□ 0.335e-7■■■□□ 15.4
DDX55Q8NHQ9 C19orf25-209ENST00000590621 885 ntTSL 316.91■□□□□ 0.35e-7■■■□□ 15.4
Retrieved 100 of 15,504 protein–RNA pairs in 157.6 ms