Protein–RNA interactions for Protein: P55283

CDH4, Cadherin-4, humanhuman

Predictions only

Length 916 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH4P55283 USP12-201ENST00000282344 4511 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
CDH4P55283 ZBTB42-202ENST00000555360 1411 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
CDH4P55283 HOXA10-201ENST00000283921 2541 ntAPPRIS P2 TSL 1 (best) BASIC21.45■■□□□ 1.02
CDH4P55283 BCAT2-207ENST00000597011 1579 ntTSL 5 BASIC21.44■■□□□ 1.02
CDH4P55283 RBPJL-202ENST00000372741 1636 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
CDH4P55283 GRK3-203ENST00000619906 2873 ntTSL 5 BASIC21.44■■□□□ 1.02
CDH4P55283 EPHX3-202ENST00000435261 1771 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
CDH4P55283 AIDA-202ENST00000355727 1072 ntTSL 5 BASIC21.44■■□□□ 1.02
CDH4P55283 AL121761.1-202ENST00000412571 415 ntTSL 2 BASIC21.44■■□□□ 1.02
CDH4P55283 HMX1-202ENST00000506970 651 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
CDH4P55283 Z97986.1-201ENST00000565879 476 ntTSL 5 BASIC21.44■■□□□ 1.02
CDH4P55283 ELAC1-204ENST00000591429 975 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
CDH4P55283 AP2S1-207ENST00000599990 829 ntAPPRIS ALT1 TSL 2 BASIC21.44■■□□□ 1.02
CDH4P55283 CD58-203ENST00000457047 1328 ntAPPRIS ALT2 TSL 1 (best) BASIC21.44■■□□□ 1.02
CDH4P55283 CACNA1H-210ENST00000638323 8048 ntAPPRIS ALT2 TSL 5 BASIC21.44■■□□□ 1.02
CDH4P55283 BCKDK-201ENST00000219794 2128 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
CDH4P55283 LINC00565-201ENST00000562710 2331 ntBASIC21.44■■□□□ 1.02
CDH4P55283 NFIX-203ENST00000397661 3143 ntTSL 5 BASIC21.44■■□□□ 1.02
CDH4P55283 UNC119-201ENST00000301032 1653 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
CDH4P55283 DOK3-202ENST00000357198 1729 ntTSL 2 BASIC21.43■■□□□ 1.02
CDH4P55283 PDS5A-202ENST00000503396 2685 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
CDH4P55283 GRM6-202ENST00000517717 2673 ntAPPRIS P1 TSL 5 BASIC21.43■■□□□ 1.02
CDH4P55283 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
CDH4P55283 ZGPAT-204ENST00000369967 1890 ntAPPRIS P1 TSL 5 BASIC21.43■■□□□ 1.02
CDH4P55283 IRX4-201ENST00000231357 2221 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
CDH4P55283 Z98882.1-201ENST00000622160 2253 ntBASIC21.43■■□□□ 1.02
CDH4P55283 NELFCD-213ENST00000602795 2305 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
CDH4P55283 DCXR-201ENST00000306869 887 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
CDH4P55283 MRPL39-201ENST00000307301 1199 ntAPPRIS ALT2 TSL 5 BASIC21.43■■□□□ 1.02
CDH4P55283 MRPL39-202ENST00000352957 1110 ntAPPRIS P3 TSL 1 (best) BASIC21.43■■□□□ 1.02
CDH4P55283 SLC22A15-201ENST00000369502 1230 ntTSL 2 BASIC21.43■■□□□ 1.02
CDH4P55283 ZNF451-202ENST00000370702 458 ntTSL 2 BASIC21.43■■□□□ 1.02
CDH4P55283 TMEM218-207ENST00000528724 1117 ntTSL 5 BASIC21.43■■□□□ 1.02
CDH4P55283 TMEM218-214ENST00000532156 954 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
CDH4P55283 GGTLC3-201ENST00000619998 968 ntAPPRIS P1 TSL 5 BASIC21.43■■□□□ 1.02
CDH4P55283 ELOA-201ENST00000418390 5154 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
CDH4P55283 EXOSC6-201ENST00000435634 5153 ntAPPRIS P1 BASIC21.43■■□□□ 1.02
CDH4P55283 ALG1-202ENST00000544428 1419 ntTSL 2 BASIC21.43■■□□□ 1.02
CDH4P55283 OSR2-210ENST00000523368 1519 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
CDH4P55283 CA7-201ENST00000338437 1555 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
CDH4P55283 CDK18-203ENST00000429964 1648 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
CDH4P55283 LYPD1-202ENST00000397463 1891 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
CDH4P55283 ST3GAL3-207ENST00000353126 1969 ntTSL 5 BASIC21.43■■□□□ 1.02
CDH4P55283 ARRB2-201ENST00000269260 1895 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
CDH4P55283 CFD-201ENST00000327726 1201 ntAPPRIS P3 TSL 1 (best) BASIC21.42■■□□□ 1.02
CDH4P55283 PPCS-203ENST00000372561 1431 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
CDH4P55283 PGPEP1L-201ENST00000378919 995 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
CDH4P55283 P4HTM-202ENST00000383729 2127 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
CDH4P55283 CROCCP5-201ENST00000436658 830 ntBASIC21.42■■□□□ 1.02
CDH4P55283 DYM-203ENST00000442713 2147 ntTSL 2 BASIC21.42■■□□□ 1.02
CDH4P55283 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
CDH4P55283 AC073188.6-202ENST00000616616 2281 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
CDH4P55283 ZNF707-222ENST00000532158 2218 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
CDH4P55283 AC007128.1-201ENST00000424460 1853 ntTSL 5 BASIC21.41■■□□□ 1.02
CDH4P55283 ARL6IP4-220ENST00000543566 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC21.41■■□□□ 1.02
CDH4P55283 HOXC9-203ENST00000508190 1505 ntAPPRIS P1 TSL 3 BASIC21.41■■□□□ 1.02
CDH4P55283 TOR2A-201ENST00000336067 1370 ntTSL 2 BASIC21.41■■□□□ 1.02
CDH4P55283 SIRT3-202ENST00000524564 1395 ntTSL 2 BASIC21.41■■□□□ 1.02
CDH4P55283 AL161421.1-201ENST00000619666 1101 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
CDH4P55283 DGAT2-201ENST00000228027 2453 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
CDH4P55283 TBL1Y-202ENST00000355162 2376 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
CDH4P55283 PAQR6-202ENST00000335852 2117 ntTSL 2 BASIC21.41■■□□□ 1.02
CDH4P55283 PARD3-202ENST00000346874 5894 ntAPPRIS ALT2 TSL 1 (best) BASIC21.4■■□□□ 1.02
CDH4P55283 PARD3-203ENST00000350537 5867 ntAPPRIS ALT2 TSL 1 (best) BASIC21.4■■□□□ 1.02
CDH4P55283 OTUB1-211ENST00000543004 1647 ntTSL 5 BASIC21.4■■□□□ 1.02
CDH4P55283 SLC25A42-201ENST00000318596 3120 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
CDH4P55283 CBLN3-201ENST00000267406 2346 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
CDH4P55283 NRG3-201ENST00000372141 2158 ntAPPRIS P3 TSL 1 (best) BASIC21.4■■□□□ 1.02
CDH4P55283 TTYH1-201ENST00000301194 2088 ntAPPRIS ALT1 TSL 1 (best) BASIC21.4■■□□□ 1.02
CDH4P55283 BST1-202ENST00000382346 1993 ntAPPRIS ALT2 TSL 5 BASIC21.4■■□□□ 1.02
CDH4P55283 CRTC2-203ENST00000368633 2644 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
CDH4P55283 TM4SF5-201ENST00000270560 708 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
CDH4P55283 MIR663A-201ENST00000385250 93 ntBASIC21.4■■□□□ 1.02
CDH4P55283 AL645608.9-201ENST00000442292 829 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
CDH4P55283 CD44-222ENST00000526025 1052 ntTSL 2 BASIC21.4■■□□□ 1.02
CDH4P55283 AC005181.1-201ENST00000604782 1256 ntBASIC21.4■■□□□ 1.02
CDH4P55283 PDXK-205ENST00000398081 2251 ntTSL 2 BASIC21.4■■□□□ 1.02
CDH4P55283 DTNB-207ENST00000405222 2273 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
CDH4P55283 C8orf82-201ENST00000313465 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC21.4■■□□□ 1.02
CDH4P55283 NAGPA-202ENST00000381955 2100 ntTSL 5 BASIC21.4■■□□□ 1.02
CDH4P55283 ABHD12B-202ENST00000353130 1477 ntAPPRIS P3 TSL 1 (best) BASIC21.39■■□□□ 1.02
CDH4P55283 PNLIPRP2-204ENST00000591655 1456 ntAPPRIS ALT1 TSL 5 BASIC21.39■■□□□ 1.02
CDH4P55283 RNPEP-201ENST00000295640 2427 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
CDH4P55283 AC068338.2-201ENST00000563278 1430 ntBASIC21.39■■□□□ 1.02
CDH4P55283 PTPRJ-201ENST00000418331 5122 ntAPPRIS P2 TSL 1 (best) BASIC21.39■■□□□ 1.02
CDH4P55283 CACYBP-201ENST00000367679 2766 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
CDH4P55283 ARHGAP27-201ENST00000290470 1376 ntTSL 1 (best) BASIC21.39■■□□□ 1.02
CDH4P55283 JUNB-201ENST00000302754 1820 ntAPPRIS P1 BASIC21.39■■□□□ 1.02
CDH4P55283 UCHL5-204ENST00000367451 1346 ntTSL 5 BASIC21.39■■□□□ 1.01
CDH4P55283 FAM3A-202ENST00000359889 1712 ntAPPRIS P1 TSL 2 BASIC21.39■■□□□ 1.01
CDH4P55283 LSR-202ENST00000354900 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC21.39■■□□□ 1.01
CDH4P55283 LINC01117-201ENST00000443670 699 ntTSL 5 BASIC21.39■■□□□ 1.01
CDH4P55283 AC006970.2-201ENST00000450065 779 ntBASIC21.39■■□□□ 1.01
CDH4P55283 PPP1R14BP3-201ENST00000509033 445 ntBASIC21.39■■□□□ 1.01
CDH4P55283 SLC29A1-207ENST00000393841 2485 ntAPPRIS P1 TSL 2 BASIC21.39■■□□□ 1.01
CDH4P55283 IRAK3-203ENST00000545837 1579 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
CDH4P55283 SCARB2-219ENST00000639738 1517 ntTSL 5 BASIC21.39■■□□□ 1.01
CDH4P55283 CHRNA7-203ENST00000454250 2093 ntAPPRIS ALT2 TSL 2 BASIC21.38■■□□□ 1.01
CDH4P55283 PRKACA-201ENST00000308677 2677 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
CDH4P55283 AC091799.1-201ENST00000422823 811 ntBASIC21.38■■□□□ 1.01
Retrieved 100 of 98,524 protein–RNA pairs in 39.2 ms