Protein–RNA interactions for Protein: P23246

SFPQ, Splicing factor, proline- and glutamine-rich, humanhuman

Known RBP eCLIP

Length 707 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SFPQP23246 NUP210-202ENST00000420141 3134 ntTSL 1 (best)26.45■■□□□ 1.836e-7■□□□□ 8.5
SFPQP23246 NUP210-201ENST00000254508 7193 ntAPPRIS P1 TSL 2 BASIC16.66■□□□□ 0.266e-7■□□□□ 8.5
SFPQP23246 KCMF1-204ENST00000456682 661 ntTSL 329.09■■■□□ 2.256e-7■□□□□ 8.5
SFPQP23246 KCMF1-202ENST00000428691 560 ntTSL 220.57■□□□□ 0.886e-7■□□□□ 8.5
SFPQP23246 KCMF1-201ENST00000409785 7568 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.616e-7■□□□□ 8.5
SFPQP23246 AC092135.3-201ENST00000624151 1846 ntBASIC16.96■□□□□ 0.316e-7■□□□□ 8.5
SFPQP23246 AFDN-221ENST00000511637 5999 ntTSL 1 (best)11.49□□□□□ -0.576e-7■□□□□ 8.5
SFPQP23246 AFDN-217ENST00000507679 670 ntTSL 38.78□□□□□ -16e-7■□□□□ 8.5
SFPQP23246 KCMF1-203ENST00000453448 625 ntTSL 36.32□□□□□ -1.46e-7■□□□□ 8.5
SFPQP23246 NEDD4L-211ENST00000585363 241 ntTSL 56.41□□□□□ -1.385e-9■□□□□ 8.5
SFPQP23246 SYCP2L-201ENST00000283141 3130 ntAPPRIS P2 TSL 1 (best) BASIC16.38■□□□□ 0.214e-10■□□□□ 8.4
SFPQP23246 AL024498.2-201ENST00000480294 1589 ntAPPRIS P1 TSL 2 BASIC16.07■□□□□ 0.164e-10■□□□□ 8.4
SFPQP23246 SYCP2L-202ENST00000341041 3069 ntTSL 213.49□□□□□ -0.254e-10■□□□□ 8.4
SFPQP23246 DUXAP9-201ENST00000547220 665 ntTSL 3 BASIC15.16■□□□□ 0.026e-9■□□□□ 8.4
SFPQP23246 DUXAP9-205ENST00000619938 642 ntTSL 1 (best)12.37□□□□□ -0.436e-9■□□□□ 8.4
SFPQP23246 DUXAP9-203ENST00000610585 903 ntTSL 312.15□□□□□ -0.466e-9■□□□□ 8.4
SFPQP23246 DUXAP9-207ENST00000621361 2397 ntTSL 1 (best)7.08□□□□□ -1.286e-9■□□□□ 8.4
SFPQP23246 NEDD4L-232ENST00000591579 144 ntTSL 1 (best)14.71□□□□□ -0.055e-9■□□□□ 8.4
SFPQP23246 NEDD4L-233ENST00000591989 233 ntTSL 313.81□□□□□ -0.25e-9■□□□□ 8.4
SFPQP23246 NEDD4L-231ENST00000590694 165 ntTSL 55.71□□□□□ -1.55e-9■□□□□ 8.4
SFPQP23246 CUL1-201ENST00000325222 3064 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.32e-7■□□□□ 8.4
SFPQP23246 CUL1-203ENST00000602748 3054 ntAPPRIS P1 TSL 5 BASIC12.81□□□□□ -0.362e-7■□□□□ 8.4
SFPQP23246 CUL1-202ENST00000409469 2857 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.622e-7■□□□□ 8.4
SFPQP23246 CUL1-204ENST00000617797 2508 ntTSL 1 (best) BASIC7.34□□□□□ -1.232e-7■□□□□ 8.4
SFPQP23246 ATF7IP2-213ENST00000565616 610 ntTSL 35.81□□□□□ -1.482e-7■□□□□ 8.4
SFPQP23246 CADM1-201ENST00000331581 1766 ntTSL 1 (best) BASIC24.92■■□□□ 1.581e-6■□□□□ 8.2
SFPQP23246 CADM1-207ENST00000537140 1646 ntTSL 1 (best)24.13■■□□□ 1.451e-6■□□□□ 8.2
SFPQP23246 WWTR1-209ENST00000479238 697 ntTSL 321.57■■□□□ 1.041e-6■□□□□ 8.2
SFPQP23246 CADM1-205ENST00000536781 575 ntTSL 421.26■□□□□ 0.991e-6■□□□□ 8.2
SFPQP23246 CADM1-210ENST00000540951 572 ntTSL 321.26■□□□□ 0.991e-6■□□□□ 8.2
SFPQP23246 WWTR1-201ENST00000360632 2103 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.791e-6■□□□□ 8.2
SFPQP23246 CADM1-218ENST00000545380 2373 ntTSL 1 (best)19.82■□□□□ 0.761e-6■□□□□ 8.2
SFPQP23246 SNX9-201ENST00000392185 4198 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.621e-6■□□□□ 8.2
SFPQP23246 WWTR1-204ENST00000467467 1603 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.581e-6■□□□□ 8.2
SFPQP23246 CADM1-211ENST00000541434 1112 ntTSL 1 (best)17.28■□□□□ 0.361e-6■□□□□ 8.2
SFPQP23246 WWTR1-203ENST00000465804 5030 ntAPPRIS P1 TSL 2 BASIC16.07■□□□□ 0.161e-6■□□□□ 8.2
SFPQP23246 CADM1-204ENST00000536727 3520 ntTSL 1 (best) BASIC15.74■□□□□ 0.111e-6■□□□□ 8.2
SFPQP23246 CADM1-206ENST00000537058 3550 ntTSL 1 (best) BASIC14.79□□□□□ -0.041e-6■□□□□ 8.2
SFPQP23246 ATAD2-201ENST00000287394 5565 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.121e-6■□□□□ 8.2
SFPQP23246 ATAD2-202ENST00000517666 4995 ntTSL 514.15□□□□□ -0.141e-6■□□□□ 8.2
SFPQP23246 CADM1-212ENST00000542447 4223 ntAPPRIS ALT1 TSL 1 (best) BASIC13.6□□□□□ -0.231e-6■□□□□ 8.2
SFPQP23246 NCOA4-203ENST00000580070 1755 ntTSL 2 BASIC13.16□□□□□ -0.31e-6■□□□□ 8.2
SFPQP23246 CRIM1-202ENST00000413985 874 ntTSL 312.3□□□□□ -0.441e-6■□□□□ 8.2
SFPQP23246 ATAD2-204ENST00000521496 3133 ntTSL 1 (best)12.08□□□□□ -0.481e-6■□□□□ 8.2
SFPQP23246 NCOA4-202ENST00000579039 2211 ntTSL 2 BASIC11.87□□□□□ -0.511e-6■□□□□ 8.2
SFPQP23246 CADM1-203ENST00000452722 8588 ntAPPRIS P3 TSL 1 (best) BASIC11.29□□□□□ -0.61e-6■□□□□ 8.2
SFPQP23246 SNX9-202ENST00000614703 542 ntTSL 410.89□□□□□ -0.671e-6■□□□□ 8.2
SFPQP23246 NCOA4-207ENST00000585132 3489 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.671e-6■□□□□ 8.2
SFPQP23246 ATAD2-205ENST00000521903 5143 ntTSL 1 (best) BASIC10.08□□□□□ -0.81e-6■□□□□ 8.2
SFPQP23246 NCOA4-201ENST00000578454 2307 ntTSL 1 (best) BASIC9.23□□□□□ -0.931e-6■□□□□ 8.2
SFPQP23246 NCOA4-204ENST00000581486 3549 ntAPPRIS P1 TSL 1 (best) BASIC8.96□□□□□ -0.981e-6■□□□□ 8.2
SFPQP23246 AC016831.1-202ENST00000447307 726 ntTSL 38.28□□□□□ -1.081e-6■□□□□ 8.2
SFPQP23246 AC016831.1-201ENST00000432045 6411 ntTSL 2 BASIC8.24□□□□□ -1.091e-6■□□□□ 8.2
SFPQP23246 NCOA4-206ENST00000585056 2124 ntTSL 2 BASIC8.09□□□□□ -1.111e-6■□□□□ 8.2
SFPQP23246 AC016831.1-203ENST00000418546 578 ntTSL 47.5□□□□□ -1.211e-6■□□□□ 8.2
SFPQP23246 SNX9-203ENST00000614800 553 ntTSL 47.34□□□□□ -1.231e-6■□□□□ 8.2
SFPQP23246 ATAD2-203ENST00000519124 4650 ntTSL 1 (best)7.21□□□□□ -1.261e-6■□□□□ 8.2
SFPQP23246 CADM1-214ENST00000543249 565 ntTSL 46.49□□□□□ -1.371e-6■□□□□ 8.2
SFPQP23246 CYC1-204ENST00000533444 1832 ntTSL 1 (best)30.18■■■□□ 2.424e-10■□□□□ 8.2
SFPQP23246 CYC1-201ENST00000318911 1240 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.54e-10■□□□□ 8.2
SFPQP23246 CYC1-203ENST00000528618 831 ntTSL 520.51■□□□□ 0.874e-10■□□□□ 8.2
SFPQP23246 TBCD-204ENST00000571316 1509 ntTSL 1 (best)18.99■□□□□ 0.633e-7■□□□□ 8.2
SFPQP23246 EHBP1-220ENST00000496857 1262 ntTSL 1 (best)12.21□□□□□ -0.453e-7■□□□□ 8.2
SFPQP23246 COL27A1-207ENST00000494090 5329 ntTSL 1 (best)22.31■■□□□ 1.162e-8■□□□□ 8.2
SFPQP23246 COL27A1-202ENST00000451716 2865 ntTSL 1 (best)13.73□□□□□ -0.212e-8■□□□□ 8.2
SFPQP23246 IGF2BP3-203ENST00000465058 534 ntTSL 417.69■□□□□ 0.429e-10■□□□□ 8.1
SFPQP23246 IGF2BP3-211ENST00000479504 559 ntTSL 417.69■□□□□ 0.429e-10■□□□□ 8.1
SFPQP23246 IGF2BP3-204ENST00000466809 588 ntTSL 517.48■□□□□ 0.399e-10■□□□□ 8.1
SFPQP23246 IGF2BP3-214ENST00000492771 564 ntTSL 414.55□□□□□ -0.089e-10■□□□□ 8.1
SFPQP23246 IGF2BP3-208ENST00000469723 556 ntTSL 59.03□□□□□ -0.969e-10■□□□□ 8.1
SFPQP23246 IGF2BP3-209ENST00000474105 663 ntTSL 45.83□□□□□ -1.489e-10■□□□□ 8.1
SFPQP23246 ZFX-207ENST00000459724 673 ntTSL 525.9■■□□□ 1.741e-6■□□□□ 8.1
SFPQP23246 TRIM8-204ENST00000487927 761 ntTSL 322.63■■□□□ 1.211e-6■□□□□ 8.1
SFPQP23246 ZFX-204ENST00000379188 7513 ntTSL 5 BASIC9.03□□□□□ -0.961e-6■□□□□ 8.1
SFPQP23246 ZFX-201ENST00000304543 2996 ntAPPRIS P1 TSL 5 BASIC8.71□□□□□ -1.021e-6■□□□□ 8.1
SFPQP23246 ZFX-202ENST00000338565 2906 ntTSL 5 BASIC7.47□□□□□ -1.211e-6■□□□□ 8.1
SFPQP23246 ZFX-211ENST00000539115 6801 ntTSL 1 (best) BASIC6.26□□□□□ -1.411e-6■□□□□ 8.1
SFPQP23246 TRIM24-205ENST00000493595 811 ntTSL 35.59□□□□□ -1.511e-6■□□□□ 8.1
SFPQP23246 ZFX-203ENST00000379177 7558 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.521e-6■□□□□ 8.1
SFPQP23246 CHID1-203ENST00000436108 1477 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.821e-7■□□□□ 8.1
SFPQP23246 CHID1-201ENST00000323578 3374 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.581e-7■□□□□ 8.1
SFPQP23246 CHID1-215ENST00000528581 1431 ntTSL 2 BASIC18.06■□□□□ 0.481e-7■□□□□ 8.1
SFPQP23246 CHID1-202ENST00000429789 1289 ntTSL 1 (best) BASIC15.64■□□□□ 0.091e-7■□□□□ 8.1
SFPQP23246 CHID1-224ENST00000534254 1019 ntTSL 515.2■□□□□ 0.021e-7■□□□□ 8.1
SFPQP23246 CHID1-219ENST00000531859 834 ntTSL 514.49□□□□□ -0.091e-7■□□□□ 8.1
SFPQP23246 CHID1-205ENST00000454838 3255 ntTSL 5 BASIC14.4□□□□□ -0.11e-7■□□□□ 8.1
SFPQP23246 CHID1-204ENST00000449825 3537 ntAPPRIS P1 TSL 5 BASIC13.42□□□□□ -0.261e-7■□□□□ 8.1
SFPQP23246 CHID1-207ENST00000524832 878 ntTSL 212.08□□□□□ -0.481e-7■□□□□ 8.1
SFPQP23246 CHID1-210ENST00000526714 976 ntTSL 511.69□□□□□ -0.541e-7■□□□□ 8.1
SFPQP23246 TRIO-214ENST00000509967 4949 ntTSL 2 BASIC10.8□□□□□ -0.681e-7■□□□□ 8.1
SFPQP23246 NRIP1-204ENST00000411932 720 ntTSL 35.49□□□□□ -1.531e-7■□□□□ 8.1
Retrieved 91 of 4,991 protein–RNA pairs in 28.5 ms