Protein–RNA interactions for Protein: A0A0B4J268

TRAV4, T-cell receptor alpha variable 4 (Fragment), humanhuman

Predictions only

Length 109 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV4A0A0B4J268 RFXAP-201ENST00000255476 2304 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
TRAV4A0A0B4J268 FEM1AP4-201ENST00000443167 1987 ntBASIC15.08■□□□□ 0
TRAV4A0A0B4J268 CDK18-203ENST00000429964 1648 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
TRAV4A0A0B4J268 FXYD7-201ENST00000270310 712 ntAPPRIS P2 TSL 1 (best) BASIC15.08■□□□□ 0
TRAV4A0A0B4J268 LINC01574-201ENST00000512115 560 ntTSL 2 BASIC15.08■□□□□ 0
TRAV4A0A0B4J268 AC010203.1-202ENST00000550096 695 ntTSL 3 BASIC15.08■□□□□ 0
TRAV4A0A0B4J268 AL390816.2-201ENST00000554252 737 ntTSL 3 BASIC15.08■□□□□ 0
TRAV4A0A0B4J268 AC006538.2-201ENST00000586572 543 ntAPPRIS P1 TSL 4 BASIC15.08■□□□□ 0
TRAV4A0A0B4J268 AL031432.3-201ENST00000607698 485 ntBASIC15.08■□□□□ 0
TRAV4A0A0B4J268 AC005224.4-201ENST00000583262 1652 ntBASIC15.08■□□□□ 0
TRAV4A0A0B4J268 RAB24-201ENST00000303251 1311 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
TRAV4A0A0B4J268 BCKDK-201ENST00000219794 2128 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
TRAV4A0A0B4J268 SLC46A3-202ENST00000380814 2121 ntAPPRIS ALT1 TSL 1 (best) BASIC15.08■□□□□ 0
TRAV4A0A0B4J268 POLR2F-205ENST00000442738 2106 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
TRAV4A0A0B4J268 LRRC75A-203ENST00000470794 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC15.08■□□□□ 0
TRAV4A0A0B4J268 EED-201ENST00000263360 2223 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
TRAV4A0A0B4J268 EPHX3-204ENST00000602233 1805 ntAPPRIS P1 TSL 5 BASIC15.08■□□□□ 0
TRAV4A0A0B4J268 POMZP3-202ENST00000310842 1490 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
TRAV4A0A0B4J268 TRAF4-205ENST00000444415 1456 ntTSL 5 BASIC15.08■□□□□ 0
TRAV4A0A0B4J268 MFSD3-201ENST00000301327 1548 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
TRAV4A0A0B4J268 PIP5K1C-201ENST00000335312 5080 ntAPPRIS P3 TSL 1 (best) BASIC15.07■□□□□ 0
TRAV4A0A0B4J268 SLC2A11-202ENST00000316185 1555 ntTSL 1 (best) BASIC15.07■□□□□ 0
TRAV4A0A0B4J268 SEC61A2-205ENST00000379033 2462 ntTSL 2 BASIC15.07■□□□□ 0
TRAV4A0A0B4J268 RAP1B-204ENST00000393436 2049 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
TRAV4A0A0B4J268 MSANTD1-204ENST00000510580 2039 ntTSL 5 BASIC15.07■□□□□ 0
TRAV4A0A0B4J268 PHKA1-204ENST00000373545 6173 ntTSL 5 BASIC15.07■□□□□ 0
TRAV4A0A0B4J268 RUSC1-AS1-203ENST00000450199 1636 ntTSL 1 (best) BASIC15.07■□□□□ 0
TRAV4A0A0B4J268 DUSP2-201ENST00000288943 1688 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
TRAV4A0A0B4J268 IFNGR2-203ENST00000405436 1684 ntTSL 5 BASIC15.07■□□□□ 0
TRAV4A0A0B4J268 AC133555.3-201ENST00000549950 1693 ntAPPRIS P5 TSL 5 BASIC15.07■□□□□ 0
TRAV4A0A0B4J268 AC106782.1-201ENST00000550538 1693 ntAPPRIS P5 TSL 5 BASIC15.07■□□□□ 0
TRAV4A0A0B4J268 KIF12-207ENST00000640217 2194 ntAPPRIS P5 TSL 5 BASIC15.07■□□□□ 0
TRAV4A0A0B4J268 MSL1-204ENST00000578648 2267 ntTSL 5 BASIC15.07■□□□□ 0
TRAV4A0A0B4J268 CDC37L1-202ENST00000381858 1244 ntTSL 5 BASIC15.07■□□□□ 0
TRAV4A0A0B4J268 LRMDA-215ENST00000611255 1040 ntAPPRIS ALT2 TSL 5 BASIC15.07■□□□□ 0
TRAV4A0A0B4J268 MPST-204ENST00000404393 1329 ntTSL 5 BASIC15.07■□□□□ 0
TRAV4A0A0B4J268 PDCD2-203ENST00000443345 1897 ntTSL 1 (best) BASIC15.07■□□□□ 0
TRAV4A0A0B4J268 OSR1-201ENST00000272223 1936 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
TRAV4A0A0B4J268 GSG1L-202ENST00000395724 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC15.07■□□□□ 0
TRAV4A0A0B4J268 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC15.07■□□□□ 0
TRAV4A0A0B4J268 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC15.07■□□□□ 0
TRAV4A0A0B4J268 LRCH4-209ENST00000497245 2014 ntTSL 5 BASIC15.07■□□□□ 0
TRAV4A0A0B4J268 CCDC88B-202ENST00000356786 4915 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
TRAV4A0A0B4J268 VKORC1L1-202ENST00000434382 1541 ntTSL 2 BASIC15.07■□□□□ 0
TRAV4A0A0B4J268 HCN2-201ENST00000251287 3408 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
TRAV4A0A0B4J268 PARN-205ENST00000539279 1557 ntTSL 2 BASIC15.07■□□□□ 0
TRAV4A0A0B4J268 LMO4-202ENST00000370544 5405 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
TRAV4A0A0B4J268 DAPK3-202ENST00000545797 2257 ntAPPRIS P1 TSL 2 BASIC15.06■□□□□ 0
TRAV4A0A0B4J268 PALM-208ENST00000592155 2272 ntTSL 4 BASIC15.06■□□□□ 0
TRAV4A0A0B4J268 TERF1-202ENST00000276603 1677 ntAPPRIS P4 TSL 1 (best) BASIC15.06■□□□□ 0
TRAV4A0A0B4J268 ZDHHC8P1-201ENST00000255890 2382 ntTSL 2 BASIC15.06■□□□□ 0
TRAV4A0A0B4J268 PBX4-201ENST00000251203 1724 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
TRAV4A0A0B4J268 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC15.06■□□□□ 0
TRAV4A0A0B4J268 PXK-203ENST00000383715 1756 ntTSL 5 BASIC15.06■□□□□ 0
TRAV4A0A0B4J268 MAF1-205ENST00000534585 1754 ntTSL 5 BASIC15.06■□□□□ 0
TRAV4A0A0B4J268 PGAM5-204ENST00000543955 1773 ntTSL 2 BASIC15.06■□□□□ 0
TRAV4A0A0B4J268 CD55-205ENST00000367067 1843 ntAPPRIS ALT2 TSL 5 BASIC15.06■□□□□ 0
TRAV4A0A0B4J268 C10orf91-202ENST00000392630 1846 ntTSL 2 BASIC15.06■□□□□ 0
TRAV4A0A0B4J268 COLEC12-201ENST00000400256 5742 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
TRAV4A0A0B4J268 MYH14-206ENST00000596571 5988 ntAPPRIS ALT2 TSL 5 BASIC15.06■□□□□ 0
TRAV4A0A0B4J268 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC15.06■□□□□ 0
TRAV4A0A0B4J268 NXT1-201ENST00000254998 1123 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
TRAV4A0A0B4J268 LAMTOR1-201ENST00000278671 1179 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
TRAV4A0A0B4J268 FAM66D-201ENST00000434078 918 ntTSL 5 BASIC15.06■□□□□ 0
TRAV4A0A0B4J268 STOML2-202ENST00000452248 1296 ntTSL 2 BASIC15.06■□□□□ 0
TRAV4A0A0B4J268 ITGA9-AS1-210ENST00000457661 738 ntTSL 4 BASIC15.06■□□□□ 0
TRAV4A0A0B4J268 CALM1-203ENST00000544280 1064 ntTSL 1 (best) BASIC15.06■□□□□ 0
TRAV4A0A0B4J268 AC142381.2-201ENST00000566120 298 ntBASIC15.06■□□□□ 0
TRAV4A0A0B4J268 STOML2-205ENST00000619795 1293 ntTSL 3 BASIC15.06■□□□□ 0
TRAV4A0A0B4J268 PPP3CC-201ENST00000240139 2189 ntAPPRIS P3 TSL 1 (best) BASIC15.06■□□□□ 0
TRAV4A0A0B4J268 LINC00454-202ENST00000430978 1327 ntTSL 5 BASIC15.06■□□□□ 0
TRAV4A0A0B4J268 NECTIN1-201ENST00000264025 5840 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
TRAV4A0A0B4J268 RAX-202ENST00000334889 3197 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
TRAV4A0A0B4J268 OIP5-AS1-202ENST00000501665 1384 ntTSL 2 BASIC15.06■□□□□ 0
TRAV4A0A0B4J268 AC055733.4-201ENST00000638462 1354 ntBASIC15.06■□□□□ 0
TRAV4A0A0B4J268 ADCK2-201ENST00000072869 2377 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
TRAV4A0A0B4J268 TBR1-202ENST00000410035 1454 ntTSL 2 BASIC15.06■□□□□ 0
TRAV4A0A0B4J268 LGI2-201ENST00000382114 6428 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
TRAV4A0A0B4J268 CBWD3-202ENST00000377342 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC15.06■□□□□ 0
TRAV4A0A0B4J268 HSD11B1L-218ENST00000581773 1687 ntAPPRIS P3 TSL 1 (best) BASIC15.06■□□□□ 0
TRAV4A0A0B4J268 ZFAND6-224ENST00000618205 1659 ntAPPRIS P1 TSL 5 BASIC15.06■□□□□ 0
TRAV4A0A0B4J268 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC15.05■□□□□ 0
TRAV4A0A0B4J268 MTMR12-203ENST00000382142 5187 ntAPPRIS P3 TSL 1 (best) BASIC15.05■□□□□ 0
TRAV4A0A0B4J268 ZNF280B-203ENST00000626650 5721 ntAPPRIS P1 TSL 2 BASIC15.05■□□□□ 0
TRAV4A0A0B4J268 AP003356.1-202ENST00000517910 2770 ntTSL 2 BASIC15.05■□□□□ 0
TRAV4A0A0B4J268 PRDX4-202ENST00000379341 1005 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
TRAV4A0A0B4J268 AC092675.2-201ENST00000413274 541 ntTSL 4 BASIC15.05■□□□□ -0
TRAV4A0A0B4J268 POLR2H-204ENST00000438240 994 ntTSL 3 BASIC15.05■□□□□ -0
TRAV4A0A0B4J268 AL355877.1-204ENST00000451482 1078 ntTSL 1 (best) BASIC15.05■□□□□ -0
TRAV4A0A0B4J268 SUDS3P1-201ENST00000505831 966 ntBASIC15.05■□□□□ -0
TRAV4A0A0B4J268 PTGDR-202ENST00000553372 1216 ntTSL 3 BASIC15.05■□□□□ -0
TRAV4A0A0B4J268 AL354811.1-201ENST00000610286 706 ntBASIC15.05■□□□□ -0
TRAV4A0A0B4J268 MTX2-201ENST00000249442 1364 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
TRAV4A0A0B4J268 KBTBD13-201ENST00000432196 1377 ntAPPRIS P1 BASIC15.05■□□□□ -0
TRAV4A0A0B4J268 MAPK8IP1P2-201ENST00000580257 1472 ntBASIC15.05■□□□□ -0
TRAV4A0A0B4J268 CEBPE-201ENST00000206513 1554 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
TRAV4A0A0B4J268 TPM1-208ENST00000404484 1568 ntTSL 1 (best) BASIC15.05■□□□□ -0
TRAV4A0A0B4J268 ELOA3B-201ENST00000611323 1641 ntAPPRIS P1 BASIC15.05■□□□□ -0
TRAV4A0A0B4J268 ELOA3D-201ENST00000620881 1641 ntAPPRIS P1 BASIC15.05■□□□□ -0
TRAV4A0A0B4J268 PROSER2-205ENST00000622831 1646 ntAPPRIS ALT2 TSL 1 (best) BASIC15.05■□□□□ -0
Retrieved 100 of 98,524 protein–RNA pairs in 19.8 ms