Protein–RNA interactions for Protein: Q9Y5H0

PCDHGA3, Protocadherin gamma-A3, humanhuman

Predictions only

Length 932 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA3Q9Y5H0 DPF1-204ENST00000416611 2341 ntTSL 5 BASIC25.77■■□□□ 1.72
PCDHGA3Q9Y5H0 PSMG4-202ENST00000380305 489 ntTSL 5 BASIC25.76■■□□□ 1.71
PCDHGA3Q9Y5H0 RNF150-204ENST00000507500 1530 ntTSL 1 (best) BASIC25.76■■□□□ 1.71
PCDHGA3Q9Y5H0 BMP7-202ENST00000395864 1746 ntTSL 5 BASIC25.76■■□□□ 1.71
PCDHGA3Q9Y5H0 CISD3-204ENST00000613478 2074 ntAPPRIS P1 TSL 2 BASIC25.76■■□□□ 1.71
PCDHGA3Q9Y5H0 MTCP1-202ENST00000369476 2274 ntAPPRIS P1 TSL 3 BASIC25.76■■□□□ 1.71
PCDHGA3Q9Y5H0 CGREF1-202ENST00000312734 1610 ntAPPRIS P2 TSL 5 BASIC25.75■■□□□ 1.71
PCDHGA3Q9Y5H0 VAX2-201ENST00000234392 1147 ntAPPRIS P1 TSL 1 (best) BASIC25.75■■□□□ 1.71
PCDHGA3Q9Y5H0 HLA-V-202ENST00000446817 847 ntBASIC25.75■■□□□ 1.71
PCDHGA3Q9Y5H0 HGH1-207ENST00000628266 258 ntTSL 5 BASIC25.75■■□□□ 1.71
PCDHGA3Q9Y5H0 LRRC10B-201ENST00000378075 2219 ntAPPRIS P1 BASIC25.75■■□□□ 1.71
PCDHGA3Q9Y5H0 KCNK1-202ENST00000366621 2161 ntAPPRIS P1 TSL 1 (best) BASIC25.74■■□□□ 1.71
PCDHGA3Q9Y5H0 MBP-237ENST00000579129 1052 ntTSL 5 BASIC25.74■■□□□ 1.71
PCDHGA3Q9Y5H0 OLFM2-201ENST00000264833 2019 ntAPPRIS P1 TSL 1 (best) BASIC25.74■■□□□ 1.71
PCDHGA3Q9Y5H0 HDAC3-201ENST00000305264 1959 ntAPPRIS P1 TSL 1 (best) BASIC25.74■■□□□ 1.71
PCDHGA3Q9Y5H0 ZBTB7A-202ENST00000601588 2083 ntAPPRIS P1 TSL 1 (best) BASIC25.73■■□□□ 1.71
PCDHGA3Q9Y5H0 VPS37D-201ENST00000324941 1624 ntAPPRIS P1 TSL 1 (best) BASIC25.73■■□□□ 1.71
PCDHGA3Q9Y5H0 PRKAR1B-201ENST00000360274 2007 ntAPPRIS P1 TSL 1 (best) BASIC25.73■■□□□ 1.71
PCDHGA3Q9Y5H0 DUSP14-206ENST00000617516 1537 ntAPPRIS P1 TSL 1 (best) BASIC25.73■■□□□ 1.71
PCDHGA3Q9Y5H0 CBLN1-201ENST00000219197 2435 ntAPPRIS P1 TSL 1 (best) BASIC25.72■■□□□ 1.71
PCDHGA3Q9Y5H0 AC096888.1-201ENST00000487097 565 ntTSL 4 BASIC25.72■■□□□ 1.71
PCDHGA3Q9Y5H0 HDAC11-206ENST00000405025 576 ntTSL 4 BASIC25.71■■□□□ 1.71
PCDHGA3Q9Y5H0 TRIOBP-205ENST00000407319 2125 ntAPPRIS P3 TSL 1 (best) BASIC25.7■■□□□ 1.71
PCDHGA3Q9Y5H0 LSM14B-204ENST00000370915 1079 ntTSL 1 (best) BASIC25.7■■□□□ 1.7
PCDHGA3Q9Y5H0 MAD2L2-205ENST00000376669 864 ntTSL 3 BASIC25.7■■□□□ 1.7
PCDHGA3Q9Y5H0 TERF2-207ENST00000567296 1129 ntTSL 1 (best) BASIC25.7■■□□□ 1.7
PCDHGA3Q9Y5H0 ACTR3B-202ENST00000377776 1566 ntTSL 1 (best) BASIC25.69■■□□□ 1.7
PCDHGA3Q9Y5H0 SLC35D2-202ENST00000375257 889 ntTSL 2 BASIC25.69■■□□□ 1.7
PCDHGA3Q9Y5H0 HS3ST6-201ENST00000454677 1273 ntAPPRIS P1 TSL 1 (best) BASIC25.69■■□□□ 1.7
PCDHGA3Q9Y5H0 RAMP2-AS1-202ENST00000589716 1985 ntTSL 5 BASIC25.69■■□□□ 1.7
PCDHGA3Q9Y5H0 DUX4L29-201ENST00000425409 679 ntBASIC25.68■■□□□ 1.7
PCDHGA3Q9Y5H0 REPIN1-204ENST00000466559 1022 ntTSL 1 (best) BASIC25.68■■□□□ 1.7
PCDHGA3Q9Y5H0 TMEM80-202ENST00000397512 1572 ntAPPRIS ALT2 TSL 1 (best) BASIC25.68■■□□□ 1.7
PCDHGA3Q9Y5H0 GLT8D1-201ENST00000266014 1849 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
PCDHGA3Q9Y5H0 MNX1-207ENST00000543409 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC25.67■■□□□ 1.7
PCDHGA3Q9Y5H0 RNF130-201ENST00000261947 1766 ntTSL 1 (best) BASIC25.67■■□□□ 1.7
PCDHGA3Q9Y5H0 CPNE1-203ENST00000397442 1695 ntTSL 5 BASIC25.67■■□□□ 1.7
PCDHGA3Q9Y5H0 GTF3C4-202ENST00000483873 1417 ntTSL 3 BASIC25.66■■□□□ 1.7
PCDHGA3Q9Y5H0 MTMR1-214ENST00000542156 1227 ntTSL 1 (best) BASIC25.66■■□□□ 1.7
PCDHGA3Q9Y5H0 GNAI2-202ENST00000313601 2464 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
PCDHGA3Q9Y5H0 MFAP2-202ENST00000375535 1260 ntTSL 1 (best) BASIC25.65■■□□□ 1.7
PCDHGA3Q9Y5H0 WNT5A-AS1-201ENST00000469484 500 ntTSL 3 BASIC25.64■■□□□ 1.7
PCDHGA3Q9Y5H0 BRF1-221ENST00000619151 1530 ntTSL 5 BASIC25.63■■□□□ 1.69
PCDHGA3Q9Y5H0 TXNL4A-210ENST00000591711 669 ntTSL 2 BASIC25.62■■□□□ 1.69
PCDHGA3Q9Y5H0 AC013394.1-201ENST00000629685 808 ntAPPRIS P1 TSL 5 BASIC25.61■■□□□ 1.69
PCDHGA3Q9Y5H0 GSC-201ENST00000238558 1264 ntAPPRIS P1 TSL 1 (best) BASIC25.6■■□□□ 1.69
PCDHGA3Q9Y5H0 AC012615.2-201ENST00000586259 447 ntTSL 4 BASIC25.6■■□□□ 1.69
PCDHGA3Q9Y5H0 NRXN1-228ENST00000628364 2444 ntTSL 5 BASIC25.6■■□□□ 1.69
PCDHGA3Q9Y5H0 AC092647.5-201ENST00000426595 1732 ntAPPRIS P1 TSL 5 BASIC25.6■■□□□ 1.69
PCDHGA3Q9Y5H0 LAPTM4B-203ENST00000521545 915 ntAPPRIS P1 TSL 1 (best) BASIC25.59■■□□□ 1.69
PCDHGA3Q9Y5H0 CAPNS1-211ENST00000590874 926 ntTSL 5 BASIC25.59■■□□□ 1.69
PCDHGA3Q9Y5H0 CGREF1-204ENST00000402550 1575 ntTSL 2 BASIC25.59■■□□□ 1.69
PCDHGA3Q9Y5H0 RP9P-201ENST00000381639 1303 ntTSL 1 (best) BASIC25.59■■□□□ 1.69
PCDHGA3Q9Y5H0 SCARA3-202ENST00000337221 1910 ntTSL 1 (best) BASIC25.59■■□□□ 1.69
PCDHGA3Q9Y5H0 AC187653.1-201ENST00000506382 702 ntAPPRIS P1 TSL 5 BASIC25.58■■□□□ 1.69
PCDHGA3Q9Y5H0 AC108673.1-201ENST00000510422 1159 ntBASIC25.57■■□□□ 1.68
PCDHGA3Q9Y5H0 AC021231.2-201ENST00000594613 730 ntBASIC25.57■■□□□ 1.68
PCDHGA3Q9Y5H0 FAM78B-202ENST00000354422 1475 ntAPPRIS P1 TSL 2 BASIC25.57■■□□□ 1.68
PCDHGA3Q9Y5H0 CIB2-204ENST00000557846 934 ntTSL 3 BASIC25.56■■□□□ 1.68
PCDHGA3Q9Y5H0 RASSF7-202ENST00000397583 1928 ntAPPRIS P3 TSL 1 (best) BASIC25.55■■□□□ 1.68
PCDHGA3Q9Y5H0 AL451007.3-201ENST00000640271 588 ntAPPRIS P1 BASIC25.55■■□□□ 1.68
PCDHGA3Q9Y5H0 LMNTD2-201ENST00000329451 2084 ntAPPRIS P1 TSL 1 (best) BASIC25.55■■□□□ 1.68
PCDHGA3Q9Y5H0 DEXI-201ENST00000331808 1561 ntAPPRIS P1 TSL 1 (best) BASIC25.55■■□□□ 1.68
PCDHGA3Q9Y5H0 CCDC149-203ENST00000502801 1079 ntTSL 1 (best) BASIC25.54■■□□□ 1.68
PCDHGA3Q9Y5H0 ABHD17A-201ENST00000250974 1630 ntTSL 1 (best) BASIC25.54■■□□□ 1.68
PCDHGA3Q9Y5H0 ADRA2C-202ENST00000509482 1600 ntTSL 3 BASIC25.53■■□□□ 1.68
PCDHGA3Q9Y5H0 SSBP4-202ENST00000348495 1721 ntAPPRIS ALT1 TSL 2 BASIC25.53■■□□□ 1.68
PCDHGA3Q9Y5H0 HINT2-201ENST00000259667 628 ntAPPRIS P1 TSL 1 (best) BASIC25.52■■□□□ 1.68
PCDHGA3Q9Y5H0 UBE2L6-201ENST00000287156 1354 ntAPPRIS P1 TSL 1 (best) BASIC25.52■■□□□ 1.68
PCDHGA3Q9Y5H0 SLC2A4RG-201ENST00000266077 1731 ntAPPRIS P1 TSL 1 (best) BASIC25.51■■□□□ 1.68
PCDHGA3Q9Y5H0 AL139393.1-201ENST00000417479 573 ntTSL 5 BASIC25.51■■□□□ 1.67
PCDHGA3Q9Y5H0 ACOT12-204ENST00000513751 612 ntTSL 1 (best) BASIC25.51■■□□□ 1.67
PCDHGA3Q9Y5H0 SCX-201ENST00000567180 999 ntAPPRIS P1 TSL 1 (best) BASIC25.51■■□□□ 1.67
PCDHGA3Q9Y5H0 AP000547.3-202ENST00000592107 1019 ntTSL 1 (best) BASIC25.51■■□□□ 1.67
PCDHGA3Q9Y5H0 UBE2A-207ENST00000628549 934 ntTSL 2 BASIC25.51■■□□□ 1.67
PCDHGA3Q9Y5H0 PXDC1-202ENST00000380283 2190 ntAPPRIS P1 TSL 1 (best) BASIC25.51■■□□□ 1.67
PCDHGA3Q9Y5H0 MACF1-219ENST00000484793 834 ntTSL 2 BASIC25.5■■□□□ 1.67
PCDHGA3Q9Y5H0 UBE2S-203ENST00000589978 496 ntTSL 5 BASIC25.5■■□□□ 1.67
PCDHGA3Q9Y5H0 AC116407.1-201ENST00000398832 1599 ntTSL 2 BASIC25.49■■□□□ 1.67
PCDHGA3Q9Y5H0 ECI1-207ENST00000570258 1512 ntAPPRIS ALT2 TSL 5 BASIC25.49■■□□□ 1.67
PCDHGA3Q9Y5H0 BCL3-201ENST00000164227 2038 ntAPPRIS P1 TSL 1 (best) BASIC25.49■■□□□ 1.67
PCDHGA3Q9Y5H0 RNF215-203ENST00000382363 1992 ntAPPRIS P2 TSL 1 (best) BASIC25.49■■□□□ 1.67
PCDHGA3Q9Y5H0 DDN-AS1-203ENST00000552284 934 ntTSL 3 BASIC25.48■■□□□ 1.67
PCDHGA3Q9Y5H0 MIR6090-201ENST00000622481 60 ntBASIC25.48■■□□□ 1.67
PCDHGA3Q9Y5H0 SLC9A3R2-202ENST00000432365 1564 ntTSL 1 (best) BASIC25.48■■□□□ 1.67
PCDHGA3Q9Y5H0 E2F4-201ENST00000379378 2096 ntAPPRIS P1 TSL 1 (best) BASIC25.47■■□□□ 1.67
PCDHGA3Q9Y5H0 DNLZ-201ENST00000371738 724 ntAPPRIS P1 TSL 1 (best) BASIC25.46■■□□□ 1.67
PCDHGA3Q9Y5H0 CCZ1-201ENST00000325974 1802 ntAPPRIS P1 TSL 1 (best) BASIC25.46■■□□□ 1.67
PCDHGA3Q9Y5H0 STUB1-201ENST00000219548 1472 ntAPPRIS P1 TSL 1 (best) BASIC25.46■■□□□ 1.67
PCDHGA3Q9Y5H0 RCE1-201ENST00000309657 1485 ntAPPRIS P1 TSL 1 (best) BASIC25.46■■□□□ 1.67
PCDHGA3Q9Y5H0 MISP3-202ENST00000587086 1535 ntAPPRIS P2 TSL 1 (best) BASIC25.44■■□□□ 1.66
PCDHGA3Q9Y5H0 DOCK5-202ENST00000410074 786 ntTSL 2 BASIC25.44■■□□□ 1.66
PCDHGA3Q9Y5H0 FOXD3-201ENST00000371116 2086 ntAPPRIS P1 BASIC25.43■■□□□ 1.66
PCDHGA3Q9Y5H0 KCNQ5-204ENST00000370392 1469 ntTSL 1 (best) BASIC25.42■■□□□ 1.66
PCDHGA3Q9Y5H0 HOXB3-207ENST00000472863 1909 ntTSL 2 BASIC25.42■■□□□ 1.66
PCDHGA3Q9Y5H0 CIB1-201ENST00000328649 1247 ntAPPRIS P1 TSL 1 (best) BASIC25.42■■□□□ 1.66
PCDHGA3Q9Y5H0 MIR639-201ENST00000384974 98 ntBASIC25.42■■□□□ 1.66
PCDHGA3Q9Y5H0 RPS2-202ENST00000526522 924 ntTSL 2 BASIC25.42■■□□□ 1.66
PCDHGA3Q9Y5H0 MIR4449-201ENST00000578365 66 ntBASIC25.42■■□□□ 1.66
PCDHGA3Q9Y5H0 CIB1-202ENST00000612800 1096 ntTSL 1 (best) BASIC25.42■■□□□ 1.66
Retrieved 100 of 98,524 protein–RNA pairs in 16.1 ms