Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 SSU72-201ENST00000291386 1290 ntAPPRIS P1 TSL 1 (best) BASIC27.23■■□□□ 1.95
VPS13AQ96RL7 PIGX-201ENST00000296333 953 ntAPPRIS ALT2 TSL 2 BASIC27.23■■□□□ 1.95
VPS13AQ96RL7 HSD11B1L-209ENST00000577917 1553 ntTSL 1 (best) BASIC27.23■■□□□ 1.95
VPS13AQ96RL7 MISP3-202ENST00000587086 1535 ntAPPRIS P2 TSL 1 (best) BASIC27.23■■□□□ 1.95
VPS13AQ96RL7 AC016595.1-201ENST00000559410 383 ntTSL 3 BASIC27.22■■□□□ 1.95
VPS13AQ96RL7 SMARCD3-201ENST00000262188 1993 ntAPPRIS P1 TSL 1 (best) BASIC27.19■■□□□ 1.94
VPS13AQ96RL7 AP000911.3-201ENST00000526377 1130 ntTSL 3 BASIC27.19■■□□□ 1.94
VPS13AQ96RL7 ABHD17AP5-201ENST00000580133 923 ntBASIC27.18■■□□□ 1.94
VPS13AQ96RL7 ECI1-207ENST00000570258 1512 ntAPPRIS ALT2 TSL 5 BASIC27.17■■□□□ 1.94
VPS13AQ96RL7 C16orf95-206ENST00000618367 974 ntAPPRIS ALT2 TSL 2 BASIC27.16■■□□□ 1.94
VPS13AQ96RL7 DEXI-201ENST00000331808 1561 ntAPPRIS P1 TSL 1 (best) BASIC27.16■■□□□ 1.94
VPS13AQ96RL7 DCUN1D5-201ENST00000260247 1337 ntAPPRIS P1 TSL 1 (best) BASIC27.15■■□□□ 1.94
VPS13AQ96RL7 TXNL4A-210ENST00000591711 669 ntTSL 2 BASIC27.15■■□□□ 1.94
VPS13AQ96RL7 DUX4L11-201ENST00000611504 1267 ntBASIC27.15■■□□□ 1.94
VPS13AQ96RL7 DUX4L12-201ENST00000614593 1267 ntBASIC27.15■■□□□ 1.94
VPS13AQ96RL7 DUX4L14-201ENST00000621227 1267 ntBASIC27.15■■□□□ 1.94
VPS13AQ96RL7 GSTP1-202ENST00000398606 965 ntAPPRIS P1 TSL 1 (best) BASIC27.13■■□□□ 1.93
VPS13AQ96RL7 AC005540.1-201ENST00000413911 919 ntTSL 3 BASIC27.12■■□□□ 1.93
VPS13AQ96RL7 CYP26C1-201ENST00000285949 1569 ntAPPRIS P1 TSL 1 (best) BASIC27.12■■□□□ 1.93
VPS13AQ96RL7 MIR6090-201ENST00000622481 60 ntBASIC27.12■■□□□ 1.93
VPS13AQ96RL7 WASH5P-204ENST00000632292 975 ntBASIC27.1■■□□□ 1.93
VPS13AQ96RL7 DUSP14-206ENST00000617516 1537 ntAPPRIS P1 TSL 1 (best) BASIC27.1■■□□□ 1.93
VPS13AQ96RL7 CIB2-204ENST00000557846 934 ntTSL 3 BASIC27.1■■□□□ 1.93
VPS13AQ96RL7 ANXA5-201ENST00000296511 1762 ntAPPRIS P1 TSL 1 (best) BASIC27.1■■□□□ 1.93
VPS13AQ96RL7 STARD10-220ENST00000545082 1085 ntTSL 3 BASIC27.09■■□□□ 1.93
VPS13AQ96RL7 SRP68-213ENST00000629930 165 ntTSL 5 BASIC27.07■■□□□ 1.92
VPS13AQ96RL7 ZBTB25-202ENST00000555220 1440 ntTSL 1 (best) BASIC27.07■■□□□ 1.92
VPS13AQ96RL7 ATRAID-201ENST00000380171 1240 ntTSL 1 (best) BASIC27.07■■□□□ 1.92
VPS13AQ96RL7 C5orf66-AS1-201ENST00000507035 843 ntTSL 2 BASIC27.06■■□□□ 1.92
VPS13AQ96RL7 PLEKHJ1-201ENST00000326631 1206 ntAPPRIS P1 TSL 1 (best) BASIC27.06■■□□□ 1.92
VPS13AQ96RL7 HDAC3-201ENST00000305264 1959 ntAPPRIS P1 TSL 1 (best) BASIC27.06■■□□□ 1.92
VPS13AQ96RL7 CAPNS1-216ENST00000628306 1389 ntTSL 5 BASIC27.06■■□□□ 1.92
VPS13AQ96RL7 SFRP5-201ENST00000266066 1836 ntAPPRIS P1 TSL 1 (best) BASIC27.05■■□□□ 1.92
VPS13AQ96RL7 B4GALT7-201ENST00000029410 1747 ntAPPRIS P1 TSL 1 (best) BASIC27.05■■□□□ 1.92
VPS13AQ96RL7 MAD2L2-207ENST00000376692 1118 ntAPPRIS P1 TSL 1 (best) BASIC27.04■■□□□ 1.92
VPS13AQ96RL7 CSNK1E-205ENST00000405675 2127 ntTSL 5 BASIC27.03■■□□□ 1.92
VPS13AQ96RL7 RRAD-202ENST00000420652 1476 ntAPPRIS P1 TSL 1 (best) BASIC27.03■■□□□ 1.92
VPS13AQ96RL7 U2AF1-203ENST00000398137 1019 ntTSL 1 (best) BASIC27.03■■□□□ 1.92
VPS13AQ96RL7 U2AF1L5-212ENST00000639996 1019 ntTSL 1 (best) BASIC27.03■■□□□ 1.92
VPS13AQ96RL7 RNF126P1-201ENST00000567452 1320 ntBASIC27.02■■□□□ 1.92
VPS13AQ96RL7 POLR3H-201ENST00000337566 1330 ntTSL 1 (best) BASIC27.02■■□□□ 1.92
VPS13AQ96RL7 KHSRP-213ENST00000619396 2226 ntAPPRIS ALT2 TSL 5 BASIC27.02■■□□□ 1.92
VPS13AQ96RL7 CRIP1-201ENST00000330233 1311 ntAPPRIS P1 TSL 1 (best) BASIC27.01■■□□□ 1.91
VPS13AQ96RL7 C1orf232-201ENST00000634842 643 ntAPPRIS P5 TSL 5 BASIC27.01■■□□□ 1.91
VPS13AQ96RL7 IGFBP2-201ENST00000233809 1439 ntAPPRIS P1 TSL 1 (best) BASIC27.01■■□□□ 1.91
VPS13AQ96RL7 MAPK3-202ENST00000322266 1743 ntTSL 5 BASIC27.01■■□□□ 1.91
VPS13AQ96RL7 DOCK5-202ENST00000410074 786 ntTSL 2 BASIC27.01■■□□□ 1.91
VPS13AQ96RL7 CGREF1-204ENST00000402550 1575 ntTSL 2 BASIC27■■□□□ 1.91
VPS13AQ96RL7 UBE2A-207ENST00000628549 934 ntTSL 2 BASIC26.99■■□□□ 1.91
VPS13AQ96RL7 METRNL-202ENST00000570778 967 ntTSL 5 BASIC26.99■■□□□ 1.91
VPS13AQ96RL7 RUNX2-211ENST00000625924 1458 ntAPPRIS ALT2 TSL 1 (best) BASIC26.98■■□□□ 1.91
VPS13AQ96RL7 MAPK3-205ENST00000395202 1008 ntTSL 1 (best) BASIC26.98■■□□□ 1.91
VPS13AQ96RL7 PTPMT1-203ENST00000426530 1014 ntTSL 1 (best) BASIC26.98■■□□□ 1.91
VPS13AQ96RL7 TRAPPC10-202ENST00000380221 1763 ntTSL 1 (best) BASIC26.98■■□□□ 1.91
VPS13AQ96RL7 STUB1-201ENST00000219548 1472 ntAPPRIS P1 TSL 1 (best) BASIC26.98■■□□□ 1.91
VPS13AQ96RL7 CHMP4B-201ENST00000217402 1646 ntAPPRIS P1 TSL 1 (best) BASIC26.97■■□□□ 1.91
VPS13AQ96RL7 JUND-201ENST00000252818 1863 ntAPPRIS P1 BASIC26.96■■□□□ 1.91
VPS13AQ96RL7 UBE2S-203ENST00000589978 496 ntTSL 5 BASIC26.96■■□□□ 1.91
VPS13AQ96RL7 H2AFV-204ENST00000350771 687 ntTSL 2 BASIC26.95■■□□□ 1.91
VPS13AQ96RL7 AKR1E2-201ENST00000298375 1566 ntAPPRIS P1 TSL 1 (best) BASIC26.95■■□□□ 1.91
VPS13AQ96RL7 ADRA2C-201ENST00000330055 2129 ntAPPRIS P1 BASIC26.94■■□□□ 1.9
VPS13AQ96RL7 RHOC-202ENST00000339083 1418 ntAPPRIS P1 TSL 1 (best) BASIC26.94■■□□□ 1.9
VPS13AQ96RL7 RAB12-201ENST00000329286 2137 ntAPPRIS P1 TSL 1 (best) BASIC26.94■■□□□ 1.9
VPS13AQ96RL7 DUX4L13-201ENST00000554103 1267 ntBASIC26.93■■□□□ 1.9
VPS13AQ96RL7 DUX4L15-201ENST00000611059 1267 ntBASIC26.93■■□□□ 1.9
VPS13AQ96RL7 DUX4L23-201ENST00000615195 1269 ntBASIC26.93■■□□□ 1.9
VPS13AQ96RL7 DUX4L24-201ENST00000617576 1269 ntBASIC26.93■■□□□ 1.9
VPS13AQ96RL7 DUX4L22-201ENST00000618238 1269 ntBASIC26.93■■□□□ 1.9
VPS13AQ96RL7 DUX4L20-201ENST00000619712 1269 ntBASIC26.93■■□□□ 1.9
VPS13AQ96RL7 DUX4L21-201ENST00000622058 1269 ntBASIC26.93■■□□□ 1.9
VPS13AQ96RL7 DUX4L10-201ENST00000622460 1267 ntBASIC26.93■■□□□ 1.9
VPS13AQ96RL7 DUX4L25-201ENST00000624915 1269 ntBASIC26.93■■□□□ 1.9
VPS13AQ96RL7 POLR1D-201ENST00000302979 1166 ntAPPRIS P2 TSL 1 (best) BASIC26.93■■□□□ 1.9
VPS13AQ96RL7 AC009041.3-201ENST00000564390 879 ntTSL 5 BASIC26.91■■□□□ 1.9
VPS13AQ96RL7 RANBP1-202ENST00000402752 1132 ntAPPRIS ALT1 TSL 1 (best) BASIC26.91■■□□□ 1.9
VPS13AQ96RL7 HNRNPUL1-221ENST00000617305 1018 ntTSL 1 (best) BASIC26.91■■□□□ 1.9
VPS13AQ96RL7 FKBP1A-210ENST00000614856 562 ntTSL 2 BASIC26.9■■□□□ 1.9
VPS13AQ96RL7 QDPR-201ENST00000281243 1648 ntAPPRIS P1 TSL 1 (best) BASIC26.9■■□□□ 1.9
VPS13AQ96RL7 ENHO-201ENST00000399775 1082 ntAPPRIS P1 TSL 2 BASIC26.9■■□□□ 1.9
VPS13AQ96RL7 AGAP1-204ENST00000409457 2165 ntTSL 1 (best) BASIC26.88■■□□□ 1.89
VPS13AQ96RL7 MXD3-208ENST00000513063 861 ntAPPRIS P1 TSL 5 BASIC26.87■■□□□ 1.89
VPS13AQ96RL7 AC108673.1-201ENST00000510422 1159 ntBASIC26.87■■□□□ 1.89
VPS13AQ96RL7 PABPN1-201ENST00000216727 2001 ntAPPRIS P2 TSL 1 (best) BASIC26.86■■□□□ 1.89
VPS13AQ96RL7 DTNBP1-202ENST00000344537 1403 ntAPPRIS P1 TSL 1 (best) BASIC26.86■■□□□ 1.89
VPS13AQ96RL7 GALK1-205ENST00000588479 1866 ntAPPRIS P1 TSL 1 (best) BASIC26.86■■□□□ 1.89
VPS13AQ96RL7 KLC2-205ENST00000394078 1557 ntTSL 5 BASIC26.86■■□□□ 1.89
VPS13AQ96RL7 GPX1-201ENST00000419349 1106 ntBASIC26.84■■□□□ 1.89
VPS13AQ96RL7 MMP28-203ENST00000612672 1092 ntTSL 1 (best) BASIC26.84■■□□□ 1.89
VPS13AQ96RL7 ARL6IP4-211ENST00000454885 1318 ntAPPRIS ALT2 TSL 1 (best) BASIC26.84■■□□□ 1.89
VPS13AQ96RL7 METTL24-201ENST00000338882 1119 ntAPPRIS P1 TSL 5 BASIC26.83■■□□□ 1.89
VPS13AQ96RL7 KMT2E-AS1-201ENST00000453677 736 ntTSL 3 BASIC26.83■■□□□ 1.89
VPS13AQ96RL7 PRSS41-201ENST00000399677 1127 ntAPPRIS P1 TSL 5 BASIC26.83■■□□□ 1.89
VPS13AQ96RL7 NTF6A-201ENST00000591175 560 ntBASIC26.83■■□□□ 1.88
VPS13AQ96RL7 BLOC1S3-202ENST00000587722 732 ntAPPRIS P1 BASIC26.82■■□□□ 1.88
VPS13AQ96RL7 U2AF1L5-201ENST00000610664 897 ntAPPRIS P5 TSL 1 (best) BASIC26.82■■□□□ 1.88
VPS13AQ96RL7 HES6-205ENST00000409356 528 ntTSL 2 BASIC26.82■■□□□ 1.88
VPS13AQ96RL7 PTCH1-210ENST00000468211 1254 ntTSL 1 (best) BASIC26.82■■□□□ 1.88
VPS13AQ96RL7 AP000547.3-202ENST00000592107 1019 ntTSL 1 (best) BASIC26.81■■□□□ 1.88
VPS13AQ96RL7 KCNK1-202ENST00000366621 2161 ntAPPRIS P1 TSL 1 (best) BASIC26.81■■□□□ 1.88
VPS13AQ96RL7 AC068134.2-201ENST00000437095 576 ntTSL 3 BASIC26.81■■□□□ 1.88
Retrieved 100 of 98,524 protein–RNA pairs in 989.7 ms