Protein–RNA interactions for Protein: Q6PD62

CTR9, RNA polymerase-associated protein CTR9 homolog, humanhuman

Predictions only

Length 1,173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTR9Q6PD62 CNIH2-203ENST00000528852 1524 ntAPPRIS ALT1 TSL 1 (best) BASIC31.83■■■□□ 2.69
CTR9Q6PD62 TUSC1-201ENST00000358022 2052 ntAPPRIS P1 BASIC31.83■■■□□ 2.69
CTR9Q6PD62 ABHD12-201ENST00000339157 2117 ntAPPRIS P1 TSL 2 BASIC31.82■■■□□ 2.69
CTR9Q6PD62 RPS2-209ENST00000529806 993 ntTSL 3 BASIC31.82■■■□□ 2.68
CTR9Q6PD62 BHLHE23-201ENST00000370346 1057 ntAPPRIS P1 BASIC31.81■■■□□ 2.68
CTR9Q6PD62 UBP1-201ENST00000283628 2074 ntAPPRIS P3 TSL 2 BASIC31.8■■■□□ 2.68
CTR9Q6PD62 AC044849.2-201ENST00000606596 710 ntBASIC31.79■■■□□ 2.68
CTR9Q6PD62 UCK1-201ENST00000372208 2063 ntTSL 1 (best) BASIC31.79■■■□□ 2.68
CTR9Q6PD62 GTF3C4-202ENST00000483873 1417 ntTSL 3 BASIC31.78■■■□□ 2.68
CTR9Q6PD62 PANK2-207ENST00000610179 1807 ntAPPRIS ALT2 TSL 1 (best) BASIC31.78■■■□□ 2.68
CTR9Q6PD62 TCEA2-202ENST00000343484 1235 ntAPPRIS P1 TSL 1 (best) BASIC31.78■■■□□ 2.68
CTR9Q6PD62 PSMG4-202ENST00000380305 489 ntTSL 5 BASIC31.78■■■□□ 2.68
CTR9Q6PD62 MLST8-203ENST00000397124 1691 ntAPPRIS P3 TSL 5 BASIC31.78■■■□□ 2.68
CTR9Q6PD62 AC012615.2-201ENST00000586259 447 ntTSL 4 BASIC31.77■■■□□ 2.68
CTR9Q6PD62 TCEA2-204ENST00000395053 1733 ntTSL 1 (best) BASIC31.77■■■□□ 2.68
CTR9Q6PD62 MSX1-201ENST00000382723 1939 ntAPPRIS P1 TSL 1 (best) BASIC31.77■■■□□ 2.68
CTR9Q6PD62 ELK4-201ENST00000289703 2118 ntTSL 1 (best) BASIC31.76■■■□□ 2.68
CTR9Q6PD62 PPP1R14B-201ENST00000309318 982 ntAPPRIS P1 TSL 1 (best) BASIC31.76■■■□□ 2.67
CTR9Q6PD62 AL139393.1-201ENST00000417479 573 ntTSL 5 BASIC31.76■■■□□ 2.67
CTR9Q6PD62 TERF2-207ENST00000567296 1129 ntTSL 1 (best) BASIC31.76■■■□□ 2.67
CTR9Q6PD62 SRSF9-201ENST00000229390 1201 ntAPPRIS P1 TSL 1 (best) BASIC31.73■■■□□ 2.67
CTR9Q6PD62 GLRX5-201ENST00000331334 1564 ntAPPRIS P1 TSL 1 (best) BASIC31.73■■■□□ 2.67
CTR9Q6PD62 KCNK3-202ENST00000620977 1956 ntTSL 1 (best) BASIC31.72■■■□□ 2.67
CTR9Q6PD62 CDKN2A-201ENST00000304494 1218 ntTSL 1 (best) BASIC31.72■■■□□ 2.67
CTR9Q6PD62 MAD2L2-205ENST00000376669 864 ntTSL 3 BASIC31.72■■■□□ 2.67
CTR9Q6PD62 TFEB-204ENST00000373033 2331 ntAPPRIS P1 TSL 1 (best) BASIC31.72■■■□□ 2.67
CTR9Q6PD62 HES7-202ENST00000541682 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC31.71■■■□□ 2.67
CTR9Q6PD62 GLT8D1-201ENST00000266014 1849 ntAPPRIS P1 TSL 1 (best) BASIC31.71■■■□□ 2.67
CTR9Q6PD62 CIB1-201ENST00000328649 1247 ntAPPRIS P1 TSL 1 (best) BASIC31.71■■■□□ 2.67
CTR9Q6PD62 NPHP3-202ENST00000383282 782 ntTSL 1 (best) BASIC31.71■■■□□ 2.67
CTR9Q6PD62 CIB1-202ENST00000612800 1096 ntTSL 1 (best) BASIC31.71■■■□□ 2.67
CTR9Q6PD62 FOXD3-201ENST00000371116 2086 ntAPPRIS P1 BASIC31.7■■■□□ 2.67
CTR9Q6PD62 JMJD8-216ENST00000609261 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC31.7■■■□□ 2.67
CTR9Q6PD62 PI4KAP1-202ENST00000611748 1906 ntTSL 1 (best) BASIC31.69■■■□□ 2.66
CTR9Q6PD62 AVEN-201ENST00000306730 1605 ntAPPRIS P1 TSL 1 (best) BASIC31.69■■■□□ 2.66
CTR9Q6PD62 TXNL4A-210ENST00000591711 669 ntTSL 2 BASIC31.68■■■□□ 2.66
CTR9Q6PD62 NRG3-203ENST00000404547 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC31.68■■■□□ 2.66
CTR9Q6PD62 COPRS-202ENST00000378634 1041 ntTSL 2 BASIC31.67■■■□□ 2.66
CTR9Q6PD62 ZFAND2B-206ENST00000409336 944 ntAPPRIS P1 TSL 5 BASIC31.67■■■□□ 2.66
CTR9Q6PD62 ZFAND2B-221ENST00000621130 1070 ntTSL 5 BASIC31.67■■■□□ 2.66
CTR9Q6PD62 HOXB3-210ENST00000489475 1845 ntTSL 2 BASIC31.67■■■□□ 2.66
CTR9Q6PD62 BTBD19-203ENST00000450269 1572 ntAPPRIS P1 TSL 5 BASIC31.67■■■□□ 2.66
CTR9Q6PD62 NPTXR-202ENST00000640136 1503 ntAPPRIS P2 TSL 1 (best) BASIC31.66■■■□□ 2.66
CTR9Q6PD62 MFAP2-202ENST00000375535 1260 ntTSL 1 (best) BASIC31.66■■■□□ 2.66
CTR9Q6PD62 GUSB-202ENST00000421103 1742 ntTSL 2 BASIC31.64■■■□□ 2.66
CTR9Q6PD62 VAX2-201ENST00000234392 1147 ntAPPRIS P1 TSL 1 (best) BASIC31.64■■■□□ 2.66
CTR9Q6PD62 VEGFA-207ENST00000413642 1197 ntAPPRIS ALT2 TSL 1 (best) BASIC31.64■■■□□ 2.66
CTR9Q6PD62 XKR6-201ENST00000297303 1550 ntTSL 1 (best) BASIC31.64■■■□□ 2.65
CTR9Q6PD62 KLHL35-204ENST00000539798 1936 ntAPPRIS P1 TSL 1 (best) BASIC31.63■■■□□ 2.65
CTR9Q6PD62 AP000547.3-202ENST00000592107 1019 ntTSL 1 (best) BASIC31.63■■■□□ 2.65
CTR9Q6PD62 RCE1-201ENST00000309657 1485 ntAPPRIS P1 TSL 1 (best) BASIC31.63■■■□□ 2.65
CTR9Q6PD62 NOG-201ENST00000332822 1892 ntAPPRIS P1 BASIC31.62■■■□□ 2.65
CTR9Q6PD62 PIK3R2-208ENST00000617642 1446 ntTSL 5 BASIC31.61■■■□□ 2.65
CTR9Q6PD62 MPST-206ENST00000429360 1331 ntTSL 1 (best) BASIC31.61■■■□□ 2.65
CTR9Q6PD62 BOD1-201ENST00000285908 1286 ntTSL 1 (best) BASIC31.61■■■□□ 2.65
CTR9Q6PD62 BOD1-206ENST00000480951 814 ntTSL 2 BASIC31.61■■■□□ 2.65
CTR9Q6PD62 ATP6V1E2-204ENST00000522587 1559 ntAPPRIS P1 TSL 3 BASIC31.6■■■□□ 2.65
CTR9Q6PD62 HDAC11-206ENST00000405025 576 ntTSL 4 BASIC31.59■■■□□ 2.65
CTR9Q6PD62 CERS2-201ENST00000271688 2544 ntAPPRIS P1 TSL 5 BASIC31.58■■■□□ 2.65
CTR9Q6PD62 GLRB-203ENST00000509282 1757 ntAPPRIS P1 TSL 1 (best) BASIC31.58■■■□□ 2.65
CTR9Q6PD62 LRRC61-202ENST00000359623 1877 ntAPPRIS P1 TSL 2 BASIC31.58■■■□□ 2.65
CTR9Q6PD62 SCX-201ENST00000567180 999 ntAPPRIS P1 TSL 1 (best) BASIC31.57■■■□□ 2.64
CTR9Q6PD62 UBE2S-203ENST00000589978 496 ntTSL 5 BASIC31.57■■■□□ 2.64
CTR9Q6PD62 MIR6090-201ENST00000622481 60 ntBASIC31.57■■■□□ 2.64
CTR9Q6PD62 NOP53-201ENST00000246802 1528 ntAPPRIS P1 TSL 1 (best) BASIC31.57■■■□□ 2.64
CTR9Q6PD62 FADS3-201ENST00000278829 1779 ntAPPRIS P1 TSL 1 (best) BASIC31.57■■■□□ 2.64
CTR9Q6PD62 MBOAT7-203ENST00000391754 1797 ntTSL 1 (best) BASIC31.57■■■□□ 2.64
CTR9Q6PD62 TNK2-201ENST00000333602 5270 ntAPPRIS P1 TSL 1 (best) BASIC31.57■■■□□ 2.64
CTR9Q6PD62 POU3F1-201ENST00000373012 2184 ntAPPRIS P1 BASIC31.56■■■□□ 2.64
CTR9Q6PD62 MAPK12-201ENST00000215659 1918 ntAPPRIS P1 TSL 1 (best) BASIC31.56■■■□□ 2.64
CTR9Q6PD62 MAFA-201ENST00000333480 2347 ntAPPRIS P1 BASIC31.56■■■□□ 2.64
CTR9Q6PD62 NOXA1-201ENST00000341349 1678 ntAPPRIS P1 TSL 1 (best) BASIC31.56■■■□□ 2.64
CTR9Q6PD62 HMX1-201ENST00000400677 1895 ntAPPRIS P1 TSL 1 (best) BASIC31.56■■■□□ 2.64
CTR9Q6PD62 COL13A1-212ENST00000520133 1833 ntTSL 5 BASIC31.56■■■□□ 2.64
CTR9Q6PD62 PLEKHG6-206ENST00000536531 1683 ntTSL 1 (best) BASIC31.54■■■□□ 2.64
CTR9Q6PD62 CHPT1-201ENST00000229266 1585 ntAPPRIS P2 TSL 1 (best) BASIC31.53■■■□□ 2.64
CTR9Q6PD62 HSPB11-201ENST00000194214 915 ntAPPRIS P1 TSL 1 (best) BASIC31.53■■■□□ 2.64
CTR9Q6PD62 NME2-202ENST00000393190 866 ntAPPRIS P1 TSL 1 (best) BASIC31.52■■■□□ 2.64
CTR9Q6PD62 AC108673.1-201ENST00000510422 1159 ntBASIC31.52■■■□□ 2.64
CTR9Q6PD62 GKAP1-203ENST00000376371 1778 ntAPPRIS P1 TSL 1 (best) BASIC31.52■■■□□ 2.64
CTR9Q6PD62 MISP3-202ENST00000587086 1535 ntAPPRIS P2 TSL 1 (best) BASIC31.51■■■□□ 2.63
CTR9Q6PD62 DPF1-204ENST00000416611 2341 ntTSL 5 BASIC31.51■■■□□ 2.63
CTR9Q6PD62 ABHD17AP4-201ENST00000411545 909 ntBASIC31.5■■■□□ 2.63
CTR9Q6PD62 ZNF706-207ENST00000519882 959 ntAPPRIS P1 TSL 3 BASIC31.5■■■□□ 2.63
CTR9Q6PD62 ZNF706-213ENST00000521272 732 ntAPPRIS P1 TSL 5 BASIC31.5■■■□□ 2.63
CTR9Q6PD62 MYLIP-202ENST00000356840 1666 ntAPPRIS P1 TSL 1 (best) BASIC31.5■■■□□ 2.63
CTR9Q6PD62 SHC2-201ENST00000264554 2494 ntAPPRIS P1 TSL 1 (best) BASIC31.5■■■□□ 2.63
CTR9Q6PD62 MLEC-202ENST00000412616 841 ntTSL 3 BASIC31.49■■■□□ 2.63
CTR9Q6PD62 ECI1-207ENST00000570258 1512 ntAPPRIS ALT2 TSL 5 BASIC31.49■■■□□ 2.63
CTR9Q6PD62 KLC2-205ENST00000394078 1557 ntTSL 5 BASIC31.48■■■□□ 2.63
CTR9Q6PD62 POLR1D-201ENST00000302979 1166 ntAPPRIS P2 TSL 1 (best) BASIC31.48■■■□□ 2.63
CTR9Q6PD62 BATF3-201ENST00000243440 980 ntAPPRIS P1 TSL 1 (best) BASIC31.47■■■□□ 2.63
CTR9Q6PD62 TRAM2-AS1-201ENST00000453216 664 ntTSL 3 BASIC31.46■■■□□ 2.63
CTR9Q6PD62 DTNBP1-202ENST00000344537 1403 ntAPPRIS P1 TSL 1 (best) BASIC31.44■■■□□ 2.62
CTR9Q6PD62 TPRA1-201ENST00000296210 1725 ntTSL 1 (best) BASIC31.44■■■□□ 2.62
CTR9Q6PD62 AC004540.2-201ENST00000451368 611 ntTSL 2 BASIC31.43■■■□□ 2.62
CTR9Q6PD62 PGM5-201ENST00000396392 1782 ntTSL 1 (best) BASIC31.43■■■□□ 2.62
CTR9Q6PD62 TPRG1L-202ENST00000378344 2414 ntAPPRIS P1 TSL 2 BASIC31.43■■■□□ 2.62
CTR9Q6PD62 DOCK5-202ENST00000410074 786 ntTSL 2 BASIC31.42■■■□□ 2.62
CTR9Q6PD62 PABPC1L2B-AS1-201ENST00000416989 1167 ntTSL 3 BASIC31.42■■■□□ 2.62
Retrieved 100 of 98,524 protein–RNA pairs in 91.3 ms