Protein–RNA interactions for Protein: P83369

LSM11, U7 snRNA-associated Sm-like protein LSm11, humanhuman

Known RBP eCLIP

Length 360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LSM11P83369 POLL-210ENST00000429502 784 ntTSL 513.6□□□□□ -0.234e-11■■■■■ 48.2
LSM11P83369 POLL-204ENST00000370168 1536 ntTSL 1 (best) BASIC13.49□□□□□ -0.254e-11■■■■■ 48.2
LSM11P83369 POLL-205ENST00000370169 2360 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.274e-11■■■■■ 48.2
LSM11P83369 POLL-202ENST00000339310 2289 ntTSL 1 (best) BASIC12.65□□□□□ -0.384e-11■■■■■ 48.2
LSM11P83369 GABRG3-208ENST00000615808 10768 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.44e-11■■■■■ 48.2
LSM11P83369 POLL-208ENST00000415897 1457 ntTSL 512.56□□□□□ -0.44e-11■■■■■ 48.2
LSM11P83369 POLL-201ENST00000299206 2670 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.494e-11■■■■■ 48.2
LSM11P83369 POLL-203ENST00000370162 2792 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.514e-11■■■■■ 48.2
LSM11P83369 POLL-215ENST00000470140 788 ntTSL 511.86□□□□□ -0.514e-11■■■■■ 48.2
LSM11P83369 POLL-216ENST00000485369 776 ntTSL 58.26□□□□□ -1.094e-11■■■■■ 48.2
LSM11P83369 MYO18B-202ENST00000407587 8090 ntAPPRIS ALT2 TSL 1 (best) BASIC11.14□□□□□ -0.638e-21■■■■■ 47.3
LSM11P83369 MYO18B-201ENST00000335473 8565 ntAPPRIS P3 TSL 1 (best) BASIC10.66□□□□□ -0.78e-21■■■■■ 47.3
LSM11P83369 MYO18B-205ENST00000536101 8051 ntAPPRIS P3 TSL 1 (best) BASIC9.92□□□□□ -0.828e-21■■■■■ 47.3
LSM11P83369 ZNF326-203ENST00000370447 9433 ntAPPRIS ALT2 TSL 1 (best) BASIC6.2□□□□□ -1.428e-21■■■■■ 47.3
LSM11P83369 ADK-206ENST00000541550 2222 ntTSL 2 BASIC17.62■□□□□ 0.413e-14■■■■■ 47.1
LSM11P83369 ADK-202ENST00000372734 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC16.84■□□□□ 0.293e-14■■■■■ 47.1
LSM11P83369 ADK-205ENST00000539909 1866 ntTSL 2 BASIC13.73□□□□□ -0.213e-14■■■■■ 47.1
LSM11P83369 ADK-201ENST00000286621 1169 ntAPPRIS P4 TSL 1 (best) BASIC9.51□□□□□ -0.893e-14■■■■■ 47.1
LSM11P83369 MNAT1-205ENST00000554641 596 ntTSL 314.71□□□□□ -0.054e-8■■■■■ 47
LSM11P83369 MNAT1-209ENST00000557134 680 ntTSL 314.32□□□□□ -0.124e-8■■■■■ 47
LSM11P83369 MNAT1-202ENST00000539616 1220 ntTSL 1 (best) BASIC12.35□□□□□ -0.434e-8■■■■■ 47
LSM11P83369 MNAT1-201ENST00000261245 2635 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.554e-8■■■■■ 47
LSM11P83369 MNAT1-204ENST00000554002 616 ntTSL 39.83□□□□□ -0.844e-8■■■■■ 47
LSM11P83369 HIST1H4B-201ENST00000377745 438 ntAPPRIS P1 BASIC11.57□□□□□ -0.568e-23■■■■■ 46.7
LSM11P83369 HNRNPUL1-221ENST00000617305 1018 ntTSL 1 (best) BASIC21.22■□□□□ 0.991e-10■■■■■ 46.3
LSM11P83369 HNRNPUL1-222ENST00000617774 451 ntTSL 5 BASIC20.13■□□□□ 0.811e-10■■■■■ 46.3
LSM11P83369 PRDX1-206ENST00000483583 530 ntTSL 219.4■□□□□ 0.71e-10■■■■■ 46.3
LSM11P83369 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.691e-10■■■■■ 46.3
LSM11P83369 PRDX1-201ENST00000262746 1234 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.391e-10■■■■■ 46.3
LSM11P83369 HNRNPUL1-203ENST00000378215 2864 ntTSL 2 BASIC17.14■□□□□ 0.331e-10■■■■■ 46.3
LSM11P83369 HNRNPUL1-220ENST00000602130 2932 ntAPPRIS ALT2 TSL 1 (best) BASIC14.63□□□□□ -0.071e-10■■■■■ 46.3
LSM11P83369 HNRNPUL1-208ENST00000595196 3043 ntTSL 1 (best)14.29□□□□□ -0.121e-10■■■■■ 46.3
LSM11P83369 HNRNPUL1-213ENST00000599614 2447 ntTSL 514.2□□□□□ -0.141e-10■■■■■ 46.3
LSM11P83369 HNRNPUL1-201ENST00000263367 2952 ntTSL 2 BASIC14.1□□□□□ -0.151e-10■■■■■ 46.3
LSM11P83369 HNRNPUL1-205ENST00000593587 2725 ntTSL 2 BASIC13.73□□□□□ -0.211e-10■■■■■ 46.3
LSM11P83369 USP47-207ENST00000527733 4525 ntAPPRIS P3 TSL 1 (best) BASIC13.49□□□□□ -0.252e-20■■■■■ 46.3
LSM11P83369 HNRNPUL1-204ENST00000392006 3555 ntAPPRIS P2 TSL 1 (best) BASIC12.89□□□□□ -0.351e-10■■■■■ 46.3
LSM11P83369 HNRNPUL1-207ENST00000595018 2794 ntTSL 2 BASIC12.66□□□□□ -0.381e-10■■■■■ 46.3
LSM11P83369 PRDX1-202ENST00000319248 1021 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.471e-10■■■■■ 46.3
LSM11P83369 PRDX1-204ENST00000424390 795 ntTSL 212□□□□□ -0.491e-10■■■■■ 46.3
LSM11P83369 USP47-202ENST00000339865 7775 ntTSL 2 BASIC11.78□□□□□ -0.522e-20■■■■■ 46.3
LSM11P83369 PRDX1-203ENST00000372079 609 ntTSL 3 BASIC11.54□□□□□ -0.561e-10■■■■■ 46.3
LSM11P83369 FUBP3-202ENST00000465949 676 ntTSL 511.33□□□□□ -0.61e-10■■■■■ 46.3
LSM11P83369 HNRNPUL1-202ENST00000352456 3426 ntTSL 1 (best) BASIC11.27□□□□□ -0.611e-10■■■■■ 46.3
LSM11P83369 SMYD3-203ENST00000391836 732 ntTSL 510.16□□□□□ -0.781e-10■■■■■ 46.3
LSM11P83369 SMYD3-213ENST00000488153 653 ntTSL 37.68□□□□□ -1.181e-10■■■■■ 46.3
LSM11P83369 SMYD3-208ENST00000464398 540 ntTSL 37.31□□□□□ -1.241e-10■■■■■ 46.3
LSM11P83369 SMYD3-216ENST00000492487 634 ntTSL 37.31□□□□□ -1.241e-10■■■■■ 46.3
LSM11P83369 PRDX1-205ENST00000447184 606 ntTSL 57.1□□□□□ -1.271e-10■■■■■ 46.3
LSM11P83369 USP47-203ENST00000399455 7396 ntAPPRIS ALT2 TSL 5 BASIC6.87□□□□□ -1.312e-20■■■■■ 46.3
LSM11P83369 ETV7-201ENST00000339796 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC13.5□□□□□ -0.251e-7■■■■■ 46
LSM11P83369 ETV7-208ENST00000627426 1285 ntTSL 1 (best) BASIC9.72□□□□□ -0.851e-7■■■■■ 46
LSM11P83369 RRP1B-201ENST00000340648 5090 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.244e-7■■■■■ 45.4
LSM11P83369 UBE2E1-207ENST00000475680 1138 ntTSL 518.49■□□□□ 0.553e-7■■■■■ 45.2
LSM11P83369 UBE2E1-201ENST00000306627 1511 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.433e-7■■■■■ 45.2
LSM11P83369 UBE2E1-202ENST00000346855 1398 ntTSL 3 BASIC16.41■□□□□ 0.223e-7■■■■■ 45.2
LSM11P83369 UBE2E1-204ENST00000442670 622 ntTSL 214.48□□□□□ -0.093e-7■■■■■ 45.2
LSM11P83369 UBE2E1-211ENST00000495141 582 ntTSL 214.4□□□□□ -0.13e-7■■■■■ 45.2
LSM11P83369 UBE2E1-203ENST00000424381 1224 ntTSL 2 BASIC12.3□□□□□ -0.443e-7■■■■■ 45.2
LSM11P83369 UBE2E1-205ENST00000452012 1166 ntTSL 312.3□□□□□ -0.443e-7■■■■■ 45.2
LSM11P83369 UBE2E1-206ENST00000467766 585 ntTSL 2 BASIC11.15□□□□□ -0.623e-7■■■■■ 45.2
LSM11P83369 SCAF8-204ENST00000461219 677 ntTSL 517.85■□□□□ 0.456e-11■■■■■ 44.4
LSM11P83369 MAP1B-205ENST00000512974 580 ntTSL 417.66■□□□□ 0.423e-10■■■■■ 44.4
LSM11P83369 PSMD6-201ENST00000295901 1430 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.423e-10■■■■■ 44.4
LSM11P83369 AGPAT3-201ENST00000291572 5546 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.233e-10■■■■■ 44.4
LSM11P83369 AGPAT3-213ENST00000479117 1510 ntTSL 516.43■□□□□ 0.223e-10■■■■■ 44.4
LSM11P83369 CHCHD3-203ENST00000448878 1038 ntTSL 5 BASIC15.91■□□□□ 0.143e-10■■■■■ 44.4
LSM11P83369 PSMD6-206ENST00000476464 2052 ntTSL 215.55■□□□□ 0.083e-10■■■■■ 44.4
LSM11P83369 PSMD6-210ENST00000492933 1495 ntTSL 1 (best) BASIC15.48■□□□□ 0.073e-10■■■■■ 44.4
LSM11P83369 MAP1B-206ENST00000513526 2154 ntTSL 215.02■□□□□ -03e-10■■■■■ 44.4
LSM11P83369 CHCHD3-201ENST00000262570 1598 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.033e-10■■■■■ 44.4
LSM11P83369 CHCHD3-202ENST00000423635 1310 ntTSL 1 (best)14.81□□□□□ -0.043e-10■■■■■ 44.4
LSM11P83369 SCAF8-201ENST00000367178 5057 ntAPPRIS P1 TSL 2 BASIC14.65□□□□□ -0.066e-11■■■■■ 44.4
LSM11P83369 MAP1B-204ENST00000511641 2056 ntTSL 1 (best)14.56□□□□□ -0.083e-10■■■■■ 44.4
LSM11P83369 AGPAT3-218ENST00000546158 2199 ntAPPRIS P1 TSL 5 BASIC13.64□□□□□ -0.233e-10■■■■■ 44.4
LSM11P83369 AGPAT3-205ENST00000398063 5767 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.383e-10■■■■■ 44.4
LSM11P83369 AGPAT3-204ENST00000398061 3595 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.393e-10■■■■■ 44.4
LSM11P83369 AGPAT3-202ENST00000327505 3589 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.393e-10■■■■■ 44.4
LSM11P83369 PSMD6-209ENST00000482510 1176 ntTSL 5 BASIC11.42□□□□□ -0.583e-10■■■■■ 44.4
LSM11P83369 SCAF8-203ENST00000417268 4944 ntTSL 2 BASIC11.33□□□□□ -0.66e-11■■■■■ 44.4
LSM11P83369 DNM2-207ENST00000586939 551 ntTSL 411.2□□□□□ -0.623e-10■■■■■ 44.4
LSM11P83369 PSMD6-208ENST00000480205 657 ntTSL 311.08□□□□□ -0.643e-10■■■■■ 44.4
LSM11P83369 AGPAT3-203ENST00000398058 4338 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.643e-10■■■■■ 44.4
LSM11P83369 AGPAT3-215ENST00000484865 588 ntTSL 211.03□□□□□ -0.643e-10■■■■■ 44.4
LSM11P83369 PSMD6-202ENST00000394431 1349 ntTSL 1 (best) BASIC10.55□□□□□ -0.723e-10■■■■■ 44.4
LSM11P83369 SCAF8-205ENST00000464628 468 ntTSL 510.23□□□□□ -0.776e-11■■■■■ 44.4
LSM11P83369 CHCHD3-206ENST00000496427 721 ntTSL 59.82□□□□□ -0.843e-10■■■■■ 44.4
LSM11P83369 AGPAT3-211ENST00000467358 3955 ntTSL 29.68□□□□□ -0.863e-10■■■■■ 44.4
LSM11P83369 SCAF8-202ENST00000367186 4908 ntTSL 2 BASIC9.36□□□□□ -0.916e-11■■■■■ 44.4
LSM11P83369 GNB1-202ENST00000434686 684 ntTSL 39.22□□□□□ -0.933e-10■■■■■ 44.4
LSM11P83369 MAP1B-201ENST00000296755 12036 ntAPPRIS P1 TSL 1 (best) BASIC9.03□□□□□ -0.963e-10■■■■■ 44.4
LSM11P83369 GNB1-203ENST00000437146 423 ntTSL 38.41□□□□□ -1.063e-10■■■■■ 44.4
LSM11P83369 PSMD6-204ENST00000467853 4583 ntTSL 1 (best)5.89□□□□□ -1.473e-10■■■■■ 44.4
LSM11P83369 WDPCP-201ENST00000272321 3392 ntAPPRIS P3 TSL 1 (best) BASIC10.71□□□□□ -0.71e-8■■■■■ 44.2
LSM11P83369 WDPCP-206ENST00000409562 3544 ntAPPRIS ALT2 TSL 1 (best) BASIC8.38□□□□□ -1.071e-8■■■■■ 44.2
LSM11P83369 WDPCP-205ENST00000409354 2122 ntTSL 28.26□□□□□ -1.091e-8■■■■■ 44.2
LSM11P83369 WDPCP-202ENST00000398544 2063 ntAPPRIS ALT2 TSL 1 (best) BASIC7.09□□□□□ -1.271e-8■■■■■ 44.2
LSM11P83369 WDPCP-204ENST00000409199 2466 ntTSL 2 BASIC6.77□□□□□ -1.331e-8■■■■■ 44.2
LSM11P83369 WDPCP-203ENST00000409120 5408 ntTSL 1 (best) BASIC5.03□□□□□ -1.61e-8■■■■■ 44.2
LSM11P83369 ARFRP1-204ENST00000609537 593 ntTSL 312.4□□□□□ -0.429e-8■■■■■ 43.9
Retrieved 100 of 11,495 protein–RNA pairs in 147.5 ms