RNA–Protein interactions for RNA: ENST00000399455.2

USP47-203, Transcript of ubiquitin specific peptidase 47, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene USP47, Length 7,396 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP47-203ENST00000399455 DCAF8L2P0C7V8 631 aa14.25□□□□□ -0.13
USP47-203ENST00000399455 NISCHQ9Y2I1 1504 aa13.67□□□□□ -0.22
USP47-203ENST00000399455 FAM9AQ8IZU1 332 aaPredicted RBP13.14□□□□□ -0.31
USP47-203ENST00000399455 SUPT5HO00267 1087 aaKnown RBP12.95□□□□□ -0.34
USP47-203ENST00000399455 SHROOM4Q9ULL8 1493 aa12.88□□□□□ -0.35
USP47-203ENST00000399455 APLP2Q06481 763 aa12.72□□□□□ -0.37
USP47-203ENST00000399455 EHMT2Q96KQ7 1210 aa12.51□□□□□ -0.41
USP47-203ENST00000399455 ATP1B4Q9UN42 357 aaPredicted RBP12.35□□□□□ -0.43
USP47-203ENST00000399455 RANGAP1P46060 587 aaPredicted RBP12.23□□□□□ -0.45
USP47-203ENST00000399455 MYT1LQ9UL68 1186 aa12.2□□□□□ -0.46
USP47-203ENST00000399455 ABCC9O60706 1549 aa12.18□□□□□ -0.46
USP47-203ENST00000399455 TRIM41Q8WV44 630 aa12.17□□□□□ -0.46
USP47-203ENST00000399455 UBTFP17480 764 aaKnown RBP12.12□□□□□ -0.47
USP47-203ENST00000399455 PELP1Q8IZL8 1130 aaKnown RBP12.12□□□□□ -0.47
USP47-203ENST00000399455 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.07□□□□□ -0.48
USP47-203ENST00000399455 HNRNPUL2Q1KMD3 747 aaKnown RBP12.07□□□□□ -0.48
USP47-203ENST00000399455 TTBK1Q5TCY1 1321 aaPredicted RBP12.04□□□□□ -0.48
USP47-203ENST00000399455 PABPN1Q86U42 306 aaKnown RBP eCLIP11.96□□□□□ -0.5
USP47-203ENST00000399455 CHIC1Q5VXU3 224 aa11.77□□□□□ -0.52
USP47-203ENST00000399455 FBLN2P98095 1184 aa11.76□□□□□ -0.53
USP47-203ENST00000399455 PCGF6Q9BYE7 350 aa11.73□□□□□ -0.53
USP47-203ENST00000399455 CCER1Q8TC90 406 aaPredicted RBP11.72□□□□□ -0.53
USP47-203ENST00000399455 ZEB1P37275 1124 aaPredicted RBP11.69□□□□□ -0.54
USP47-203ENST00000399455 CCDC180Q9P1Z9 1646 aa11.67□□□□□ -0.54
USP47-203ENST00000399455 SLC4A1APQ9BWU0 796 aaKnown RBP11.62□□□□□ -0.55
USP47-203ENST00000399455 RB1CC1Q8TDY2 1594 aa11.6□□□□□ -0.55
USP47-203ENST00000399455 NPM1P06748 294 aaKnown RBP eCLIP11.6□□□□□ -0.55
USP47-203ENST00000399455 ITGAEP38570 1179 aa11.59□□□□□ -0.55
USP47-203ENST00000399455 ESF1Q9H501 851 aaKnown RBP11.59□□□□□ -0.55
USP47-203ENST00000399455 SCRIBQ14160 1630 aa11.55□□□□□ -0.56
USP47-203ENST00000399455 POLR3GLQ9BT43 218 aa11.55□□□□□ -0.56
USP47-203ENST00000399455 BCANQ96GW7 911 aa11.54□□□□□ -0.56
USP47-203ENST00000399455 NEFLP07196 543 aa11.49□□□□□ -0.57
USP47-203ENST00000399455 ERICH6Q7L0X2 663 aa11.48□□□□□ -0.57
USP47-203ENST00000399455 CENPBP07199 599 aaPredicted RBP11.46□□□□□ -0.57
USP47-203ENST00000399455 FAM50AQ14320 339 aaKnown RBP11.46□□□□□ -0.57
USP47-203ENST00000399455 CDK11AQ9UQ88 783 aaPredicted RBP11.44□□□□□ -0.58
USP47-203ENST00000399455 TRIM52Q96A61 297 aa11.44□□□□□ -0.58
USP47-203ENST00000399455 PPARGC1BQ86YN6 1023 aaKnown RBP11.39□□□□□ -0.59
USP47-203ENST00000399455 ERCC6Q03468 1493 aa11.36□□□□□ -0.59
USP47-203ENST00000399455 NACADO15069 1562 aa11.36□□□□□ -0.59
USP47-203ENST00000399455 STAG3Q9UJ98 1225 aa11.36□□□□□ -0.59
USP47-203ENST00000399455 PLPPR3Q6T4P5 718 aa11.31□□□□□ -0.6
USP47-203ENST00000399455 CHMP7Q8WUX9 453 aaPredicted RBP11.31□□□□□ -0.6
USP47-203ENST00000399455 TRIM26Q12899 539 aaPredicted RBP11.29□□□□□ -0.6
USP47-203ENST00000399455 ZNF777Q9ULD5 760 aaPredicted RBP11.28□□□□□ -0.6
USP47-203ENST00000399455 NEFMP07197 916 aa11.28□□□□□ -0.6
USP47-203ENST00000399455 ARID3CA6NKF2 412 aa11.25□□□□□ -0.61
USP47-203ENST00000399455 DAXXQ9UER7 740 aaPredicted RBP11.25□□□□□ -0.61
USP47-203ENST00000399455 ZCCHC6Q5VYS8 1495 aaKnown RBP11.25□□□□□ -0.61
USP47-203ENST00000399455 SLC24A1O60721 1099 aa11.24□□□□□ -0.61
USP47-203ENST00000399455 P3H3Q8IVL6 736 aa11.23□□□□□ -0.61
USP47-203ENST00000399455 CNGB1Q14028 1251 aaPredicted RBP11.22□□□□□ -0.61
USP47-203ENST00000399455 ZNF326Q5BKZ1 582 aaKnown RBP11.2□□□□□ -0.62
USP47-203ENST00000399455 ZBTB47Q9UFB7 747 aaPredicted RBP11.18□□□□□ -0.62
USP47-203ENST00000399455 CHGAP10645 457 aaKnown RBP11.16□□□□□ -0.62
USP47-203ENST00000399455 BAZ1BQ9UIG0 1483 aaKnown RBP11.16□□□□□ -0.62
USP47-203ENST00000399455 YTHDC1Q96MU7 727 aaKnown RBP11.15□□□□□ -0.62
USP47-203ENST00000399455 ARID4BQ4LE39 1312 aaPredicted RBP11.13□□□□□ -0.63
USP47-203ENST00000399455 NEUROD1Q13562 356 aa11.12□□□□□ -0.63
USP47-203ENST00000399455 LOC105371045A0A1W2PR82 267 aa11.12□□□□□ -0.63
USP47-203ENST00000399455 TRHP20396 242 aaPredicted RBP11.11□□□□□ -0.63
USP47-203ENST00000399455 CSRNP3Q8WYN3 585 aa11.11□□□□□ -0.63
USP47-203ENST00000399455 CLSPNQ9HAW4 1339 aa11.07□□□□□ -0.64
USP47-203ENST00000399455 SCAF1Q9H7N4 1312 aaKnown RBP11.07□□□□□ -0.64
USP47-203ENST00000399455 TSPY4P0CV99 314 aa11.04□□□□□ -0.64
USP47-203ENST00000399455 TSPY10P0CW01 314 aa11.04□□□□□ -0.64
USP47-203ENST00000399455 C14orf37Q86TY3 774 aa11.04□□□□□ -0.64
USP47-203ENST00000399455 PPP1R15AO75807 674 aaPredicted RBP11.04□□□□□ -0.64
USP47-203ENST00000399455 CANXP27824 592 aaKnown RBP11.01□□□□□ -0.65
USP47-203ENST00000399455 GRWD1Q9BQ67 446 aaKnown RBP eCLIP11.01□□□□□ -0.658e-7■□□□□ 9
USP47-203ENST00000399455 KCNH8Q96L42 1107 aa11□□□□□ -0.65
USP47-203ENST00000399455 PLEKHD1A6NEE1 506 aa11□□□□□ -0.65
USP47-203ENST00000399455 HAP1P54257 671 aaPredicted RBP10.99□□□□□ -0.65
USP47-203ENST00000399455 MTUS2Q5JR59 1369 aa10.96□□□□□ -0.65
USP47-203ENST00000399455 RSF1Q96T23 1441 aaPredicted RBP10.96□□□□□ -0.66
USP47-203ENST00000399455 ZNF316A6NFI3 1004 aaPredicted RBP10.96□□□□□ -0.66
USP47-203ENST00000399455 ANP32CO43423 234 aa10.95□□□□□ -0.66
USP47-203ENST00000399455 ACIN1Q9UKV3 1341 aaKnown RBP10.95□□□□□ -0.66
USP47-203ENST00000399455 PDS5BQ9NTI5 1447 aa10.94□□□□□ -0.66
USP47-203ENST00000399455 BAZ1AQ9NRL2 1556 aaPredicted RBP10.94□□□□□ -0.66
USP47-203ENST00000399455 A0A0G2JS52 829 aa10.94□□□□□ -0.66
USP47-203ENST00000399455 NPM2Q86SE8 214 aaKnown RBP10.93□□□□□ -0.66
USP47-203ENST00000399455 SMARCA2P51531 1590 aa10.92□□□□□ -0.66
USP47-203ENST00000399455 KIF27Q86VH2 1401 aa10.89□□□□□ -0.67
USP47-203ENST00000399455 ZBTB7CA1YPR0 619 aa10.87□□□□□ -0.67
USP47-203ENST00000399455 HDGFP51858 240 aaKnown RBP10.87□□□□□ -0.67
USP47-203ENST00000399455 TONSLQ96HA7 1378 aa10.86□□□□□ -0.67
USP47-203ENST00000399455 EIF4G1Q04637 1599 aaKnown RBP10.86□□□□□ -0.67
USP47-203ENST00000399455 AEBP2Q6ZN18 517 aaPredicted RBP10.85□□□□□ -0.67
USP47-203ENST00000399455 DCAF1Q9Y4B6 1507 aa10.84□□□□□ -0.67
USP47-203ENST00000399455 CLIP1P30622 1438 aa10.84□□□□□ -0.67
USP47-203ENST00000399455 EEA1Q15075 1411 aa10.83□□□□□ -0.68
USP47-203ENST00000399455 CECR2Q9BXF3 1484 aa10.83□□□□□ -0.68
USP47-203ENST00000399455 WRNQ14191 1432 aaPredicted RBP eCLIP10.83□□□□□ -0.68
USP47-203ENST00000399455 CHIC2Q9UKJ5 165 aa10.83□□□□□ -0.68
USP47-203ENST00000399455 KANK1Q14678 1352 aa10.82□□□□□ -0.68
USP47-203ENST00000399455 CARMIL2Q6F5E8 1435 aa10.81□□□□□ -0.68
USP47-203ENST00000399455 HRCP23327 699 aa10.81□□□□□ -0.68
USP47-203ENST00000399455 BCL11AQ9H165 835 aa10.79□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms