Protein–RNA interactions for Protein: O95477

ABCA1, ATP-binding cassette sub-family A member 1, humanhuman

Predictions only

Length 2,261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA1O95477 HSD17B1P1-201ENST00000590052 955 ntBASIC22.38■■□□□ 1.17
ABCA1O95477 DPP6-204ENST00000406326 2012 ntTSL 1 (best) BASIC22.38■■□□□ 1.17
ABCA1O95477 CHMP4B-201ENST00000217402 1646 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
ABCA1O95477 HDAC3-201ENST00000305264 1959 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
ABCA1O95477 DUSP14-206ENST00000617516 1537 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
ABCA1O95477 AC016575.1-201ENST00000607026 382 ntBASIC22.37■■□□□ 1.17
ABCA1O95477 RASGEF1C-207ENST00000615330 2268 ntTSL 5 BASIC22.36■■□□□ 1.17
ABCA1O95477 C16orf95-205ENST00000567970 1031 ntAPPRIS ALT2 TSL 5 BASIC22.35■■□□□ 1.17
ABCA1O95477 ECI1-207ENST00000570258 1512 ntAPPRIS ALT2 TSL 5 BASIC22.35■■□□□ 1.17
ABCA1O95477 CR559946.2-201ENST00000623684 991 ntBASIC22.34■■□□□ 1.17
ABCA1O95477 AL118558.1-203ENST00000553701 447 ntTSL 3 BASIC22.34■■□□□ 1.17
ABCA1O95477 TXNL4A-210ENST00000591711 669 ntTSL 2 BASIC22.34■■□□□ 1.17
ABCA1O95477 TRIM52-AS1-203ENST00000509252 529 ntTSL 3 BASIC22.33■■□□□ 1.16
ABCA1O95477 GDI1-215ENST00000630693 786 ntTSL 4 BASIC22.33■■□□□ 1.16
ABCA1O95477 CLEC3B-202ENST00000428034 752 ntTSL 2 BASIC22.32■■□□□ 1.16
ABCA1O95477 AC108673.1-201ENST00000510422 1159 ntBASIC22.32■■□□□ 1.16
ABCA1O95477 SIAH1-203ENST00000394725 2147 ntAPPRIS P3 TSL 1 (best) BASIC22.31■■□□□ 1.16
ABCA1O95477 CLDND1-226ENST00000513287 999 ntAPPRIS P1 TSL 2 BASIC22.31■■□□□ 1.16
ABCA1O95477 CIB2-204ENST00000557846 934 ntTSL 3 BASIC22.31■■□□□ 1.16
ABCA1O95477 RCE1-201ENST00000309657 1485 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
ABCA1O95477 CTDNEP1-210ENST00000574322 1708 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
ABCA1O95477 MRPL9-201ENST00000368829 882 ntAPPRIS ALT2 TSL 2 BASIC22.3■■□□□ 1.16
ABCA1O95477 AL589765.4-201ENST00000512280 382 ntTSL 3 BASIC22.3■■□□□ 1.16
ABCA1O95477 VEGFA-226ENST00000611736 1239 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
ABCA1O95477 MISP3-202ENST00000587086 1535 ntAPPRIS P2 TSL 1 (best) BASIC22.28■■□□□ 1.16
ABCA1O95477 STUB1-201ENST00000219548 1472 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
ABCA1O95477 HSD17B1-201ENST00000225929 1265 ntAPPRIS ALT2 TSL 2 BASIC22.28■■□□□ 1.16
ABCA1O95477 P2RX2-203ENST00000350048 1344 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
ABCA1O95477 SDCCAG3-204ENST00000371725 2129 ntAPPRIS ALT2 TSL 5 BASIC22.28■■□□□ 1.16
ABCA1O95477 CHST12-204ENST00000618655 2131 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
ABCA1O95477 SH3GLB2-201ENST00000372554 1985 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
ABCA1O95477 CGREF1-204ENST00000402550 1575 ntTSL 2 BASIC22.28■■□□□ 1.16
ABCA1O95477 SERINC2-201ENST00000373709 1997 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
ABCA1O95477 U2AF1-201ENST00000291552 962 ntAPPRIS P3 TSL 1 (best) BASIC22.27■■□□□ 1.16
ABCA1O95477 U2AF1L5-202ENST00000619610 813 ntAPPRIS ALT2 TSL 1 (best) BASIC22.27■■□□□ 1.16
ABCA1O95477 RNF150-204ENST00000507500 1530 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
ABCA1O95477 RNF166-209ENST00000567844 633 ntTSL 5 BASIC22.27■■□□□ 1.16
ABCA1O95477 MTCP1-202ENST00000369476 2274 ntAPPRIS P1 TSL 3 BASIC22.26■■□□□ 1.15
ABCA1O95477 RBPMS-209ENST00000520161 842 ntTSL 2 BASIC22.25■■□□□ 1.15
ABCA1O95477 MIR6090-201ENST00000622481 60 ntBASIC22.25■■□□□ 1.15
ABCA1O95477 CBX4-201ENST00000269397 2664 ntAPPRIS P2 TSL 1 (best) BASIC22.25■■□□□ 1.15
ABCA1O95477 LINC01971-201ENST00000617888 1048 ntBASIC22.24■■□□□ 1.15
ABCA1O95477 IFNGR2-201ENST00000290219 2221 ntAPPRIS P3 TSL 1 (best) BASIC22.23■■□□□ 1.15
ABCA1O95477 EIF5A-208ENST00000573542 1089 ntAPPRIS P1 TSL 2 BASIC22.23■■□□□ 1.15
ABCA1O95477 DTNBP1-212ENST00000622898 1305 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
ABCA1O95477 AP000547.3-202ENST00000592107 1019 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
ABCA1O95477 DEXI-201ENST00000331808 1561 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
ABCA1O95477 TFEB-204ENST00000373033 2331 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
ABCA1O95477 IL1R1-201ENST00000409288 1735 ntTSL 5 BASIC22.22■■□□□ 1.15
ABCA1O95477 CGREF1-202ENST00000312734 1610 ntAPPRIS P2 TSL 5 BASIC22.22■■□□□ 1.15
ABCA1O95477 RNF130-201ENST00000261947 1766 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
ABCA1O95477 DOCK5-202ENST00000410074 786 ntTSL 2 BASIC22.2■■□□□ 1.14
ABCA1O95477 DUX4L11-201ENST00000611504 1267 ntBASIC22.19■■□□□ 1.14
ABCA1O95477 DUX4L12-201ENST00000614593 1267 ntBASIC22.19■■□□□ 1.14
ABCA1O95477 DUX4L14-201ENST00000621227 1267 ntBASIC22.19■■□□□ 1.14
ABCA1O95477 GNPTAB-206ENST00000549940 1678 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
ABCA1O95477 ACTR3B-202ENST00000377776 1566 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
ABCA1O95477 PRKAR1B-201ENST00000360274 2007 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
ABCA1O95477 BRF1-221ENST00000619151 1530 ntTSL 5 BASIC22.18■■□□□ 1.14
ABCA1O95477 UBE2L6-201ENST00000287156 1354 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
ABCA1O95477 PRSS41-201ENST00000399677 1127 ntAPPRIS P1 TSL 5 BASIC22.17■■□□□ 1.14
ABCA1O95477 ING2-201ENST00000302327 1189 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
ABCA1O95477 AURKAIP1-203ENST00000338370 1072 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
ABCA1O95477 UBE2S-203ENST00000589978 496 ntTSL 5 BASIC22.17■■□□□ 1.14
ABCA1O95477 PARD6A-201ENST00000219255 1248 ntAPPRIS P3 TSL 1 (best) BASIC22.16■■□□□ 1.14
ABCA1O95477 CIB1-201ENST00000328649 1247 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
ABCA1O95477 AC018755.3-201ENST00000598755 664 ntTSL 2 BASIC22.16■■□□□ 1.14
ABCA1O95477 CIB1-202ENST00000612800 1096 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
ABCA1O95477 MAD2L2-207ENST00000376692 1118 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
ABCA1O95477 U2AF1L5-201ENST00000610664 897 ntAPPRIS P5 TSL 1 (best) BASIC22.15■■□□□ 1.14
ABCA1O95477 PLEKHJ1-201ENST00000326631 1206 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
ABCA1O95477 FAAP20-202ENST00000378546 729 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
ABCA1O95477 AL139393.1-201ENST00000417479 573 ntTSL 5 BASIC22.15■■□□□ 1.14
ABCA1O95477 SCX-201ENST00000567180 999 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
ABCA1O95477 BRD4-212ENST00000630599 726 ntTSL 2 BASIC22.15■■□□□ 1.14
ABCA1O95477 CERS2-201ENST00000271688 2544 ntAPPRIS P1 TSL 5 BASIC22.15■■□□□ 1.14
ABCA1O95477 BCL7B-202ENST00000411832 1458 ntTSL 2 BASIC22.14■■□□□ 1.14
ABCA1O95477 STARD10-220ENST00000545082 1085 ntTSL 3 BASIC22.14■■□□□ 1.14
ABCA1O95477 SCARA3-202ENST00000337221 1910 ntTSL 1 (best) BASIC22.14■■□□□ 1.14
ABCA1O95477 CCZ1-201ENST00000325974 1802 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.14
ABCA1O95477 CPNE1-203ENST00000397442 1695 ntTSL 5 BASIC22.14■■□□□ 1.13
ABCA1O95477 PPP4R4-202ENST00000328839 876 ntTSL 1 (best) BASIC22.14■■□□□ 1.13
ABCA1O95477 PTPRF-216ENST00000617451 1129 ntTSL 5 BASIC22.14■■□□□ 1.13
ABCA1O95477 SLC9A3R2-202ENST00000432365 1564 ntTSL 1 (best) BASIC22.14■■□□□ 1.13
ABCA1O95477 VEGFA-208ENST00000417285 1081 ntAPPRIS ALT2 TSL 1 (best) BASIC22.13■■□□□ 1.13
ABCA1O95477 CTDNEP1-201ENST00000318988 1549 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
ABCA1O95477 SLC35D2-203ENST00000375259 1361 ntTSL 1 (best) BASIC22.13■■□□□ 1.13
ABCA1O95477 RRAD-202ENST00000420652 1476 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
ABCA1O95477 ABHD17A-201ENST00000250974 1630 ntTSL 1 (best) BASIC22.12■■□□□ 1.13
ABCA1O95477 MRPL51-201ENST00000229238 1234 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
ABCA1O95477 AC007383.2-202ENST00000435627 482 ntTSL 2 BASIC22.11■■□□□ 1.13
ABCA1O95477 TMEM80-202ENST00000397512 1572 ntAPPRIS ALT2 TSL 1 (best) BASIC22.11■■□□□ 1.13
ABCA1O95477 FAM78B-202ENST00000354422 1475 ntAPPRIS P1 TSL 2 BASIC22.11■■□□□ 1.13
ABCA1O95477 CSPG5-205ENST00000610462 2073 ntTSL 5 BASIC22.1■■□□□ 1.13
ABCA1O95477 TWIST1-201ENST00000242261 1666 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
ABCA1O95477 AC012615.2-201ENST00000586259 447 ntTSL 4 BASIC22.09■■□□□ 1.13
ABCA1O95477 GALK1-205ENST00000588479 1866 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.13
ABCA1O95477 QDPR-201ENST00000281243 1648 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.13
ABCA1O95477 ABHD17AP3-201ENST00000503096 1137 ntBASIC22.08■■□□□ 1.13
ABCA1O95477 C5orf66-AS1-201ENST00000507035 843 ntTSL 2 BASIC22.08■■□□□ 1.13
Retrieved 100 of 98,524 protein–RNA pairs in 8.3 ms