Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 NPLOC4-201ENST00000331134 4415 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CHMP1AQ9HD42 TLE3-216ENST00000559191 1575 ntTSL 5 BASIC18■□□□□ 0.47
CHMP1AQ9HD42 OXCT2-201ENST00000327582 1826 ntAPPRIS P1 BASIC18■□□□□ 0.47
CHMP1AQ9HD42 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CHMP1AQ9HD42 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC18■□□□□ 0.47
CHMP1AQ9HD42 JADE2-204ENST00000402835 2797 ntTSL 5 BASIC18■□□□□ 0.47
CHMP1AQ9HD42 PFKFB3-216ENST00000625260 1752 ntAPPRIS ALT1 TSL 5 BASIC18■□□□□ 0.47
CHMP1AQ9HD42 KLF16-201ENST00000250916 2890 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CHMP1AQ9HD42 GPSM1-201ENST00000291775 2114 ntTSL 1 (best) BASIC18■□□□□ 0.47
CHMP1AQ9HD42 IGFBP3-202ENST00000381083 1050 ntAPPRIS ALT1 TSL 5 BASIC18■□□□□ 0.47
CHMP1AQ9HD42 NDUFAF8-201ENST00000431388 615 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CHMP1AQ9HD42 AL117336.3-202ENST00000605499 489 ntTSL 3 BASIC18■□□□□ 0.47
CHMP1AQ9HD42 MAFG-201ENST00000357736 5040 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CHMP1AQ9HD42 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC18■□□□□ 0.47
CHMP1AQ9HD42 PLCG1-202ENST00000373271 7395 ntAPPRIS ALT1 TSL 1 (best) BASIC18■□□□□ 0.47
CHMP1AQ9HD42 STRN4-202ENST00000391910 3628 ntAPPRIS ALT1 TSL 5 BASIC18■□□□□ 0.47
CHMP1AQ9HD42 AGAP5-203ENST00000581191 2779 ntAPPRIS ALT2 TSL 5 BASIC18■□□□□ 0.47
CHMP1AQ9HD42 PDLIM3-203ENST00000284771 1672 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
CHMP1AQ9HD42 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC17.99■□□□□ 0.47
CHMP1AQ9HD42 SMIM11B-205ENST00000624304 1863 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
CHMP1AQ9HD42 IMPA2-201ENST00000269159 1534 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
CHMP1AQ9HD42 ST3GAL3-207ENST00000353126 1969 ntTSL 5 BASIC17.99■□□□□ 0.47
CHMP1AQ9HD42 KLHL17-205ENST00000622660 1950 ntTSL 5 BASIC17.99■□□□□ 0.47
CHMP1AQ9HD42 RAX-202ENST00000334889 3197 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
CHMP1AQ9HD42 SNX7-201ENST00000306121 1734 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
CHMP1AQ9HD42 PEMT-202ENST00000395781 1050 ntTSL 2 BASIC17.99■□□□□ 0.47
CHMP1AQ9HD42 OR2I1P-207ENST00000453522 948 ntBASIC17.99■□□□□ 0.47
CHMP1AQ9HD42 AC010141.3-201ENST00000456659 717 ntBASIC17.99■□□□□ 0.47
CHMP1AQ9HD42 CCDC189-211ENST00000545825 1046 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
CHMP1AQ9HD42 OSR1-201ENST00000272223 1936 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
CHMP1AQ9HD42 ECHDC1-203ENST00000368291 1354 ntTSL 2 BASIC17.99■□□□□ 0.47
CHMP1AQ9HD42 UBR3-203ENST00000418381 7951 ntAPPRIS P1 TSL 5 BASIC17.99■□□□□ 0.47
CHMP1AQ9HD42 RAP1B-204ENST00000393436 2049 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
CHMP1AQ9HD42 PXK-211ENST00000484288 2031 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
CHMP1AQ9HD42 AGAP4-207ENST00000616763 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC17.99■□□□□ 0.47
CHMP1AQ9HD42 PRSS33-202ENST00000570702 1676 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
CHMP1AQ9HD42 XBP1-207ENST00000611155 1794 ntTSL 5 BASIC17.99■□□□□ 0.47
CHMP1AQ9HD42 GDF7-201ENST00000272224 9749 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
CHMP1AQ9HD42 C10orf55-202ENST00000412307 2360 ntAPPRIS P1 TSL 5 BASIC17.98■□□□□ 0.47
CHMP1AQ9HD42 TIMM50-201ENST00000314349 1612 ntAPPRIS P2 TSL 1 (best) BASIC17.98■□□□□ 0.47
CHMP1AQ9HD42 CACNA1A-247ENST00000637769 8648 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
CHMP1AQ9HD42 HMOX1-201ENST00000216117 1822 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
CHMP1AQ9HD42 RIOX2-201ENST00000333396 5347 ntAPPRIS ALT1 TSL 1 (best) BASIC17.98■□□□□ 0.47
CHMP1AQ9HD42 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
CHMP1AQ9HD42 PRKCI-201ENST00000295797 4950 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
CHMP1AQ9HD42 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
CHMP1AQ9HD42 AL122058.1-201ENST00000412321 1166 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
CHMP1AQ9HD42 ZNF302-211ENST00000509528 577 ntTSL 4 BASIC17.98■□□□□ 0.47
CHMP1AQ9HD42 MIR3621-201ENST00000580529 85 ntBASIC17.98■□□□□ 0.47
CHMP1AQ9HD42 AF117829.1-201ENST00000519655 1398 ntTSL 5 BASIC17.98■□□□□ 0.47
CHMP1AQ9HD42 SYNM-202ENST00000336292 7394 ntAPPRIS P4 TSL 1 (best) BASIC17.98■□□□□ 0.47
CHMP1AQ9HD42 MFSD7-209ENST00000515118 1556 ntTSL 5 BASIC17.98■□□□□ 0.47
CHMP1AQ9HD42 FRRS1L-201ENST00000561981 8197 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
CHMP1AQ9HD42 B3GALT4-204ENST00000451237 1694 ntAPPRIS P1 BASIC17.98■□□□□ 0.47
CHMP1AQ9HD42 CCNL1-203ENST00000461804 1998 ntTSL 2 BASIC17.98■□□□□ 0.47
CHMP1AQ9HD42 CDKN2C-203ENST00000396148 2086 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
CHMP1AQ9HD42 AC009041.2-204ENST00000568394 3343 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
CHMP1AQ9HD42 CYP2A7-201ENST00000291764 2128 ntTSL 5 BASIC17.98■□□□□ 0.47
CHMP1AQ9HD42 AC026471.6-201ENST00000622954 1905 ntBASIC17.98■□□□□ 0.47
CHMP1AQ9HD42 LMAN2-201ENST00000303127 1800 ntAPPRIS P2 TSL 1 (best) BASIC17.98■□□□□ 0.47
CHMP1AQ9HD42 SYDE2-202ENST00000341460 5512 ntAPPRIS P1 TSL 5 BASIC17.97■□□□□ 0.47
CHMP1AQ9HD42 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC17.97■□□□□ 0.47
CHMP1AQ9HD42 AC009506.1-201ENST00000418474 1494 ntTSL 2 BASIC17.97■□□□□ 0.47
CHMP1AQ9HD42 IQCJ-SCHIP1-204ENST00000485419 2445 ntAPPRIS ALT2 TSL 2 BASIC17.97■□□□□ 0.47
CHMP1AQ9HD42 ARMC9-201ENST00000349938 2300 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
CHMP1AQ9HD42 TPST1-201ENST00000304842 2116 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
CHMP1AQ9HD42 PABPN1-207ENST00000556821 1220 ntTSL 2 BASIC17.97■□□□□ 0.47
CHMP1AQ9HD42 LY6H-205ENST00000615409 980 ntAPPRIS P3 TSL 1 (best) BASIC17.97■□□□□ 0.47
CHMP1AQ9HD42 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC17.97■□□□□ 0.47
CHMP1AQ9HD42 ASCL5-201ENST00000449188 2026 ntAPPRIS P1 TSL 3 BASIC17.97■□□□□ 0.47
CHMP1AQ9HD42 PAQR6-213ENST00000612424 2037 ntTSL 2 BASIC17.97■□□□□ 0.47
CHMP1AQ9HD42 SCRN2-212ENST00000584123 1745 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
CHMP1AQ9HD42 SNUPN-201ENST00000308588 1513 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
CHMP1AQ9HD42 ELL2-201ENST00000237853 6046 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
CHMP1AQ9HD42 MTMR14-206ENST00000420925 1427 ntAPPRIS ALT2 TSL 2 BASIC17.97■□□□□ 0.47
CHMP1AQ9HD42 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
CHMP1AQ9HD42 SLC35A3-208ENST00000638336 2438 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
CHMP1AQ9HD42 TBL1Y-201ENST00000346432 2312 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
CHMP1AQ9HD42 CHST11-205ENST00000549260 5696 ntAPPRIS ALT1 TSL 1 (best) BASIC17.96■□□□□ 0.47
CHMP1AQ9HD42 FBXL14-201ENST00000339235 2111 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
CHMP1AQ9HD42 BCR-201ENST00000305877 7082 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
CHMP1AQ9HD42 ADAP2-204ENST00000580525 1598 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.47
CHMP1AQ9HD42 C4orf32-201ENST00000309733 8901 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
CHMP1AQ9HD42 ACYP2-202ENST00000394666 993 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
CHMP1AQ9HD42 GUSBP5-201ENST00000418136 578 ntBASIC17.96■□□□□ 0.47
CHMP1AQ9HD42 CDKN2A-208ENST00000498124 880 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
CHMP1AQ9HD42 GRAMD1B-217ENST00000640939 1212 ntTSL 5 BASIC17.96■□□□□ 0.47
CHMP1AQ9HD42 LTBP4-201ENST00000204005 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.47
CHMP1AQ9HD42 AF106564.1-201ENST00000607058 2553 ntBASIC17.96■□□□□ 0.47
CHMP1AQ9HD42 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC17.96■□□□□ 0.47
CHMP1AQ9HD42 CLIP2-202ENST00000361545 5445 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
CHMP1AQ9HD42 SLC46A3-202ENST00000380814 2121 ntAPPRIS ALT1 TSL 1 (best) BASIC17.96■□□□□ 0.47
CHMP1AQ9HD42 INTS11-208ENST00000435064 2148 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
CHMP1AQ9HD42 KCTD13-202ENST00000561540 1773 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
CHMP1AQ9HD42 HOMER3-203ENST00000433218 1418 ntAPPRIS ALT1 TSL 5 BASIC17.96■□□□□ 0.47
CHMP1AQ9HD42 TMEM5-201ENST00000261234 1918 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
CHMP1AQ9HD42 C2CD4B-201ENST00000380392 1579 ntAPPRIS P1 TSL 2 BASIC17.96■□□□□ 0.46
CHMP1AQ9HD42 PIAS2-203ENST00000545673 1590 ntTSL 2 BASIC17.96■□□□□ 0.46
CHMP1AQ9HD42 UBP1-202ENST00000283629 4148 ntAPPRIS P3 TSL 1 (best) BASIC17.96■□□□□ 0.46
CHMP1AQ9HD42 WNT10B-202ENST00000403957 1817 ntTSL 5 BASIC17.95■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 28.5 ms