Protein–RNA interactions for Protein: Q9H9S3

SEC61A2, Protein transport protein Sec61 subunit alpha isoform 2, humanhuman

Predictions only

Length 476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SEC61A2Q9H9S3 GDNF-204ENST00000427982 856 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
SEC61A2Q9H9S3 YBX1P1-201ENST00000445822 960 ntBASIC18.8■□□□□ 0.6
SEC61A2Q9H9S3 PLD4-205ENST00000553861 667 ntTSL 2 BASIC18.8■□□□□ 0.6
SEC61A2Q9H9S3 Z97653.1-201ENST00000567096 446 ntTSL 3 BASIC18.8■□□□□ 0.6
SEC61A2Q9H9S3 PSIP1-201ENST00000380715 1966 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
SEC61A2Q9H9S3 GCH1-202ENST00000395514 1977 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SEC61A2Q9H9S3 GALK1-201ENST00000225614 1445 ntAPPRIS P1 TSL 2 BASIC18.8■□□□□ 0.6
SEC61A2Q9H9S3 AC009237.3-201ENST00000393279 1427 ntBASIC18.8■□□□□ 0.6
SEC61A2Q9H9S3 CBWD6-201ENST00000377391 1792 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SEC61A2Q9H9S3 C2CD2-202ENST00000380486 6345 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SEC61A2Q9H9S3 LPCAT4-201ENST00000314891 2262 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SEC61A2Q9H9S3 SNX7-201ENST00000306121 1734 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SEC61A2Q9H9S3 FAM193B-217ENST00000514747 2913 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
SEC61A2Q9H9S3 RANBP10-202ENST00000448631 2232 ntTSL 2 BASIC18.8■□□□□ 0.6
SEC61A2Q9H9S3 FBXO25-203ENST00000352684 2360 ntTSL 5 BASIC18.79■□□□□ 0.6
SEC61A2Q9H9S3 SEC61A2-205ENST00000379033 2462 ntTSL 2 BASIC18.79■□□□□ 0.6
SEC61A2Q9H9S3 CENPS-CORT-201ENST00000400900 1469 ntTSL 2 BASIC18.79■□□□□ 0.6
SEC61A2Q9H9S3 CDKN2C-203ENST00000396148 2086 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SEC61A2Q9H9S3 HACD1-201ENST00000326961 773 ntTSL 2 BASIC18.79■□□□□ 0.6
SEC61A2Q9H9S3 PRKCQ-AS1-202ENST00000445427 1133 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
SEC61A2Q9H9S3 AL355877.1-204ENST00000451482 1078 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
SEC61A2Q9H9S3 AC009126.1-201ENST00000501338 2245 ntTSL 2 BASIC18.79■□□□□ 0.6
SEC61A2Q9H9S3 LOXL1-201ENST00000261921 2351 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SEC61A2Q9H9S3 HCG18-235ENST00000426882 4862 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
SEC61A2Q9H9S3 C7orf25-201ENST00000350427 2451 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
SEC61A2Q9H9S3 BX005040.4-201ENST00000637145 1518 ntBASIC18.79■□□□□ 0.6
SEC61A2Q9H9S3 C16orf59-201ENST00000361837 1662 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
SEC61A2Q9H9S3 SPRTN-201ENST00000008440 1667 ntTSL 2 BASIC18.79■□□□□ 0.6
SEC61A2Q9H9S3 SP9-201ENST00000394967 2554 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
SEC61A2Q9H9S3 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SEC61A2Q9H9S3 GNB3-201ENST00000229264 1923 ntAPPRIS P3 TSL 5 BASIC18.78■□□□□ 0.6
SEC61A2Q9H9S3 SERBP1-202ENST00000370990 1621 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
SEC61A2Q9H9S3 NFKBIL1-203ENST00000376148 1478 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
SEC61A2Q9H9S3 PCSK1N-201ENST00000218230 1050 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
SEC61A2Q9H9S3 RTCA-202ENST00000370126 538 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
SEC61A2Q9H9S3 MOSPD3-202ENST00000379527 1016 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
SEC61A2Q9H9S3 C12orf43-208ENST00000539736 1033 ntAPPRIS ALT2 TSL 2 BASIC18.78■□□□□ 0.6
SEC61A2Q9H9S3 FAM222B-208ENST00000581381 556 ntTSL 4 BASIC18.78■□□□□ 0.6
SEC61A2Q9H9S3 AC008105.3-201ENST00000586376 844 ntTSL 3 BASIC18.78■□□□□ 0.6
SEC61A2Q9H9S3 ZNF669-201ENST00000343381 1951 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
SEC61A2Q9H9S3 KLHL17-205ENST00000622660 1950 ntTSL 5 BASIC18.78■□□□□ 0.6
SEC61A2Q9H9S3 NDUFB2-212ENST00000476279 1666 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
SEC61A2Q9H9S3 RFXAP-201ENST00000255476 2304 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
SEC61A2Q9H9S3 MFF-203ENST00000349901 1716 ntTSL 2 BASIC18.77■□□□□ 0.6
SEC61A2Q9H9S3 CPNE2-201ENST00000290776 2645 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
SEC61A2Q9H9S3 PRICKLE3-206ENST00000599218 2062 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.6
SEC61A2Q9H9S3 DUSP7-202ENST00000495880 3340 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
SEC61A2Q9H9S3 URAD-201ENST00000332715 931 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.6
SEC61A2Q9H9S3 MRPL14-201ENST00000372014 959 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
SEC61A2Q9H9S3 FRMD8-208ENST00000531296 366 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
SEC61A2Q9H9S3 AL355102.2-201ENST00000553811 600 ntAPPRIS P1 TSL 2 BASIC18.77■□□□□ 0.6
SEC61A2Q9H9S3 MRM1-203ENST00000612760 1284 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
SEC61A2Q9H9S3 RAB43-208ENST00000615093 783 ntTSL 5 BASIC18.77■□□□□ 0.6
SEC61A2Q9H9S3 ZYG11B-202ENST00000545132 2294 ntTSL 2 BASIC18.77■□□□□ 0.6
SEC61A2Q9H9S3 NECTIN1-201ENST00000264025 5840 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
SEC61A2Q9H9S3 PUF60-203ENST00000453551 1842 ntTSL 1 (best) BASIC18.77■□□□□ 0.59
SEC61A2Q9H9S3 MGAT5B-201ENST00000301618 4486 ntAPPRIS P3 TSL 5 BASIC18.76■□□□□ 0.59
SEC61A2Q9H9S3 HOOK1-201ENST00000371208 5857 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
SEC61A2Q9H9S3 VRK2-201ENST00000340157 1888 ntAPPRIS P3 TSL 1 (best) BASIC18.76■□□□□ 0.59
SEC61A2Q9H9S3 ST3GAL3-207ENST00000353126 1969 ntTSL 5 BASIC18.76■□□□□ 0.59
SEC61A2Q9H9S3 KRTAP17-1-201ENST00000334202 779 ntAPPRIS P1 BASIC18.76■□□□□ 0.59
SEC61A2Q9H9S3 HBM-201ENST00000356815 506 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
SEC61A2Q9H9S3 TSEN15-207ENST00000533373 618 ntTSL 2 BASIC18.76■□□□□ 0.59
SEC61A2Q9H9S3 AL390816.2-201ENST00000554252 737 ntTSL 3 BASIC18.76■□□□□ 0.59
SEC61A2Q9H9S3 TPRG1LP1-201ENST00000598702 760 ntBASIC18.76■□□□□ 0.59
SEC61A2Q9H9S3 HCN1-202ENST00000634658 4738 ntTSL 3 BASIC18.76■□□□□ 0.59
SEC61A2Q9H9S3 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
SEC61A2Q9H9S3 PRR7-201ENST00000323249 1480 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
SEC61A2Q9H9S3 FBXL19-205ENST00000562319 2462 ntAPPRIS ALT2 TSL 2 BASIC18.76■□□□□ 0.59
SEC61A2Q9H9S3 SGMS1-210ENST00000619438 1680 ntTSL 5 BASIC18.76■□□□□ 0.59
SEC61A2Q9H9S3 PEX11G-203ENST00000593942 1345 ntTSL 5 BASIC18.75■□□□□ 0.59
SEC61A2Q9H9S3 CDC14A-203ENST00000370124 1883 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
SEC61A2Q9H9S3 AC079328.2-202ENST00000560903 1410 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
SEC61A2Q9H9S3 CACNA1A-246ENST00000637736 8340 ntAPPRIS ALT2 TSL 5 BASIC18.75■□□□□ 0.59
SEC61A2Q9H9S3 ZIM2-201ENST00000593711 2083 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
SEC61A2Q9H9S3 MSL1-204ENST00000578648 2267 ntTSL 5 BASIC18.75■□□□□ 0.59
SEC61A2Q9H9S3 LSM11-201ENST00000286307 6584 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
SEC61A2Q9H9S3 NXT1-201ENST00000254998 1123 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
SEC61A2Q9H9S3 EIF6-203ENST00000374450 1289 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
SEC61A2Q9H9S3 PEX5-204ENST00000412720 2105 ntTSL 2 BASIC18.75■□□□□ 0.59
SEC61A2Q9H9S3 ATP6V0B-204ENST00000471859 865 ntTSL 5 BASIC18.75■□□□□ 0.59
SEC61A2Q9H9S3 AC093817.1-201ENST00000507296 812 ntTSL 3 BASIC18.75■□□□□ 0.59
SEC61A2Q9H9S3 CCDC92B-201ENST00000575506 885 ntBASIC18.75■□□□□ 0.59
SEC61A2Q9H9S3 AC145207.2-202ENST00000576554 565 ntTSL 5 BASIC18.75■□□□□ 0.59
SEC61A2Q9H9S3 ANKRD20A6P-201ENST00000618763 204 ntBASIC18.75■□□□□ 0.59
SEC61A2Q9H9S3 UNC119-201ENST00000301032 1653 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
SEC61A2Q9H9S3 LTK-201ENST00000263800 3046 ntAPPRIS P4 TSL 1 (best) BASIC18.75■□□□□ 0.59
SEC61A2Q9H9S3 PPP1R3F-203ENST00000466508 1885 ntTSL 2 BASIC18.75■□□□□ 0.59
SEC61A2Q9H9S3 FAM83H-201ENST00000388913 5654 ntAPPRIS P1 TSL 5 BASIC18.75■□□□□ 0.59
SEC61A2Q9H9S3 PTPN18-202ENST00000347849 2472 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
SEC61A2Q9H9S3 TCF7L1-201ENST00000282111 2968 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
SEC61A2Q9H9S3 PAQR6-212ENST00000540423 1729 ntTSL 3 BASIC18.74■□□□□ 0.59
SEC61A2Q9H9S3 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
SEC61A2Q9H9S3 FBXO17-201ENST00000292852 2386 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
SEC61A2Q9H9S3 KIF12-202ENST00000468460 2162 ntAPPRIS ALT2 TSL 5 BASIC18.74■□□□□ 0.59
SEC61A2Q9H9S3 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC18.74■□□□□ 0.59
SEC61A2Q9H9S3 TMEM9B-205ENST00000534025 2083 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
SEC61A2Q9H9S3 COMMD5-207ENST00000543949 1571 ntAPPRIS P1 TSL 3 BASIC18.74■□□□□ 0.59
SEC61A2Q9H9S3 ZDHHC7-203ENST00000564466 1488 ntTSL 5 BASIC18.74■□□□□ 0.59
SEC61A2Q9H9S3 MFSD14C-201ENST00000375223 619 ntAPPRIS ALT2 TSL 5 BASIC18.74■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 28 ms