Protein–RNA interactions for Protein: Q8WWI5

SLC44A1, Choline transporter-like protein 1, humanhuman

Predictions only

Length 657 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC44A1Q8WWI5 MMP17-201ENST00000360564 2411 ntAPPRIS P2 TSL 1 (best) BASIC21.07■□□□□ 0.96
SLC44A1Q8WWI5 NRXN2-204ENST00000377559 6413 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
SLC44A1Q8WWI5 DNAAF3-207ENST00000527223 2228 ntAPPRIS ALT2 TSL 2 BASIC21.07■□□□□ 0.96
SLC44A1Q8WWI5 PCMTD2-202ENST00000299468 1049 ntTSL 5 BASIC21.07■□□□□ 0.96
SLC44A1Q8WWI5 DNAJC4-202ENST00000321685 1288 ntAPPRIS P3 TSL 1 (best) BASIC21.07■□□□□ 0.96
SLC44A1Q8WWI5 HDHD5-203ENST00000399852 1118 ntTSL 3 BASIC21.07■□□□□ 0.96
SLC44A1Q8WWI5 ERGIC1-206ENST00000519860 1000 ntTSL 3 BASIC21.07■□□□□ 0.96
SLC44A1Q8WWI5 DNAJC4-212ENST00000628077 938 ntTSL 5 BASIC21.07■□□□□ 0.96
SLC44A1Q8WWI5 NDUFB2-212ENST00000476279 1666 ntAPPRIS P1 TSL 5 BASIC21.07■□□□□ 0.96
SLC44A1Q8WWI5 ACP1-201ENST00000272065 1549 ntAPPRIS P5 TSL 1 (best) BASIC21.07■□□□□ 0.96
SLC44A1Q8WWI5 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
SLC44A1Q8WWI5 DUSP15-201ENST00000278979 1732 ntTSL 2 BASIC21.07■□□□□ 0.96
SLC44A1Q8WWI5 ZFP64-206ENST00000371523 2234 ntTSL 2 BASIC21.06■□□□□ 0.96
SLC44A1Q8WWI5 BLCAP-208ENST00000414542 2205 ntAPPRIS P1 TSL 3 BASIC21.06■□□□□ 0.96
SLC44A1Q8WWI5 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
SLC44A1Q8WWI5 GNG4-203ENST00000391854 5104 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
SLC44A1Q8WWI5 TESC-201ENST00000335209 1041 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
SLC44A1Q8WWI5 TMEM80-201ENST00000397510 1094 ntAPPRIS P2 TSL 5 BASIC21.06■□□□□ 0.96
SLC44A1Q8WWI5 C15orf61-202ENST00000557807 769 ntTSL 2 BASIC21.06■□□□□ 0.96
SLC44A1Q8WWI5 TMC6-218ENST00000591436 1155 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
SLC44A1Q8WWI5 SP3-208ENST00000640958 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
SLC44A1Q8WWI5 POMGNT1-201ENST00000371984 2728 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
SLC44A1Q8WWI5 SMIM11B-205ENST00000624304 1863 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
SLC44A1Q8WWI5 PROSER2-205ENST00000622831 1646 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
SLC44A1Q8WWI5 APBB3-203ENST00000357560 2218 ntAPPRIS P3 TSL 5 BASIC21.06■□□□□ 0.96
SLC44A1Q8WWI5 IRF7-201ENST00000330243 1992 ntAPPRIS P4 TSL 5 BASIC21.06■□□□□ 0.96
SLC44A1Q8WWI5 FPGS-202ENST00000373228 1383 ntTSL 5 BASIC21.06■□□□□ 0.96
SLC44A1Q8WWI5 OIP5-AS1-202ENST00000501665 1384 ntTSL 2 BASIC21.06■□□□□ 0.96
SLC44A1Q8WWI5 FMR1-201ENST00000218200 4333 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
SLC44A1Q8WWI5 NTNG2-202ENST00000393229 4792 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
SLC44A1Q8WWI5 RXFP3-201ENST00000330120 1852 ntAPPRIS P1 BASIC21.05■□□□□ 0.96
SLC44A1Q8WWI5 VDAC1-203ENST00000395047 1873 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
SLC44A1Q8WWI5 RUSC1-AS1-203ENST00000450199 1636 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
SLC44A1Q8WWI5 TM7SF2-201ENST00000279263 1722 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
SLC44A1Q8WWI5 EGFL7-201ENST00000308874 1747 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
SLC44A1Q8WWI5 SLC26A1-203ENST00000398520 1111 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
SLC44A1Q8WWI5 AL356441.2-201ENST00000443009 864 ntBASIC21.05■□□□□ 0.96
SLC44A1Q8WWI5 AP001107.5-202ENST00000533759 948 ntTSL 5 BASIC21.05■□□□□ 0.96
SLC44A1Q8WWI5 AC133561.4-201ENST00000566112 224 ntBASIC21.05■□□□□ 0.96
SLC44A1Q8WWI5 GJD3-201ENST00000578689 885 ntAPPRIS P1 BASIC21.05■□□□□ 0.96
SLC44A1Q8WWI5 TRIR-202ENST00000588213 841 ntTSL 3 BASIC21.05■□□□□ 0.96
SLC44A1Q8WWI5 GPAA1-202ENST00000361036 1840 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
SLC44A1Q8WWI5 UBC-201ENST00000339647 2688 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
SLC44A1Q8WWI5 KDELR1-203ENST00000597017 1594 ntTSL 2 BASIC21.05■□□□□ 0.96
SLC44A1Q8WWI5 TIGD5-201ENST00000504548 5390 ntAPPRIS P1 BASIC21.05■□□□□ 0.96
SLC44A1Q8WWI5 SPRTN-201ENST00000008440 1667 ntTSL 2 BASIC21.05■□□□□ 0.96
SLC44A1Q8WWI5 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC21.05■□□□□ 0.96
SLC44A1Q8WWI5 ARHGAP11A-205ENST00000563864 2279 ntTSL 5 BASIC21.04■□□□□ 0.96
SLC44A1Q8WWI5 JAKMIP1-201ENST00000282924 2585 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
SLC44A1Q8WWI5 HAND1-201ENST00000231121 1738 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
SLC44A1Q8WWI5 MYO1D-213ENST00000583621 1916 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
SLC44A1Q8WWI5 ZIM2-206ENST00000599935 2226 ntAPPRIS P1 TSL 5 BASIC21.04■□□□□ 0.96
SLC44A1Q8WWI5 PEMT-201ENST00000255389 1013 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
SLC44A1Q8WWI5 GADD45G-202ENST00000375769 977 ntTSL 2 BASIC21.04■□□□□ 0.96
SLC44A1Q8WWI5 U2AF1-202ENST00000380276 940 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
SLC44A1Q8WWI5 IGHV3-20-201ENST00000390606 415 ntAPPRIS P1 BASIC21.04■□□□□ 0.96
SLC44A1Q8WWI5 PRICKLE4-201ENST00000394259 939 ntAPPRIS ALT2 TSL 5 BASIC21.04■□□□□ 0.96
SLC44A1Q8WWI5 KRTAP5-4-201ENST00000399682 1181 ntAPPRIS P5 BASIC21.04■□□□□ 0.96
SLC44A1Q8WWI5 SIRT3-204ENST00000525319 1475 ntAPPRIS ALT2 TSL 2 BASIC21.04■□□□□ 0.96
SLC44A1Q8WWI5 ASL-203ENST00000380839 1765 ntTSL 5 BASIC21.04■□□□□ 0.96
SLC44A1Q8WWI5 CKMT1B-207ENST00000441322 1747 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
SLC44A1Q8WWI5 DR1-201ENST00000370267 1647 ntAPPRIS P1 TSL 2 BASIC21.04■□□□□ 0.96
SLC44A1Q8WWI5 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
SLC44A1Q8WWI5 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC21.03■□□□□ 0.96
SLC44A1Q8WWI5 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC21.03■□□□□ 0.96
SLC44A1Q8WWI5 ZGPAT-204ENST00000369967 1890 ntAPPRIS P1 TSL 5 BASIC21.03■□□□□ 0.96
SLC44A1Q8WWI5 EEF1D-201ENST00000317198 1458 ntAPPRIS ALT2 TSL 5 BASIC21.03■□□□□ 0.96
SLC44A1Q8WWI5 AL590128.2-201ENST00000442889 415 ntTSL 3 BASIC21.03■□□□□ 0.96
SLC44A1Q8WWI5 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
SLC44A1Q8WWI5 SH3BP2-204ENST00000452765 2265 ntAPPRIS P3 TSL 1 (best) BASIC21.03■□□□□ 0.96
SLC44A1Q8WWI5 CLDN23-201ENST00000519106 2169 ntAPPRIS P1 BASIC21.03■□□□□ 0.96
SLC44A1Q8WWI5 CHST1-201ENST00000308064 2718 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
SLC44A1Q8WWI5 PML-217ENST00000567543 1404 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
SLC44A1Q8WWI5 TCP11-203ENST00000373974 1689 ntAPPRIS ALT2 TSL 2 BASIC21.02■□□□□ 0.96
SLC44A1Q8WWI5 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC21.02■□□□□ 0.96
SLC44A1Q8WWI5 SMIM10L2B-201ENST00000433425 2737 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
SLC44A1Q8WWI5 GALNT10-202ENST00000377661 3778 ntTSL 5 BASIC21.02■□□□□ 0.96
SLC44A1Q8WWI5 C7orf26-201ENST00000344417 2182 ntAPPRIS P1 TSL 2 BASIC21.02■□□□□ 0.96
SLC44A1Q8WWI5 ABHD12B-201ENST00000337334 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.96
SLC44A1Q8WWI5 UBE2I-205ENST00000402301 1708 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
SLC44A1Q8WWI5 MOSPD3-204ENST00000424091 1115 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
SLC44A1Q8WWI5 TUSC3-209ENST00000509380 1266 ntTSL 5 BASIC21.02■□□□□ 0.96
SLC44A1Q8WWI5 NRIP3-203ENST00000531090 980 ntTSL 2 BASIC21.02■□□□□ 0.96
SLC44A1Q8WWI5 TRAPPC6A-205ENST00000592647 514 ntTSL 2 BASIC21.02■□□□□ 0.96
SLC44A1Q8WWI5 AC131212.1-201ENST00000613771 668 ntBASIC21.02■□□□□ 0.96
SLC44A1Q8WWI5 VPS13B-204ENST00000441350 1626 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
SLC44A1Q8WWI5 HOXA11-AS-204ENST00000522674 1549 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
SLC44A1Q8WWI5 PXK-203ENST00000383715 1756 ntTSL 5 BASIC21.02■□□□□ 0.96
SLC44A1Q8WWI5 DTX3-201ENST00000337737 2029 ntAPPRIS P3 TSL 2 BASIC21.02■□□□□ 0.96
SLC44A1Q8WWI5 SYT7-206ENST00000540677 2013 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
SLC44A1Q8WWI5 HDGFL2-208ENST00000616600 2281 ntAPPRIS P3 TSL 1 (best) BASIC21.02■□□□□ 0.95
SLC44A1Q8WWI5 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
SLC44A1Q8WWI5 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC21.02■□□□□ 0.95
SLC44A1Q8WWI5 TMED4-203ENST00000457408 2322 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
SLC44A1Q8WWI5 SEC22C-207ENST00000423701 1458 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
SLC44A1Q8WWI5 AC121338.2-201ENST00000622535 1744 ntBASIC21.01■□□□□ 0.95
SLC44A1Q8WWI5 PARD3-210ENST00000374794 5669 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
SLC44A1Q8WWI5 NGLY1-204ENST00000396649 2024 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
SLC44A1Q8WWI5 BBC3-202ENST00000341983 1538 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
SLC44A1Q8WWI5 PTMA-205ENST00000410064 814 ntTSL 2 BASIC21.01■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 26.3 ms