Protein–RNA interactions for Protein: Q8N3V7

SYNPO, Synaptopodin, humanhuman

Predictions only

Length 929 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPOQ8N3V7 NREP-209ENST00000455559 698 ntAPPRIS P1 TSL 4 BASIC21.44■■□□□ 1.02
SYNPOQ8N3V7 SCARA5-203ENST00000518030 1074 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
SYNPOQ8N3V7 MMAB-206ENST00000540016 945 ntTSL 3 BASIC21.44■■□□□ 1.02
SYNPOQ8N3V7 VSX1-205ENST00000429762 1977 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
SYNPOQ8N3V7 DNAAF3-203ENST00000524407 2059 ntAPPRIS ALT2 TSL 1 (best) BASIC21.44■■□□□ 1.02
SYNPOQ8N3V7 WT1-204ENST00000448076 2114 ntAPPRIS ALT2 TSL 2 BASIC21.44■■□□□ 1.02
SYNPOQ8N3V7 TLE3-216ENST00000559191 1575 ntTSL 5 BASIC21.44■■□□□ 1.02
SYNPOQ8N3V7 C1QL3-201ENST00000298943 2493 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
SYNPOQ8N3V7 DHRS2-202ENST00000344777 1678 ntAPPRIS ALT2 TSL 1 (best) BASIC21.44■■□□□ 1.02
SYNPOQ8N3V7 LINC00471-201ENST00000313064 1282 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
SYNPOQ8N3V7 NAT16-202ENST00000443096 1286 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
SYNPOQ8N3V7 AC108693.2-201ENST00000492981 303 ntTSL 3 BASIC21.43■■□□□ 1.02
SYNPOQ8N3V7 FGF8-207ENST00000618991 856 ntTSL 3 BASIC21.43■■□□□ 1.02
SYNPOQ8N3V7 AC244517.4-202ENST00000624089 484 ntTSL 3 BASIC21.43■■□□□ 1.02
SYNPOQ8N3V7 APOC3-205ENST00000630701 541 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
SYNPOQ8N3V7 NPDC1-202ENST00000371601 1494 ntAPPRIS P2 TSL 1 (best) BASIC21.43■■□□□ 1.02
SYNPOQ8N3V7 SLC25A24P1-201ENST00000411846 1569 ntTSL 5 BASIC21.43■■□□□ 1.02
SYNPOQ8N3V7 CD6-203ENST00000352009 1809 ntAPPRIS ALT2 TSL 1 (best) BASIC21.43■■□□□ 1.02
SYNPOQ8N3V7 POLDIP2-201ENST00000540200 2121 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
SYNPOQ8N3V7 KCNK13-201ENST00000282146 2522 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
SYNPOQ8N3V7 SPINT2-201ENST00000301244 1802 ntAPPRIS P2 TSL 1 (best) BASIC21.42■■□□□ 1.02
SYNPOQ8N3V7 PFKFB3-201ENST00000317350 1999 ntAPPRIS ALT1 TSL 5 BASIC21.42■■□□□ 1.02
SYNPOQ8N3V7 RHBDL1-202ENST00000352681 1463 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
SYNPOQ8N3V7 DUSP23-201ENST00000368107 756 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
SYNPOQ8N3V7 KRTAP5-8-201ENST00000398534 1183 ntAPPRIS P1 BASIC21.42■■□□□ 1.02
SYNPOQ8N3V7 HLA-DPB1-211ENST00000418931 1560 ntAPPRIS P2 BASIC21.42■■□□□ 1.02
SYNPOQ8N3V7 LINC00682-201ENST00000498940 1625 ntTSL 3 BASIC21.42■■□□□ 1.02
SYNPOQ8N3V7 CD44-222ENST00000526025 1052 ntTSL 2 BASIC21.42■■□□□ 1.02
SYNPOQ8N3V7 FUZ-212ENST00000528094 1479 ntTSL 2 BASIC21.42■■□□□ 1.02
SYNPOQ8N3V7 CFL1-211ENST00000531407 1062 ntTSL 2 BASIC21.42■■□□□ 1.02
SYNPOQ8N3V7 AC006058.3-201ENST00000606217 1069 ntBASIC21.42■■□□□ 1.02
SYNPOQ8N3V7 INO80E-214ENST00000620599 515 ntTSL 2 BASIC21.42■■□□□ 1.02
SYNPOQ8N3V7 PHLPP1-201ENST00000262719 6390 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
SYNPOQ8N3V7 DTNB-210ENST00000407186 2275 ntTSL 5 BASIC21.41■■□□□ 1.02
SYNPOQ8N3V7 TRH-201ENST00000302649 1978 ntAPPRIS P2 TSL 1 (best) BASIC21.41■■□□□ 1.02
SYNPOQ8N3V7 MRAS-202ENST00000423968 1803 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
SYNPOQ8N3V7 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
SYNPOQ8N3V7 SYNE2-201ENST00000341472 1132 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
SYNPOQ8N3V7 BEAN1-AS1-201ENST00000564618 533 ntTSL 4 BASIC21.41■■□□□ 1.02
SYNPOQ8N3V7 ARL16-209ENST00000573715 763 ntTSL 3 BASIC21.41■■□□□ 1.02
SYNPOQ8N3V7 ARL16-211ENST00000576135 694 ntTSL 3 BASIC21.41■■□□□ 1.02
SYNPOQ8N3V7 DONSON-210ENST00000453626 2332 ntTSL 5 BASIC21.41■■□□□ 1.02
SYNPOQ8N3V7 AFDN-AS1-201ENST00000359760 2238 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
SYNPOQ8N3V7 GALC-202ENST00000393568 2054 ntTSL 2 BASIC21.41■■□□□ 1.02
SYNPOQ8N3V7 EID2B-201ENST00000326282 1865 ntAPPRIS P1 BASIC21.41■■□□□ 1.02
SYNPOQ8N3V7 IL17RE-201ENST00000383814 2704 ntAPPRIS P2 TSL 1 (best) BASIC21.41■■□□□ 1.02
SYNPOQ8N3V7 NRG2-201ENST00000289409 2535 ntAPPRIS ALT2 TSL 5 BASIC21.4■■□□□ 1.02
SYNPOQ8N3V7 PDLIM2-202ENST00000308354 2236 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
SYNPOQ8N3V7 PDLIM2-203ENST00000339162 2226 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
SYNPOQ8N3V7 CUEDC1-202ENST00000407144 2190 ntAPPRIS P1 TSL 5 BASIC21.4■■□□□ 1.02
SYNPOQ8N3V7 GTF2A2-203ENST00000396061 758 ntAPPRIS P1 TSL 2 BASIC21.4■■□□□ 1.02
SYNPOQ8N3V7 SERPINH1P1-201ENST00000419794 1249 ntBASIC21.4■■□□□ 1.02
SYNPOQ8N3V7 STPG4-207ENST00000445927 891 ntAPPRIS P1 TSL 5 BASIC21.4■■□□□ 1.02
SYNPOQ8N3V7 AC128676.1-201ENST00000454392 318 ntBASIC21.4■■□□□ 1.02
SYNPOQ8N3V7 AC006252.1-201ENST00000483834 1101 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
SYNPOQ8N3V7 TMEM9B-203ENST00000528117 949 ntTSL 2 BASIC21.4■■□□□ 1.02
SYNPOQ8N3V7 AC142381.4-202ENST00000563973 229 ntBASIC21.4■■□□□ 1.02
SYNPOQ8N3V7 AC100835.1-201ENST00000565737 498 ntTSL 5 BASIC21.4■■□□□ 1.02
SYNPOQ8N3V7 AF274858.3-202ENST00000569906 755 ntTSL 3 BASIC21.4■■□□□ 1.02
SYNPOQ8N3V7 AC006435.1-201ENST00000571775 1065 ntTSL 5 BASIC21.4■■□□□ 1.02
SYNPOQ8N3V7 YIF1B-213ENST00000591755 1077 ntTSL 2 BASIC21.4■■□□□ 1.02
SYNPOQ8N3V7 PTPRM-201ENST00000332175 6095 ntAPPRIS P3 TSL 1 (best) BASIC21.4■■□□□ 1.02
SYNPOQ8N3V7 NCK2-201ENST00000233154 2683 ntAPPRIS P1 TSL 5 BASIC21.4■■□□□ 1.02
SYNPOQ8N3V7 IGF2-AS-201ENST00000381361 2063 ntTSL 2 BASIC21.4■■□□□ 1.02
SYNPOQ8N3V7 APBB3-204ENST00000358580 2020 ntTSL 5 BASIC21.39■■□□□ 1.02
SYNPOQ8N3V7 BEST2-204ENST00000553030 2000 ntAPPRIS P1 TSL 5 BASIC21.39■■□□□ 1.02
SYNPOQ8N3V7 SMAD1-201ENST00000302085 1966 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
SYNPOQ8N3V7 CCS-208ENST00000533244 1430 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
SYNPOQ8N3V7 TOX2-201ENST00000341197 1880 ntAPPRIS P1 TSL 2 BASIC21.39■■□□□ 1.02
SYNPOQ8N3V7 IGFBP1-203ENST00000468955 1369 ntTSL 5 BASIC21.39■■□□□ 1.02
SYNPOQ8N3V7 SH3YL1-201ENST00000356150 1763 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
SYNPOQ8N3V7 PRAF2-202ENST00000553851 1334 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
SYNPOQ8N3V7 LGALS9B-201ENST00000324290 1243 ntAPPRIS P2 TSL 5 BASIC21.39■■□□□ 1.01
SYNPOQ8N3V7 FAM167B-201ENST00000373582 936 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
SYNPOQ8N3V7 ART5-202ENST00000397067 1154 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
SYNPOQ8N3V7 CCDC107-206ENST00000426546 1242 ntAPPRIS P3 TSL 1 (best) BASIC21.39■■□□□ 1.01
SYNPOQ8N3V7 AC096537.1-201ENST00000437416 684 ntTSL 5 BASIC21.39■■□□□ 1.01
SYNPOQ8N3V7 AC026366.1-201ENST00000488803 879 ntBASIC21.39■■□□□ 1.01
SYNPOQ8N3V7 HTT-AS-201ENST00000503893 515 ntTSL 4 BASIC21.39■■□□□ 1.01
SYNPOQ8N3V7 UNC93B5-201ENST00000530315 699 ntBASIC21.39■■□□□ 1.01
SYNPOQ8N3V7 SLC30A2-201ENST00000374276 2494 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
SYNPOQ8N3V7 WDR86-208ENST00000628331 1905 ntTSL 5 BASIC21.39■■□□□ 1.01
SYNPOQ8N3V7 PLD4-201ENST00000392593 6515 ntAPPRIS P3 TSL 1 (best) BASIC21.39■■□□□ 1.01
SYNPOQ8N3V7 AC138028.2-201ENST00000440406 1539 ntTSL 2 BASIC21.39■■□□□ 1.01
SYNPOQ8N3V7 ZNF37BP-201ENST00000435805 1695 ntTSL 5 BASIC21.38■■□□□ 1.01
SYNPOQ8N3V7 MAN2C1-244ENST00000618257 1346 ntTSL 5 BASIC21.38■■□□□ 1.01
SYNPOQ8N3V7 SNRK-203ENST00000437827 1995 ntTSL 2 BASIC21.38■■□□□ 1.01
SYNPOQ8N3V7 NAT8L-202ENST00000423729 5870 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
SYNPOQ8N3V7 MAD2L2-204ENST00000376667 872 ntAPPRIS P1 TSL 2 BASIC21.38■■□□□ 1.01
SYNPOQ8N3V7 SEC61A2-206ENST00000379051 707 ntTSL 3 BASIC21.38■■□□□ 1.01
SYNPOQ8N3V7 ELOVL2-AS1-201ENST00000456190 737 ntTSL 3 BASIC21.38■■□□□ 1.01
SYNPOQ8N3V7 FAM66A-201ENST00000525829 921 ntTSL 2 BASIC21.38■■□□□ 1.01
SYNPOQ8N3V7 IGFBP6-203ENST00000548547 1177 ntAPPRIS ALT2 TSL 5 BASIC21.38■■□□□ 1.01
SYNPOQ8N3V7 MMD2-204ENST00000612910 778 ntTSL 5 BASIC21.38■■□□□ 1.01
SYNPOQ8N3V7 UPF3A-201ENST00000351487 2235 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
SYNPOQ8N3V7 FAHD1-202ENST00000382668 1845 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
SYNPOQ8N3V7 CDR2-201ENST00000268383 2702 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
SYNPOQ8N3V7 HADH-209ENST00000603302 2032 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
SYNPOQ8N3V7 AQP6-201ENST00000315520 1398 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
SYNPOQ8N3V7 TARBP2-201ENST00000266987 1867 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
Retrieved 100 of 98,524 protein–RNA pairs in 20.1 ms