Protein–RNA interactions for Protein: P35914

HMGCL, Hydroxymethylglutaryl-CoA lyase, mitochondrial, humanhuman

Predictions only

Length 325 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCLP35914 LINC01816-201ENST00000414141 662 ntTSL 1 (best) BASIC21■□□□□ 0.95
HMGCLP35914 KCNMA1-224ENST00000618048 1269 ntTSL 1 (best) BASIC21■□□□□ 0.95
HMGCLP35914 APOC3-205ENST00000630701 541 ntTSL 1 (best) BASIC21■□□□□ 0.95
HMGCLP35914 CEBPE-201ENST00000206513 1554 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
HMGCLP35914 MAP1LC3A-201ENST00000360668 1574 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
HMGCLP35914 TPM1-208ENST00000404484 1568 ntTSL 1 (best) BASIC21■□□□□ 0.95
HMGCLP35914 SERPINB5-201ENST00000382771 2783 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
HMGCLP35914 TPD52L1-203ENST00000368402 1308 ntTSL 1 (best) BASIC21■□□□□ 0.95
HMGCLP35914 CASTOR1-201ENST00000404953 1460 ntTSL 5 BASIC21■□□□□ 0.95
HMGCLP35914 TYMP-202ENST00000395678 1614 ntAPPRIS P3 TSL 1 (best) BASIC21■□□□□ 0.95
HMGCLP35914 GNB3-201ENST00000229264 1923 ntAPPRIS P3 TSL 5 BASIC21■□□□□ 0.95
HMGCLP35914 LOXL1-AS1-210ENST00000567257 2358 ntTSL 2 BASIC21■□□□□ 0.95
HMGCLP35914 CPEB1-218ENST00000620182 2422 ntTSL 2 BASIC20.99■□□□□ 0.95
HMGCLP35914 OPN3-201ENST00000366554 2620 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
HMGCLP35914 LYPD1-202ENST00000397463 1891 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
HMGCLP35914 HAND1-201ENST00000231121 1738 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
HMGCLP35914 NAA20-201ENST00000310450 920 ntTSL 2 BASIC20.99■□□□□ 0.95
HMGCLP35914 EXD3-208ENST00000479452 962 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
HMGCLP35914 CDK18-203ENST00000429964 1648 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
HMGCLP35914 NPTXR-201ENST00000333039 5784 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
HMGCLP35914 NEURL4-201ENST00000315614 5182 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
HMGCLP35914 PLSCR3-201ENST00000324822 1689 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
HMGCLP35914 SYNDIG1-201ENST00000376862 2522 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
HMGCLP35914 MOK-226ENST00000522874 1890 ntAPPRIS ALT2 TSL 5 BASIC20.98■□□□□ 0.95
HMGCLP35914 CBR1-201ENST00000290349 1293 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
HMGCLP35914 LY6E-201ENST00000292494 1181 ntAPPRIS P2 TSL 1 (best) BASIC20.98■□□□□ 0.95
HMGCLP35914 PCMT1-201ENST00000367378 1293 ntAPPRIS P3 TSL 1 (best) BASIC20.98■□□□□ 0.95
HMGCLP35914 AL731577.2-201ENST00000508096 555 ntTSL 2 BASIC20.98■□□□□ 0.95
HMGCLP35914 FAM66A-201ENST00000525829 921 ntTSL 2 BASIC20.98■□□□□ 0.95
HMGCLP35914 ILDR2-204ENST00000525740 2242 ntTSL 5 BASIC20.98■□□□□ 0.95
HMGCLP35914 ZNF622-201ENST00000308683 1699 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
HMGCLP35914 FAM3A-202ENST00000359889 1712 ntAPPRIS P1 TSL 2 BASIC20.98■□□□□ 0.95
HMGCLP35914 DTWD2-203ENST00000510708 2307 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
HMGCLP35914 AP000547.3-201ENST00000592918 1576 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
HMGCLP35914 ERLEC1-203ENST00000405123 1756 ntTSL 5 BASIC20.97■□□□□ 0.95
HMGCLP35914 GRK4-201ENST00000345167 2013 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
HMGCLP35914 RUNDC3B-207ENST00000493037 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
HMGCLP35914 MSANTD1-204ENST00000510580 2039 ntTSL 5 BASIC20.97■□□□□ 0.95
HMGCLP35914 C10orf91-202ENST00000392630 1846 ntTSL 2 BASIC20.97■□□□□ 0.95
HMGCLP35914 NAA20-203ENST00000398602 1604 ntTSL 5 BASIC20.97■□□□□ 0.95
HMGCLP35914 EFNA2-201ENST00000215368 949 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
HMGCLP35914 IL15RA-201ENST00000379971 588 ntTSL 3 BASIC20.97■□□□□ 0.95
HMGCLP35914 MPRIP-203ENST00000395806 527 ntTSL 3 BASIC20.97■□□□□ 0.95
HMGCLP35914 PYCR3-203ENST00000433751 1000 ntAPPRIS ALT2 TSL 2 BASIC20.97■□□□□ 0.95
HMGCLP35914 AGAP1-IT1-201ENST00000440498 664 ntTSL 3 BASIC20.97■□□□□ 0.95
HMGCLP35914 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
HMGCLP35914 C19orf84-201ENST00000570516 788 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
HMGCLP35914 AC007773.1-201ENST00000592680 972 ntTSL 2 BASIC20.97■□□□□ 0.95
HMGCLP35914 AC120498.10-201ENST00000621827 505 ntBASIC20.97■□□□□ 0.95
HMGCLP35914 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
HMGCLP35914 DACT1-204ENST00000541264 2610 ntAPPRIS ALT2 TSL 2 BASIC20.97■□□□□ 0.95
HMGCLP35914 PDXDC1-205ENST00000535621 2048 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
HMGCLP35914 PUF60-203ENST00000453551 1842 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
HMGCLP35914 CNIH2-201ENST00000311445 1356 ntAPPRIS P2 TSL 1 (best) BASIC20.97■□□□□ 0.95
HMGCLP35914 RARRES2-202ENST00000466675 1618 ntAPPRIS P1 TSL 2 BASIC20.96■□□□□ 0.95
HMGCLP35914 USP45-202ENST00000329966 1444 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
HMGCLP35914 KRT16P2-201ENST00000414673 1423 ntBASIC20.96■□□□□ 0.95
HMGCLP35914 CRHR1-201ENST00000293493 2621 ntTSL 5 BASIC20.96■□□□□ 0.95
HMGCLP35914 TNIP2-203ENST00000503235 1653 ntTSL 3 BASIC20.96■□□□□ 0.95
HMGCLP35914 PTPN18-202ENST00000347849 2472 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
HMGCLP35914 SMAGP-205ENST00000603864 1518 ntAPPRIS P1 TSL 2 BASIC20.96■□□□□ 0.95
HMGCLP35914 RARRES2-201ENST00000223271 740 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
HMGCLP35914 MAD2L2-204ENST00000376667 872 ntAPPRIS P1 TSL 2 BASIC20.96■□□□□ 0.95
HMGCLP35914 GXYLT1P2-201ENST00000433312 1230 ntBASIC20.96■□□□□ 0.95
HMGCLP35914 NEDD4L-225ENST00000589054 1033 ntTSL 3 BASIC20.96■□□□□ 0.95
HMGCLP35914 PARN-205ENST00000539279 1557 ntTSL 2 BASIC20.96■□□□□ 0.95
HMGCLP35914 OTOP1-201ENST00000296358 1864 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
HMGCLP35914 SPI1-202ENST00000378538 1403 ntAPPRIS P3 TSL 1 (best) BASIC20.95■□□□□ 0.95
HMGCLP35914 VAV3-202ENST00000370056 4990 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
HMGCLP35914 TMEM17-201ENST00000335390 1797 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
HMGCLP35914 GPC1-202ENST00000420138 1835 ntTSL 5 BASIC20.95■□□□□ 0.94
HMGCLP35914 AC007128.1-201ENST00000424460 1853 ntTSL 5 BASIC20.95■□□□□ 0.94
HMGCLP35914 AC132008.2-203ENST00000418868 1552 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
HMGCLP35914 PACRGL-208ENST00000503585 1582 ntAPPRIS P1 TSL 2 BASIC20.95■□□□□ 0.94
HMGCLP35914 AC009126.1-201ENST00000501338 2245 ntTSL 2 BASIC20.95■□□□□ 0.94
HMGCLP35914 FAM207A-201ENST00000291634 927 ntAPPRIS P3 TSL 1 (best) BASIC20.95■□□□□ 0.94
HMGCLP35914 NFKBIB-201ENST00000313582 1159 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
HMGCLP35914 AC012313.1-204ENST00000444227 462 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
HMGCLP35914 IDH2-203ENST00000559482 1278 ntTSL 5 BASIC20.95■□□□□ 0.94
HMGCLP35914 AC106820.5-201ENST00000566085 789 ntTSL 3 BASIC20.95■□□□□ 0.94
HMGCLP35914 LPCAT4-201ENST00000314891 2262 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
HMGCLP35914 ZNF669-201ENST00000343381 1951 ntAPPRIS P3 TSL 1 (best) BASIC20.95■□□□□ 0.94
HMGCLP35914 DOCK5-208ENST00000481100 2166 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
HMGCLP35914 ARL6IP4-220ENST00000543566 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
HMGCLP35914 FEM1AP4-201ENST00000443167 1987 ntBASIC20.94■□□□□ 0.94
HMGCLP35914 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
HMGCLP35914 RAP1B-204ENST00000393436 2049 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
HMGCLP35914 VGF-202ENST00000445482 2477 ntAPPRIS P1 TSL 5 BASIC20.94■□□□□ 0.94
HMGCLP35914 STX7-201ENST00000367937 1090 ntTSL 5 BASIC20.94■□□□□ 0.94
HMGCLP35914 SLC7A5P1-201ENST00000568957 537 ntBASIC20.94■□□□□ 0.94
HMGCLP35914 TFG-210ENST00000620299 1289 ntTSL 5 BASIC20.94■□□□□ 0.94
HMGCLP35914 AC007375.3-201ENST00000600936 2314 ntBASIC20.94■□□□□ 0.94
HMGCLP35914 ZGPAT-204ENST00000369967 1890 ntAPPRIS P1 TSL 5 BASIC20.94■□□□□ 0.94
HMGCLP35914 TMEM125-201ENST00000432792 1850 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
HMGCLP35914 DSG2-201ENST00000261590 5831 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
HMGCLP35914 STEAP2-204ENST00000394626 2456 ntTSL 2 BASIC20.94■□□□□ 0.94
HMGCLP35914 YWHAZ-205ENST00000395956 2974 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
HMGCLP35914 AL024507.2-201ENST00000606070 2574 ntBASIC20.93■□□□□ 0.94
HMGCLP35914 HAUS4-205ENST00000541587 1637 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
HMGCLP35914 SH3GL1-206ENST00000598564 2194 ntTSL 2 BASIC20.93■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 65.9 ms