Protein–RNA interactions for Protein: O95025

SEMA3D, Semaphorin-3D, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3DO95025 STX5-203ENST00000394690 1568 ntTSL 5 BASIC20.12■□□□□ 0.81
SEMA3DO95025 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
SEMA3DO95025 ASCL2-201ENST00000331289 1852 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
SEMA3DO95025 MXRA8-201ENST00000309212 2273 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
SEMA3DO95025 CACNA1B-201ENST00000277549 7158 ntAPPRIS ALT2 TSL 1 (best) BASIC20.11■□□□□ 0.81
SEMA3DO95025 CACNA1B-202ENST00000277551 7158 ntAPPRIS ALT2 TSL 5 BASIC20.11■□□□□ 0.81
SEMA3DO95025 PCSK6-217ENST00000618548 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC20.11■□□□□ 0.81
SEMA3DO95025 GRINA-202ENST00000395068 1814 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
SEMA3DO95025 SH3RF3-201ENST00000309415 5803 ntAPPRIS P1 TSL 5 BASIC20.11■□□□□ 0.81
SEMA3DO95025 CHN1-203ENST00000409156 1761 ntTSL 2 BASIC20.11■□□□□ 0.81
SEMA3DO95025 DYM-203ENST00000442713 2147 ntTSL 2 BASIC20.11■□□□□ 0.81
SEMA3DO95025 RARA-201ENST00000254066 2414 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
SEMA3DO95025 PPCS-202ENST00000372560 793 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
SEMA3DO95025 LRRC3C-201ENST00000377924 891 ntAPPRIS P1 TSL 3 BASIC20.11■□□□□ 0.81
SEMA3DO95025 AP003071.3-201ENST00000562506 366 ntTSL 3 BASIC20.11■□□□□ 0.81
SEMA3DO95025 EEF1DP3-203ENST00000566025 782 ntBASIC20.11■□□□□ 0.81
SEMA3DO95025 ELANE-202ENST00000590230 1028 ntAPPRIS P1 TSL 5 BASIC20.11■□□□□ 0.81
SEMA3DO95025 OSR1-201ENST00000272223 1936 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
SEMA3DO95025 MAP7D1-201ENST00000316156 3456 ntAPPRIS ALT2 TSL 1 (best) BASIC20.11■□□□□ 0.81
SEMA3DO95025 SMURF1-201ENST00000361125 5737 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
SEMA3DO95025 AL121603.2-201ENST00000557373 2117 ntBASIC20.11■□□□□ 0.81
SEMA3DO95025 PML-217ENST00000567543 1404 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
SEMA3DO95025 RASD1-202ENST00000579152 1404 ntTSL 2 BASIC20.1■□□□□ 0.81
SEMA3DO95025 DDIT4-201ENST00000307365 1748 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
SEMA3DO95025 ZYG11B-202ENST00000545132 2294 ntTSL 2 BASIC20.1■□□□□ 0.81
SEMA3DO95025 DNAJA4-202ENST00000394852 3116 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
SEMA3DO95025 NOC4L-201ENST00000330579 1632 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
SEMA3DO95025 PABPC1L2B-201ENST00000373521 2197 ntAPPRIS P1 BASIC20.1■□□□□ 0.81
SEMA3DO95025 OTOP1-201ENST00000296358 1864 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
SEMA3DO95025 MAP1LC3A-201ENST00000360668 1574 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
SEMA3DO95025 RPL8-201ENST00000262584 1041 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
SEMA3DO95025 PHLDA3-201ENST00000367309 896 ntAPPRIS P1 TSL 5 BASIC20.1■□□□□ 0.81
SEMA3DO95025 MOSPD3-203ENST00000393950 1191 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
SEMA3DO95025 RNF146-206ENST00000480444 843 ntTSL 2 BASIC20.1■□□□□ 0.81
SEMA3DO95025 AC053503.5-201ENST00000601508 636 ntBASIC20.1■□□□□ 0.81
SEMA3DO95025 AL138963.3-201ENST00000610057 588 ntTSL 4 BASIC20.1■□□□□ 0.81
SEMA3DO95025 ATP10A-207ENST00000619904 988 ntTSL 5 BASIC20.1■□□□□ 0.81
SEMA3DO95025 CCDC185-201ENST00000366875 2054 ntAPPRIS P1 BASIC20.1■□□□□ 0.81
SEMA3DO95025 ERLEC1-203ENST00000405123 1756 ntTSL 5 BASIC20.1■□□□□ 0.81
SEMA3DO95025 MPST-205ENST00000404802 1453 ntAPPRIS P1 TSL 3 BASIC20.1■□□□□ 0.81
SEMA3DO95025 RBKS-201ENST00000302188 1973 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
SEMA3DO95025 C7orf25-201ENST00000350427 2451 ntAPPRIS P1 TSL 2 BASIC20.1■□□□□ 0.81
SEMA3DO95025 SEC61A2-205ENST00000379033 2462 ntTSL 2 BASIC20.1■□□□□ 0.81
SEMA3DO95025 AP004608.1-201ENST00000531319 1402 ntTSL 2 BASIC20.1■□□□□ 0.81
SEMA3DO95025 LINC02228-203ENST00000641970 1355 ntBASIC20.09■□□□□ 0.81
SEMA3DO95025 MEGF6-202ENST00000356575 5455 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
SEMA3DO95025 EPO-201ENST00000252723 1330 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
SEMA3DO95025 TMEM17-201ENST00000335390 1797 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
SEMA3DO95025 FBXL19-205ENST00000562319 2462 ntAPPRIS ALT2 TSL 2 BASIC20.09■□□□□ 0.81
SEMA3DO95025 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC20.09■□□□□ 0.81
SEMA3DO95025 ADAMTS13-204ENST00000371911 1155 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
SEMA3DO95025 SDHAP3-201ENST00000436493 736 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
SEMA3DO95025 AC123595.1-201ENST00000440769 1046 ntBASIC20.09■□□□□ 0.81
SEMA3DO95025 AC145207.2-202ENST00000576554 565 ntTSL 5 BASIC20.09■□□□□ 0.81
SEMA3DO95025 PAQR4-201ENST00000293978 2644 ntTSL 2 BASIC20.09■□□□□ 0.81
SEMA3DO95025 PARD3-207ENST00000374788 5996 ntAPPRIS ALT1 TSL 1 (best) BASIC20.09■□□□□ 0.81
SEMA3DO95025 POLR2F-205ENST00000442738 2106 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
SEMA3DO95025 LINC00682-201ENST00000498940 1625 ntTSL 3 BASIC20.09■□□□□ 0.81
SEMA3DO95025 EPHX3-204ENST00000602233 1805 ntAPPRIS P1 TSL 5 BASIC20.09■□□□□ 0.81
SEMA3DO95025 RPS6-203ENST00000380384 1355 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
SEMA3DO95025 RARG-204ENST00000543726 1779 ntTSL 2 BASIC20.08■□□□□ 0.81
SEMA3DO95025 TEAD2-201ENST00000311227 2164 ntAPPRIS P3 TSL 1 (best) BASIC20.08■□□□□ 0.81
SEMA3DO95025 ADCK2-201ENST00000072869 2377 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
SEMA3DO95025 VPS29-206ENST00000549578 1523 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
SEMA3DO95025 RASSF1-203ENST00000359365 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC20.08■□□□□ 0.81
SEMA3DO95025 APLP1-203ENST00000586861 2052 ntTSL 2 BASIC20.08■□□□□ 0.81
SEMA3DO95025 LYPD1-202ENST00000397463 1891 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
SEMA3DO95025 CYC1-201ENST00000318911 1240 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
SEMA3DO95025 JTB-203ENST00000368589 1216 ntTSL 2 BASIC20.08■□□□□ 0.81
SEMA3DO95025 DACT2-203ENST00000607983 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.8
SEMA3DO95025 HOMEZ-201ENST00000357460 4971 ntAPPRIS P2 TSL 1 (best) BASIC20.08■□□□□ 0.8
SEMA3DO95025 BAALC-205ENST00000438105 2662 ntTSL 1 (best) BASIC20.08■□□□□ 0.8
SEMA3DO95025 GAS2L1-207ENST00000611648 2482 ntAPPRIS P1 TSL 2 BASIC20.08■□□□□ 0.8
SEMA3DO95025 HSF4-215ENST00000521374 1515 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
SEMA3DO95025 TMEM125-201ENST00000432792 1850 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
SEMA3DO95025 FBRS-202ENST00000356166 5200 ntTSL 5 BASIC20.07■□□□□ 0.8
SEMA3DO95025 ZNF622-201ENST00000308683 1699 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
SEMA3DO95025 PMPCA-201ENST00000371717 2174 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
SEMA3DO95025 KRT87P-202ENST00000534226 1464 ntBASIC20.07■□□□□ 0.8
SEMA3DO95025 KCNJ12-202ENST00000583088 5425 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
SEMA3DO95025 KCNMB4-201ENST00000258111 4731 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
SEMA3DO95025 AC079140.4-201ENST00000507448 529 ntBASIC20.07■□□□□ 0.8
SEMA3DO95025 RASGEF1B-208ENST00000510780 539 ntTSL 3 BASIC20.07■□□□□ 0.8
SEMA3DO95025 RASGEF1B-209ENST00000512343 498 ntTSL 3 BASIC20.07■□□□□ 0.8
SEMA3DO95025 SFTPC-205ENST00000521315 1046 ntAPPRIS ALT1 TSL 1 (best) BASIC20.07■□□□□ 0.8
SEMA3DO95025 SCN1B-203ENST00000595652 814 ntTSL 2 BASIC20.07■□□□□ 0.8
SEMA3DO95025 EML2-201ENST00000245925 2264 ntAPPRIS P3 TSL 1 (best) BASIC20.07■□□□□ 0.8
SEMA3DO95025 EFS-202ENST00000351354 2704 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
SEMA3DO95025 FIP1L1-201ENST00000306932 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC20.07■□□□□ 0.8
SEMA3DO95025 PDXDC1-205ENST00000535621 2048 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
SEMA3DO95025 CSNK1G3-206ENST00000511130 1356 ntTSL 2 BASIC20.07■□□□□ 0.8
SEMA3DO95025 PPP3CC-201ENST00000240139 2189 ntAPPRIS P3 TSL 1 (best) BASIC20.07■□□□□ 0.8
SEMA3DO95025 KIF12-207ENST00000640217 2194 ntAPPRIS P5 TSL 5 BASIC20.07■□□□□ 0.8
SEMA3DO95025 KCNIP2-207ENST00000358038 2489 ntAPPRIS ALT1 TSL 1 (best) BASIC20.07■□□□□ 0.8
SEMA3DO95025 EPHA8-202ENST00000374644 1802 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
SEMA3DO95025 FMR1-AS1-202ENST00000596112 1845 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
SEMA3DO95025 DAPK3-202ENST00000545797 2257 ntAPPRIS P1 TSL 2 BASIC20.06■□□□□ 0.8
SEMA3DO95025 AFDN-202ENST00000351017 5823 ntTSL 5 BASIC20.06■□□□□ 0.8
SEMA3DO95025 MCAT-201ENST00000290429 2056 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
SEMA3DO95025 CPNE9-203ENST00000383832 2068 ntAPPRIS P1 TSL 5 BASIC20.06■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 14.7 ms