Protein–RNA interactions for Protein: Q9HAW0

BRF2, Transcription factor IIIB 50 kDa subunit, humanhuman

Predictions only

Length 419 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRF2Q9HAW0 LIN7B-202ENST00000391864 582 ntTSL 3 BASIC20.17■□□□□ 0.82
BRF2Q9HAW0 NUDT14-202ENST00000392568 845 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
BRF2Q9HAW0 LTC4S-202ENST00000401985 486 ntTSL 3 BASIC20.17■□□□□ 0.82
BRF2Q9HAW0 CDIPT-210ENST00000570016 1346 ntAPPRIS P1 TSL 5 BASIC20.17■□□□□ 0.82
BRF2Q9HAW0 AC007128.1-201ENST00000424460 1853 ntTSL 5 BASIC20.17■□□□□ 0.82
BRF2Q9HAW0 TEAD1-206ENST00000527636 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
BRF2Q9HAW0 NABP2-202ENST00000341463 1411 ntAPPRIS P1 TSL 3 BASIC20.17■□□□□ 0.82
BRF2Q9HAW0 LINC00969-219ENST00000453324 1439 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
BRF2Q9HAW0 DCAF4-202ENST00000358377 2024 ntAPPRIS P4 TSL 1 (best) BASIC20.17■□□□□ 0.82
BRF2Q9HAW0 HABP4-201ENST00000375249 2615 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
BRF2Q9HAW0 TRIM3-214ENST00000536344 2704 ntTSL 2 BASIC20.17■□□□□ 0.82
BRF2Q9HAW0 TEAD2-208ENST00000598810 2191 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
BRF2Q9HAW0 CACNA1B-201ENST00000277549 7158 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
BRF2Q9HAW0 CACNA1B-202ENST00000277551 7158 ntAPPRIS ALT2 TSL 5 BASIC20.17■□□□□ 0.82
BRF2Q9HAW0 C10orf55-202ENST00000412307 2360 ntAPPRIS P1 TSL 5 BASIC20.16■□□□□ 0.82
BRF2Q9HAW0 PTDSS2-201ENST00000308020 2445 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
BRF2Q9HAW0 IRX2-201ENST00000302057 2456 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
BRF2Q9HAW0 RARG-204ENST00000543726 1779 ntTSL 2 BASIC20.16■□□□□ 0.82
BRF2Q9HAW0 FAIM-203ENST00000393034 927 ntAPPRIS P3 TSL 2 BASIC20.16■□□□□ 0.82
BRF2Q9HAW0 NT5C3AP1-201ENST00000394500 1012 ntBASIC20.16■□□□□ 0.82
BRF2Q9HAW0 MTURN-203ENST00000409688 843 ntTSL 2 BASIC20.16■□□□□ 0.82
BRF2Q9HAW0 RNF146-206ENST00000480444 843 ntTSL 2 BASIC20.16■□□□□ 0.82
BRF2Q9HAW0 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
BRF2Q9HAW0 IGDCC4-201ENST00000352385 6508 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
BRF2Q9HAW0 UCK2-201ENST00000367879 1375 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
BRF2Q9HAW0 MFF-207ENST00000409565 1548 ntTSL 2 BASIC20.16■□□□□ 0.82
BRF2Q9HAW0 ANAPC4-201ENST00000315368 2685 ntAPPRIS P3 TSL 1 (best) BASIC20.16■□□□□ 0.82
BRF2Q9HAW0 LINC00682-201ENST00000498940 1625 ntTSL 3 BASIC20.16■□□□□ 0.82
BRF2Q9HAW0 TM7SF2-201ENST00000279263 1722 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
BRF2Q9HAW0 BASP1-201ENST00000322611 1878 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
BRF2Q9HAW0 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC20.15■□□□□ 0.82
BRF2Q9HAW0 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC20.15■□□□□ 0.82
BRF2Q9HAW0 BCL11B-203ENST00000443726 2599 ntAPPRIS ALT2 TSL 5 BASIC20.15■□□□□ 0.82
BRF2Q9HAW0 NME4-201ENST00000219479 995 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
BRF2Q9HAW0 IRS3P-201ENST00000223076 1006 ntBASIC20.15■□□□□ 0.82
BRF2Q9HAW0 NME4-202ENST00000382940 766 ntTSL 3 BASIC20.15■□□□□ 0.82
BRF2Q9HAW0 LINC01167-201ENST00000423232 604 ntTSL 3 BASIC20.15■□□□□ 0.82
BRF2Q9HAW0 JARID2-AS1-201ENST00000441978 455 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
BRF2Q9HAW0 GLI4-210ENST00000523522 1297 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
BRF2Q9HAW0 EEF1DP3-203ENST00000566025 782 ntBASIC20.15■□□□□ 0.82
BRF2Q9HAW0 AC053503.5-201ENST00000601508 636 ntBASIC20.15■□□□□ 0.82
BRF2Q9HAW0 POLR2E-214ENST00000619917 932 ntTSL 5 BASIC20.15■□□□□ 0.82
BRF2Q9HAW0 NME4-211ENST00000620944 1193 ntTSL 2 BASIC20.15■□□□□ 0.82
BRF2Q9HAW0 AC010999.2-201ENST00000621974 596 ntTSL 2 BASIC20.15■□□□□ 0.82
BRF2Q9HAW0 AC110285.2-201ENST00000571724 1565 ntTSL 2 BASIC20.15■□□□□ 0.82
BRF2Q9HAW0 NOC4L-201ENST00000330579 1632 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
BRF2Q9HAW0 HAND1-201ENST00000231121 1738 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
BRF2Q9HAW0 SH3D19-211ENST00000604030 5228 ntTSL 5 BASIC20.15■□□□□ 0.82
BRF2Q9HAW0 TIGD5-201ENST00000504548 5390 ntAPPRIS P1 BASIC20.15■□□□□ 0.82
BRF2Q9HAW0 TRIM3-201ENST00000345851 2879 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.82
BRF2Q9HAW0 CCDC88B-203ENST00000359902 2326 ntTSL 1 (best) BASIC20.14■□□□□ 0.82
BRF2Q9HAW0 CENPU-201ENST00000281453 1998 ntAPPRIS P2 TSL 1 (best) BASIC20.14■□□□□ 0.81
BRF2Q9HAW0 UBE2I-205ENST00000402301 1708 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
BRF2Q9HAW0 ARSA-205ENST00000453344 1650 ntTSL 2 BASIC20.14■□□□□ 0.81
BRF2Q9HAW0 MRPL46-201ENST00000312475 1019 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
BRF2Q9HAW0 MIR638-201ENST00000385237 100 ntBASIC20.14■□□□□ 0.81
BRF2Q9HAW0 CHTF8-210ENST00000523421 766 ntTSL 3 BASIC20.14■□□□□ 0.81
BRF2Q9HAW0 AES-207ENST00000586839 942 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
BRF2Q9HAW0 CERS1-205ENST00000623927 2558 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
BRF2Q9HAW0 E2F1-201ENST00000343380 2503 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
BRF2Q9HAW0 CCSAP-201ENST00000284617 5121 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
BRF2Q9HAW0 AC243965.2-201ENST00000612576 2671 ntTSL 5 BASIC20.13■□□□□ 0.81
BRF2Q9HAW0 AC138649.1-201ENST00000619611 1449 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
BRF2Q9HAW0 ILKAP-211ENST00000612675 1335 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
BRF2Q9HAW0 MOSPD3-202ENST00000379527 1016 ntAPPRIS P1 TSL 5 BASIC20.13■□□□□ 0.81
BRF2Q9HAW0 MED14OS-201ENST00000456333 900 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
BRF2Q9HAW0 AC105265.2-201ENST00000467189 838 ntBASIC20.13■□□□□ 0.81
BRF2Q9HAW0 STOX2-205ENST00000513034 807 ntTSL 3 BASIC20.13■□□□□ 0.81
BRF2Q9HAW0 FNDC10-201ENST00000422725 2085 ntAPPRIS P1 BASIC20.13■□□□□ 0.81
BRF2Q9HAW0 PCED1A-202ENST00000360652 2016 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
BRF2Q9HAW0 NGLY1-204ENST00000396649 2024 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
BRF2Q9HAW0 PLSCR3-201ENST00000324822 1689 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
BRF2Q9HAW0 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC20.12■□□□□ 0.81
BRF2Q9HAW0 VPS29-206ENST00000549578 1523 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
BRF2Q9HAW0 TMEM206-205ENST00000535273 2119 ntTSL 2 BASIC20.12■□□□□ 0.81
BRF2Q9HAW0 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
BRF2Q9HAW0 ITGB1BP1-203ENST00000359712 2126 ntTSL 2 BASIC20.12■□□□□ 0.81
BRF2Q9HAW0 INPPL1-201ENST00000298229 4733 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
BRF2Q9HAW0 PAQR6-213ENST00000612424 2037 ntTSL 2 BASIC20.12■□□□□ 0.81
BRF2Q9HAW0 HSF4-215ENST00000521374 1515 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
BRF2Q9HAW0 HNRNPLL-204ENST00000409328 1908 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
BRF2Q9HAW0 NTN1-201ENST00000173229 5954 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
BRF2Q9HAW0 MRAS-202ENST00000423968 1803 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
BRF2Q9HAW0 GPR35-204ENST00000430267 1399 ntAPPRIS ALT2 TSL 5 BASIC20.11■□□□□ 0.81
BRF2Q9HAW0 CSNK1G3-206ENST00000511130 1356 ntTSL 2 BASIC20.11■□□□□ 0.81
BRF2Q9HAW0 WWTR1-AS1-202ENST00000479752 1700 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
BRF2Q9HAW0 EPO-201ENST00000252723 1330 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
BRF2Q9HAW0 LRRC3C-201ENST00000377924 891 ntAPPRIS P1 TSL 3 BASIC20.11■□□□□ 0.81
BRF2Q9HAW0 TSPY4-201ENST00000383008 1143 ntAPPRIS ALT2 TSL 5 BASIC20.11■□□□□ 0.81
BRF2Q9HAW0 AC027612.3-201ENST00000413684 1047 ntBASIC20.11■□□□□ 0.81
BRF2Q9HAW0 ARHGAP24-206ENST00000503995 1273 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
BRF2Q9HAW0 SCN1B-203ENST00000595652 814 ntTSL 2 BASIC20.11■□□□□ 0.81
BRF2Q9HAW0 JPT1-206ENST00000476258 2289 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
BRF2Q9HAW0 PANO1-201ENST00000620120 1680 ntAPPRIS P1 BASIC20.1■□□□□ 0.81
BRF2Q9HAW0 NUDT10-201ENST00000356450 1917 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
BRF2Q9HAW0 ZGPAT-204ENST00000369967 1890 ntAPPRIS P1 TSL 5 BASIC20.1■□□□□ 0.81
BRF2Q9HAW0 MOK-226ENST00000522874 1890 ntAPPRIS ALT2 TSL 5 BASIC20.1■□□□□ 0.81
BRF2Q9HAW0 CRB3-202ENST00000356762 733 ntAPPRIS P4 TSL 1 (best) BASIC20.1■□□□□ 0.81
BRF2Q9HAW0 SLC39A3-203ENST00000545664 1219 ntTSL 2 BASIC20.1■□□□□ 0.81
BRF2Q9HAW0 PALM-207ENST00000590161 2137 ntTSL 4 BASIC20.1■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 25.3 ms