Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 IGFBP6-203ENST00000548547 1177 ntAPPRIS ALT2 TSL 5 BASIC20.4■□□□□ 0.86
PCDHGA1Q9Y5H4 AC044860.1-201ENST00000560756 1160 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
PCDHGA1Q9Y5H4 AC006435.1-201ENST00000571775 1065 ntTSL 5 BASIC20.4■□□□□ 0.86
PCDHGA1Q9Y5H4 BTBD2-201ENST00000255608 2649 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
PCDHGA1Q9Y5H4 SEPT5-210ENST00000455784 2070 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
PCDHGA1Q9Y5H4 PTPN2-202ENST00000327283 1706 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
PCDHGA1Q9Y5H4 TNFRSF10B-202ENST00000347739 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.86
PCDHGA1Q9Y5H4 SYT6-209ENST00000610222 1707 ntAPPRIS P1 TSL 5 BASIC20.39■□□□□ 0.86
PCDHGA1Q9Y5H4 LTB4R-201ENST00000345363 1616 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
PCDHGA1Q9Y5H4 NPDC1-202ENST00000371601 1494 ntAPPRIS P2 TSL 1 (best) BASIC20.39■□□□□ 0.85
PCDHGA1Q9Y5H4 TMEM175-212ENST00000508204 1399 ntTSL 3 BASIC20.39■□□□□ 0.85
PCDHGA1Q9Y5H4 DUSP18-205ENST00000404885 1306 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
PCDHGA1Q9Y5H4 MAF-202ENST00000393350 6384 ntAPPRIS ALT2 BASIC20.39■□□□□ 0.85
PCDHGA1Q9Y5H4 AL596275.1-201ENST00000423464 877 ntBASIC20.39■□□□□ 0.85
PCDHGA1Q9Y5H4 HOTAIRM1-203ENST00000429611 722 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
PCDHGA1Q9Y5H4 AP000697.1-201ENST00000430607 339 ntTSL 5 BASIC20.39■□□□□ 0.85
PCDHGA1Q9Y5H4 ELOVL2-AS1-201ENST00000456190 737 ntTSL 3 BASIC20.39■□□□□ 0.85
PCDHGA1Q9Y5H4 RTBDN-203ENST00000458671 1066 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.85
PCDHGA1Q9Y5H4 ADGRB1-202ENST00000517894 6241 ntAPPRIS P1 TSL 5 BASIC20.39■□□□□ 0.85
PCDHGA1Q9Y5H4 SMOX-202ENST00000305958 2233 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
PCDHGA1Q9Y5H4 MMP23B-201ENST00000356026 1326 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
PCDHGA1Q9Y5H4 C10orf91-201ENST00000321248 1257 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
PCDHGA1Q9Y5H4 MTHFD1L-201ENST00000367307 1049 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
PCDHGA1Q9Y5H4 NAT16-202ENST00000443096 1286 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
PCDHGA1Q9Y5H4 AC006252.1-201ENST00000483834 1101 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
PCDHGA1Q9Y5H4 BEAN1-AS1-201ENST00000564618 533 ntTSL 4 BASIC20.38■□□□□ 0.85
PCDHGA1Q9Y5H4 PLEKHJ1-205ENST00000587394 937 ntTSL 2 BASIC20.38■□□□□ 0.85
PCDHGA1Q9Y5H4 YIF1B-213ENST00000591755 1077 ntTSL 2 BASIC20.38■□□□□ 0.85
PCDHGA1Q9Y5H4 A1BG-201ENST00000263100 1722 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
PCDHGA1Q9Y5H4 GBX2-201ENST00000306318 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
PCDHGA1Q9Y5H4 MAP6D1-201ENST00000318631 2111 ntAPPRIS P2 TSL 1 (best) BASIC20.38■□□□□ 0.85
PCDHGA1Q9Y5H4 MAPK9-206ENST00000425491 2266 ntTSL 5 BASIC20.37■□□□□ 0.85
PCDHGA1Q9Y5H4 OLFM1-202ENST00000277415 1014 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
PCDHGA1Q9Y5H4 ART5-202ENST00000397067 1154 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
PCDHGA1Q9Y5H4 DGCR6L-202ENST00000405465 962 ntTSL 3 BASIC20.37■□□□□ 0.85
PCDHGA1Q9Y5H4 AL121761.1-202ENST00000412571 415 ntTSL 2 BASIC20.37■□□□□ 0.85
PCDHGA1Q9Y5H4 CASP6-205ENST00000505486 538 ntTSL 4 BASIC20.37■□□□□ 0.85
PCDHGA1Q9Y5H4 DEUP1-206ENST00000530273 410 ntTSL 3 BASIC20.37■□□□□ 0.85
PCDHGA1Q9Y5H4 AP003097.1-201ENST00000530657 1135 ntBASIC20.37■□□□□ 0.85
PCDHGA1Q9Y5H4 FAM213B-215ENST00000537325 1096 ntAPPRIS ALT2 TSL 2 BASIC20.37■□□□□ 0.85
PCDHGA1Q9Y5H4 EIF2AK4-209ENST00000560648 687 ntTSL 3 BASIC20.37■□□□□ 0.85
PCDHGA1Q9Y5H4 TIMM50-213ENST00000599794 786 ntTSL 2 BASIC20.37■□□□□ 0.85
PCDHGA1Q9Y5H4 FGF8-207ENST00000618991 856 ntTSL 3 BASIC20.37■□□□□ 0.85
PCDHGA1Q9Y5H4 AC244517.4-202ENST00000624089 484 ntTSL 3 BASIC20.37■□□□□ 0.85
PCDHGA1Q9Y5H4 H2AFX-202ENST00000530167 1614 ntAPPRIS P1 BASIC20.37■□□□□ 0.85
PCDHGA1Q9Y5H4 NPTXR-201ENST00000333039 5784 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
PCDHGA1Q9Y5H4 IKZF1-207ENST00000413698 1808 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
PCDHGA1Q9Y5H4 SIX3-201ENST00000260653 2523 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
PCDHGA1Q9Y5H4 CCS-208ENST00000533244 1430 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
PCDHGA1Q9Y5H4 NECTIN2-202ENST00000252485 2112 ntAPPRIS P3 TSL 1 (best) BASIC20.36■□□□□ 0.85
PCDHGA1Q9Y5H4 MEIS3-201ENST00000331559 2104 ntAPPRIS ALT2 TSL 5 BASIC20.36■□□□□ 0.85
PCDHGA1Q9Y5H4 MSANTD3-207ENST00000622639 1748 ntAPPRIS P1 TSL 3 BASIC20.36■□□□□ 0.85
PCDHGA1Q9Y5H4 RNF19B-203ENST00000373456 2560 ntAPPRIS P3 TSL 1 (best) BASIC20.36■□□□□ 0.85
PCDHGA1Q9Y5H4 RPS14-201ENST00000312037 711 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
PCDHGA1Q9Y5H4 NENF-201ENST00000366988 949 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
PCDHGA1Q9Y5H4 HTT-AS-201ENST00000503893 515 ntTSL 4 BASIC20.36■□□□□ 0.85
PCDHGA1Q9Y5H4 UNC93B4-201ENST00000505679 747 ntBASIC20.36■□□□□ 0.85
PCDHGA1Q9Y5H4 EIF3J-AS1-205ENST00000560750 1093 ntTSL 3 BASIC20.36■□□□□ 0.85
PCDHGA1Q9Y5H4 MAGIX-206ENST00000615626 1057 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
PCDHGA1Q9Y5H4 DBP-201ENST00000222122 2229 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
PCDHGA1Q9Y5H4 HOXD9-201ENST00000249499 1870 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
PCDHGA1Q9Y5H4 AL359710.1-201ENST00000427039 1544 ntTSL 2 BASIC20.36■□□□□ 0.85
PCDHGA1Q9Y5H4 GET4-201ENST00000265857 2090 ntAPPRIS P2 TSL 1 (best) BASIC20.36■□□□□ 0.85
PCDHGA1Q9Y5H4 HMGA2-206ENST00000536545 1788 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
PCDHGA1Q9Y5H4 TMEM64-203ENST00000458549 4997 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
PCDHGA1Q9Y5H4 ASCL2-201ENST00000331289 1852 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
PCDHGA1Q9Y5H4 KATNAL2-208ENST00000592005 1348 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
PCDHGA1Q9Y5H4 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
PCDHGA1Q9Y5H4 BARX2-201ENST00000281437 1813 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
PCDHGA1Q9Y5H4 ANKRD39-201ENST00000393537 976 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
PCDHGA1Q9Y5H4 DNPH1-202ENST00000393987 796 ntTSL 2 BASIC20.35■□□□□ 0.85
PCDHGA1Q9Y5H4 SGO1-AS1-202ENST00000448208 819 ntTSL 3 BASIC20.35■□□□□ 0.85
PCDHGA1Q9Y5H4 CD44-222ENST00000526025 1052 ntTSL 2 BASIC20.35■□□□□ 0.85
PCDHGA1Q9Y5H4 PLK5-204ENST00000588430 900 ntAPPRIS ALT2 TSL 5 BASIC20.35■□□□□ 0.85
PCDHGA1Q9Y5H4 JOSD2-205ENST00000601423 802 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
PCDHGA1Q9Y5H4 ZNF213-208ENST00000576416 2240 ntAPPRIS P1 TSL 2 BASIC20.35■□□□□ 0.85
PCDHGA1Q9Y5H4 HADH-201ENST00000309522 1912 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
PCDHGA1Q9Y5H4 KCNK4-201ENST00000394525 1673 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
PCDHGA1Q9Y5H4 CACNA2D1-203ENST00000423588 1429 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
PCDHGA1Q9Y5H4 PTP4A3-203ENST00000520105 1866 ntTSL 5 BASIC20.35■□□□□ 0.85
PCDHGA1Q9Y5H4 IGFBP1-203ENST00000468955 1369 ntTSL 5 BASIC20.34■□□□□ 0.85
PCDHGA1Q9Y5H4 ZNF784-201ENST00000325351 2021 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
PCDHGA1Q9Y5H4 MAN2C1-244ENST00000618257 1346 ntTSL 5 BASIC20.34■□□□□ 0.85
PCDHGA1Q9Y5H4 BIN1-205ENST00000351659 2365 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
PCDHGA1Q9Y5H4 CDC42EP5-201ENST00000301200 864 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
PCDHGA1Q9Y5H4 CEACAM3-201ENST00000344550 1022 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
PCDHGA1Q9Y5H4 CD99-203ENST00000381184 918 ntAPPRIS ALT2 TSL 5 BASIC20.34■□□□□ 0.85
PCDHGA1Q9Y5H4 LSM12P1-201ENST00000411836 588 ntBASIC20.34■□□□□ 0.85
PCDHGA1Q9Y5H4 UBE2SP1-201ENST00000450587 669 ntBASIC20.34■□□□□ 0.85
PCDHGA1Q9Y5H4 LCN6-203ENST00000476567 1015 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
PCDHGA1Q9Y5H4 LINC01962-201ENST00000513771 411 ntTSL 2 BASIC20.34■□□□□ 0.85
PCDHGA1Q9Y5H4 SPI1-204ENST00000533968 1290 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
PCDHGA1Q9Y5H4 AC089999.2-201ENST00000552525 248 ntTSL 3 BASIC20.34■□□□□ 0.85
PCDHGA1Q9Y5H4 AC016588.1-201ENST00000591533 542 ntTSL 4 BASIC20.34■□□□□ 0.85
PCDHGA1Q9Y5H4 C17orf50-201ENST00000603305 569 ntTSL 3 BASIC20.34■□□□□ 0.85
PCDHGA1Q9Y5H4 C17orf50-203ENST00000605587 1018 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
PCDHGA1Q9Y5H4 APOC3-205ENST00000630701 541 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
PCDHGA1Q9Y5H4 AC073648.6-201ENST00000641589 218 ntBASIC20.34■□□□□ 0.85
PCDHGA1Q9Y5H4 LHPP-202ENST00000368842 1622 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
PCDHGA1Q9Y5H4 SH3GLB2-202ENST00000372559 1365 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 29.2 ms