Protein–RNA interactions for Protein: Q9NUD5

ZCCHC3, Zinc finger CCHC domain-containing protein 3, humanhuman

Known RBP Predictions only

Length 404 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZCCHC3Q9NUD5 CALM1-202ENST00000447653 1104 ntAPPRIS ALT1 TSL 2 BASIC19.85■□□□□ 0.77
ZCCHC3Q9NUD5 C8orf82-201ENST00000313465 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.77
ZCCHC3Q9NUD5 PABPC1L2B-201ENST00000373521 2197 ntAPPRIS P1 BASIC19.85■□□□□ 0.77
ZCCHC3Q9NUD5 BX005040.4-201ENST00000637145 1518 ntBASIC19.85■□□□□ 0.77
ZCCHC3Q9NUD5 CACNA1B-201ENST00000277549 7158 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.77
ZCCHC3Q9NUD5 CACNA1B-202ENST00000277551 7158 ntAPPRIS ALT2 TSL 5 BASIC19.85■□□□□ 0.77
ZCCHC3Q9NUD5 UPF3A-202ENST00000375299 2387 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
ZCCHC3Q9NUD5 PRR7-201ENST00000323249 1480 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
ZCCHC3Q9NUD5 EML2-201ENST00000245925 2264 ntAPPRIS P3 TSL 1 (best) BASIC19.85■□□□□ 0.77
ZCCHC3Q9NUD5 EFHD1-201ENST00000264059 2259 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
ZCCHC3Q9NUD5 AC009014.1-201ENST00000607574 1667 ntAPPRIS P1 BASIC19.84■□□□□ 0.77
ZCCHC3Q9NUD5 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
ZCCHC3Q9NUD5 LRRC75A-203ENST00000470794 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
ZCCHC3Q9NUD5 PROSER2-205ENST00000622831 1646 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
ZCCHC3Q9NUD5 TCF7L1-201ENST00000282111 2968 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
ZCCHC3Q9NUD5 TNFAIP2-209ENST00000560869 4683 ntAPPRIS P1 TSL 5 BASIC19.84■□□□□ 0.77
ZCCHC3Q9NUD5 TTYH1-203ENST00000376531 1763 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
ZCCHC3Q9NUD5 SLC35A3-210ENST00000638371 2298 ntTSL 5 BASIC19.84■□□□□ 0.77
ZCCHC3Q9NUD5 ST8SIA2-201ENST00000268164 5708 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
ZCCHC3Q9NUD5 PBX4-201ENST00000251203 1724 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
ZCCHC3Q9NUD5 DOCK5-208ENST00000481100 2166 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
ZCCHC3Q9NUD5 DUSP2-201ENST00000288943 1688 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
ZCCHC3Q9NUD5 BCKDK-201ENST00000219794 2128 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
ZCCHC3Q9NUD5 POLR2F-205ENST00000442738 2106 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
ZCCHC3Q9NUD5 PDCD2-203ENST00000443345 1897 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
ZCCHC3Q9NUD5 ZNF446-208ENST00000622313 1884 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
ZCCHC3Q9NUD5 PXYLP1-203ENST00000502783 2066 ntTSL 2 BASIC19.83■□□□□ 0.77
ZCCHC3Q9NUD5 OAF-201ENST00000328965 2525 ntAPPRIS P2 TSL 1 (best) BASIC19.83■□□□□ 0.77
ZCCHC3Q9NUD5 MTX2-201ENST00000249442 1364 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
ZCCHC3Q9NUD5 SETD6-202ENST00000310682 2042 ntAPPRIS P3 TSL 2 BASIC19.83■□□□□ 0.77
ZCCHC3Q9NUD5 SLC2A11-202ENST00000316185 1555 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
ZCCHC3Q9NUD5 ZFAND2B-202ENST00000409097 1765 ntTSL 2 BASIC19.83■□□□□ 0.77
ZCCHC3Q9NUD5 LINC00454-202ENST00000430978 1327 ntTSL 5 BASIC19.83■□□□□ 0.77
ZCCHC3Q9NUD5 INAFM2-202ENST00000638170 3052 ntAPPRIS P1 BASIC19.83■□□□□ 0.77
ZCCHC3Q9NUD5 POFUT1-201ENST00000375730 1507 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
ZCCHC3Q9NUD5 AL024507.2-201ENST00000606070 2574 ntBASIC19.83■□□□□ 0.77
ZCCHC3Q9NUD5 CERS1-205ENST00000623927 2558 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
ZCCHC3Q9NUD5 FXYD7-201ENST00000270310 712 ntAPPRIS P2 TSL 1 (best) BASIC19.83■□□□□ 0.77
ZCCHC3Q9NUD5 HBM-201ENST00000356815 506 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
ZCCHC3Q9NUD5 TBR1-202ENST00000410035 1454 ntTSL 2 BASIC19.83■□□□□ 0.76
ZCCHC3Q9NUD5 CBWD3-202ENST00000377342 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.76
ZCCHC3Q9NUD5 AC005224.4-201ENST00000583262 1652 ntBASIC19.83■□□□□ 0.76
ZCCHC3Q9NUD5 COL23A1-201ENST00000390654 3061 ntAPPRIS P2 TSL 5 BASIC19.83■□□□□ 0.76
ZCCHC3Q9NUD5 ZNF784-201ENST00000325351 2021 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
ZCCHC3Q9NUD5 FAM3A-202ENST00000359889 1712 ntAPPRIS P1 TSL 2 BASIC19.82■□□□□ 0.76
ZCCHC3Q9NUD5 HLA-C-201ENST00000376228 1536 ntAPPRIS P2 BASIC19.82■□□□□ 0.76
ZCCHC3Q9NUD5 ZNF668-209ENST00000539836 2469 ntTSL 5 BASIC19.82■□□□□ 0.76
ZCCHC3Q9NUD5 TMC6-212ENST00000589553 2389 ntTSL 2 BASIC19.82■□□□□ 0.76
ZCCHC3Q9NUD5 SIRT3-215ENST00000532956 1235 ntTSL 2 BASIC19.82■□□□□ 0.76
ZCCHC3Q9NUD5 NKX2-2-AS1-201ENST00000549659 638 ntTSL 5 BASIC19.82■□□□□ 0.76
ZCCHC3Q9NUD5 AL390816.2-201ENST00000554252 737 ntTSL 3 BASIC19.82■□□□□ 0.76
ZCCHC3Q9NUD5 RGS20-202ENST00000297313 2104 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
ZCCHC3Q9NUD5 AC055733.4-201ENST00000638462 1354 ntBASIC19.82■□□□□ 0.76
ZCCHC3Q9NUD5 IFNGR2-203ENST00000405436 1684 ntTSL 5 BASIC19.81■□□□□ 0.76
ZCCHC3Q9NUD5 AC133555.3-201ENST00000549950 1693 ntAPPRIS P5 TSL 5 BASIC19.81■□□□□ 0.76
ZCCHC3Q9NUD5 AC106782.1-201ENST00000550538 1693 ntAPPRIS P5 TSL 5 BASIC19.81■□□□□ 0.76
ZCCHC3Q9NUD5 FGFR1-241ENST00000619564 5482 ntTSL 5 BASIC19.81■□□□□ 0.76
ZCCHC3Q9NUD5 MPST-204ENST00000404393 1329 ntTSL 5 BASIC19.81■□□□□ 0.76
ZCCHC3Q9NUD5 CDC42BPB-201ENST00000361246 6758 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
ZCCHC3Q9NUD5 IRX2-201ENST00000302057 2456 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
ZCCHC3Q9NUD5 CCNYL1-202ENST00000339882 2619 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
ZCCHC3Q9NUD5 ZDHHC7-203ENST00000564466 1488 ntTSL 5 BASIC19.81■□□□□ 0.76
ZCCHC3Q9NUD5 MAPK8IP1P2-201ENST00000580257 1472 ntBASIC19.81■□□□□ 0.76
ZCCHC3Q9NUD5 MBNL3-202ENST00000370844 1643 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
ZCCHC3Q9NUD5 IKBKG-206ENST00000594239 2299 ntAPPRIS P3 TSL 1 (best) BASIC19.81■□□□□ 0.76
ZCCHC3Q9NUD5 GLTPD2-201ENST00000331264 1023 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
ZCCHC3Q9NUD5 PRDX4-202ENST00000379341 1005 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
ZCCHC3Q9NUD5 POLR2H-204ENST00000438240 994 ntTSL 3 BASIC19.81■□□□□ 0.76
ZCCHC3Q9NUD5 PTGDR-202ENST00000553372 1216 ntTSL 3 BASIC19.81■□□□□ 0.76
ZCCHC3Q9NUD5 TRAF4-217ENST00000618771 543 ntTSL 5 BASIC19.81■□□□□ 0.76
ZCCHC3Q9NUD5 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
ZCCHC3Q9NUD5 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
ZCCHC3Q9NUD5 CD55-205ENST00000367067 1843 ntAPPRIS ALT2 TSL 5 BASIC19.81■□□□□ 0.76
ZCCHC3Q9NUD5 MXRA8-201ENST00000309212 2273 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
ZCCHC3Q9NUD5 CPNE9-203ENST00000383832 2068 ntAPPRIS P1 TSL 5 BASIC19.8■□□□□ 0.76
ZCCHC3Q9NUD5 CDK18-203ENST00000429964 1648 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
ZCCHC3Q9NUD5 RUSC1-AS1-203ENST00000450199 1636 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
ZCCHC3Q9NUD5 ELOA3B-201ENST00000611323 1641 ntAPPRIS P1 BASIC19.8■□□□□ 0.76
ZCCHC3Q9NUD5 ELOA3D-201ENST00000620881 1641 ntAPPRIS P1 BASIC19.8■□□□□ 0.76
ZCCHC3Q9NUD5 HABP4-201ENST00000375249 2615 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
ZCCHC3Q9NUD5 CIZ1-206ENST00000372954 2731 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
ZCCHC3Q9NUD5 BCL11B-203ENST00000443726 2599 ntAPPRIS ALT2 TSL 5 BASIC19.8■□□□□ 0.76
ZCCHC3Q9NUD5 UBALD1-201ENST00000283474 1413 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
ZCCHC3Q9NUD5 NXT1-201ENST00000254998 1123 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
ZCCHC3Q9NUD5 FXN-202ENST00000396364 980 ntTSL 5 BASIC19.8■□□□□ 0.76
ZCCHC3Q9NUD5 STOML2-202ENST00000452248 1296 ntTSL 2 BASIC19.8■□□□□ 0.76
ZCCHC3Q9NUD5 AC012414.1-201ENST00000556676 535 ntBASIC19.8■□□□□ 0.76
ZCCHC3Q9NUD5 STOML2-205ENST00000619795 1293 ntTSL 3 BASIC19.8■□□□□ 0.76
ZCCHC3Q9NUD5 PRR20B-201ENST00000377930 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
ZCCHC3Q9NUD5 PRR20A-201ENST00000377931 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
ZCCHC3Q9NUD5 FAHD1-202ENST00000382668 1845 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
ZCCHC3Q9NUD5 C10orf91-202ENST00000392630 1846 ntTSL 2 BASIC19.8■□□□□ 0.76
ZCCHC3Q9NUD5 PRR20E-201ENST00000434815 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
ZCCHC3Q9NUD5 PRR20D-201ENST00000452123 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
ZCCHC3Q9NUD5 PRR20C-201ENST00000544357 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
ZCCHC3Q9NUD5 PRR20C-202ENST00000614894 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
ZCCHC3Q9NUD5 E2F1-201ENST00000343380 2503 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
ZCCHC3Q9NUD5 CXCL16-203ENST00000574412 1668 ntAPPRIS P2 TSL 1 (best) BASIC19.8■□□□□ 0.76
ZCCHC3Q9NUD5 KCNN4-201ENST00000262888 2240 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
ZCCHC3Q9NUD5 ERLEC1-203ENST00000405123 1756 ntTSL 5 BASIC19.8■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 35.3 ms