Protein–RNA interactions for Protein: Q9NRR8

CDC42SE1, CDC42 small effector protein 1, humanhuman

Predictions only

Length 79 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDC42SE1Q9NRR8 CXCL16-201ENST00000293778 2222 ntAPPRIS P2 TSL 1 (best) BASIC10.97□□□□□ -0.65
CDC42SE1Q9NRR8 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC10.97□□□□□ -0.65
CDC42SE1Q9NRR8 SLC6A9-202ENST00000360584 2330 ntTSL 1 (best) BASIC10.97□□□□□ -0.65
CDC42SE1Q9NRR8 TEAD2-202ENST00000377214 2440 ntAPPRIS ALT1 TSL 2 BASIC10.97□□□□□ -0.65
CDC42SE1Q9NRR8 SHISA6-202ENST00000409168 7262 ntAPPRIS ALT2 TSL 1 (best) BASIC10.97□□□□□ -0.65
CDC42SE1Q9NRR8 ZBTB47-202ENST00000505904 2456 ntTSL 5 BASIC10.97□□□□□ -0.65
CDC42SE1Q9NRR8 TNFAIP2-201ENST00000333007 4175 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.65
CDC42SE1Q9NRR8 ATPAF1-214ENST00000576409 4158 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.65
CDC42SE1Q9NRR8 NAA35-201ENST00000361671 2649 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.65
CDC42SE1Q9NRR8 CRMP1-202ENST00000397890 2911 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.65
CDC42SE1Q9NRR8 DMWD-201ENST00000270223 3305 ntAPPRIS P2 TSL 1 (best) BASIC10.97□□□□□ -0.65
CDC42SE1Q9NRR8 ALDH1A3-201ENST00000329841 3924 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.65
CDC42SE1Q9NRR8 GPR135-201ENST00000395116 4578 ntAPPRIS P1 BASIC10.97□□□□□ -0.65
CDC42SE1Q9NRR8 INPP4A-203ENST00000409463 1565 ntTSL 1 (best) BASIC10.97□□□□□ -0.65
CDC42SE1Q9NRR8 LYRM1-201ENST00000219168 1626 ntAPPRIS P1 TSL 2 BASIC10.97□□□□□ -0.65
CDC42SE1Q9NRR8 SYT7-202ENST00000535826 1621 ntTSL 5 BASIC10.97□□□□□ -0.65
CDC42SE1Q9NRR8 MAP2K2-201ENST00000262948 1734 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.65
CDC42SE1Q9NRR8 DOK4-218ENST00000569548 1848 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.65
CDC42SE1Q9NRR8 ADAMTS18-201ENST00000282849 5913 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.65
CDC42SE1Q9NRR8 RBKS-201ENST00000302188 1973 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.65
CDC42SE1Q9NRR8 ZNF513-202ENST00000407879 2077 ntTSL 1 (best) BASIC10.97□□□□□ -0.65
CDC42SE1Q9NRR8 KLF6-204ENST00000469435 2169 ntTSL 1 (best) BASIC10.97□□□□□ -0.65
CDC42SE1Q9NRR8 AC068446.2-201ENST00000500487 2165 ntTSL 2 BASIC10.97□□□□□ -0.65
CDC42SE1Q9NRR8 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC10.97□□□□□ -0.65
CDC42SE1Q9NRR8 APH1A-202ENST00000360244 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC10.97□□□□□ -0.65
CDC42SE1Q9NRR8 MAFF-207ENST00000538999 2365 ntTSL 2 BASIC10.97□□□□□ -0.65
CDC42SE1Q9NRR8 STMN3-202ENST00000540534 2351 ntTSL 2 BASIC10.97□□□□□ -0.65
CDC42SE1Q9NRR8 EML2-220ENST00000589876 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC10.97□□□□□ -0.65
CDC42SE1Q9NRR8 AC112907.3-201ENST00000577781 2400 ntBASIC10.97□□□□□ -0.65
CDC42SE1Q9NRR8 PTRH1-204ENST00000419060 2692 ntAPPRIS P1 TSL 2 BASIC10.97□□□□□ -0.65
CDC42SE1Q9NRR8 RAN-212ENST00000543796 2661 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.65
CDC42SE1Q9NRR8 GTPBP2-202ENST00000307126 2933 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.65
CDC42SE1Q9NRR8 ARHGAP6-202ENST00000337414 5117 ntAPPRIS P4 TSL 1 (best) BASIC10.97□□□□□ -0.65
CDC42SE1Q9NRR8 KDSR-202ENST00000406396 5447 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.65
CDC42SE1Q9NRR8 ASTN2-202ENST00000313400 4747 ntAPPRIS ALT2 TSL 5 BASIC10.96□□□□□ -0.65
CDC42SE1Q9NRR8 SRF-201ENST00000265354 4202 ntAPPRIS P1 TSL 1 (best) BASIC10.96□□□□□ -0.65
CDC42SE1Q9NRR8 TINCR-201ENST00000448587 3733 ntAPPRIS P1 TSL 1 (best) BASIC10.96□□□□□ -0.65
CDC42SE1Q9NRR8 KSR1-201ENST00000268763 2806 ntAPPRIS ALT2 TSL 5 BASIC10.96□□□□□ -0.65
CDC42SE1Q9NRR8 AL158151.1-201ENST00000372490 2047 ntTSL 2 BASIC10.96□□□□□ -0.65
CDC42SE1Q9NRR8 COL8A2-203ENST00000481785 2036 ntTSL 1 (best) BASIC10.96□□□□□ -0.65
CDC42SE1Q9NRR8 RITA1-202ENST00000549621 2041 ntAPPRIS P1 TSL 2 BASIC10.96□□□□□ -0.65
CDC42SE1Q9NRR8 PDE9A-206ENST00000380328 1875 ntTSL 1 (best) BASIC10.96□□□□□ -0.65
CDC42SE1Q9NRR8 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC10.96□□□□□ -0.65
CDC42SE1Q9NRR8 CNTNAP3-204ENST00000377656 4986 ntTSL 1 (best) BASIC10.96□□□□□ -0.65
CDC42SE1Q9NRR8 GFOD1-203ENST00000379287 8751 ntAPPRIS P1 TSL 1 (best) BASIC10.96□□□□□ -0.65
CDC42SE1Q9NRR8 GJA3-201ENST00000241125 5211 ntAPPRIS P1 TSL 3 BASIC10.96□□□□□ -0.66
CDC42SE1Q9NRR8 KANSL2-212ENST00000550347 2714 ntTSL 1 (best) BASIC10.96□□□□□ -0.66
CDC42SE1Q9NRR8 MTMR14-201ENST00000296003 2494 ntAPPRIS P4 TSL 1 (best) BASIC10.96□□□□□ -0.66
CDC42SE1Q9NRR8 ACAP3-202ENST00000354700 3896 ntAPPRIS P1 TSL 1 (best) BASIC10.96□□□□□ -0.66
CDC42SE1Q9NRR8 TMEM53-202ENST00000372237 2310 ntAPPRIS P1 TSL 1 (best) BASIC10.96□□□□□ -0.66
CDC42SE1Q9NRR8 TNIP1-205ENST00000518977 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC10.96□□□□□ -0.66
CDC42SE1Q9NRR8 IRGQ-205ENST00000602269 2210 ntAPPRIS P1 TSL 1 (best) BASIC10.96□□□□□ -0.66
CDC42SE1Q9NRR8 HSD11B1L-217ENST00000581521 1884 ntAPPRIS P3 TSL 5 BASIC10.95□□□□□ -0.66
CDC42SE1Q9NRR8 AKT1S1-207ENST00000391835 3075 ntTSL 1 (best) BASIC10.95□□□□□ -0.66
CDC42SE1Q9NRR8 PHOSPHO1-201ENST00000310544 1816 ntAPPRIS P1 TSL 2 BASIC10.95□□□□□ -0.66
CDC42SE1Q9NRR8 MROH6-202ENST00000524906 1794 ntAPPRIS ALT2 TSL 3 BASIC10.95□□□□□ -0.66
CDC42SE1Q9NRR8 ARID1A-205ENST00000457599 6268 ntAPPRIS ALT2 TSL 5 BASIC10.95□□□□□ -0.66
CDC42SE1Q9NRR8 PSMD7-201ENST00000219313 1670 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
CDC42SE1Q9NRR8 DXO-201ENST00000337523 1628 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
CDC42SE1Q9NRR8 PCMT1-202ENST00000367380 1628 ntTSL 2 BASIC10.95□□□□□ -0.66
CDC42SE1Q9NRR8 PCMT1-211ENST00000544496 1628 ntTSL 2 BASIC10.95□□□□□ -0.66
CDC42SE1Q9NRR8 ZNF784-202ENST00000591479 1559 ntTSL 1 (best) BASIC10.95□□□□□ -0.66
CDC42SE1Q9NRR8 COL9A3-201ENST00000343916 2485 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
CDC42SE1Q9NRR8 STIM2-211ENST00000639195 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC10.95□□□□□ -0.66
CDC42SE1Q9NRR8 TRA2A-202ENST00000392502 2229 ntAPPRIS ALT2 TSL 2 BASIC10.95□□□□□ -0.66
CDC42SE1Q9NRR8 MST1L-201ENST00000442552 2185 ntBASIC10.95□□□□□ -0.66
CDC42SE1Q9NRR8 TAF15-215ENST00000605844 2191 ntAPPRIS P3 TSL 1 (best) BASIC10.95□□□□□ -0.66
CDC42SE1Q9NRR8 EGLN2-201ENST00000303961 2102 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
CDC42SE1Q9NRR8 LDLRAP1-201ENST00000374338 2940 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
CDC42SE1Q9NRR8 CDKN2C-203ENST00000396148 2086 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
CDC42SE1Q9NRR8 TJP1-212ENST00000614355 6977 ntAPPRIS ALT2 TSL 5 BASIC10.95□□□□□ -0.66
CDC42SE1Q9NRR8 EEF1A2-201ENST00000217182 2006 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
CDC42SE1Q9NRR8 RBBP7-202ENST00000380084 2036 ntTSL 2 BASIC10.95□□□□□ -0.66
CDC42SE1Q9NRR8 ADSSL1-202ENST00000332972 1969 ntTSL 1 (best) BASIC10.95□□□□□ -0.66
CDC42SE1Q9NRR8 CDKN1B-201ENST00000228872 2657 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
CDC42SE1Q9NRR8 UHRF1-203ENST00000615884 2651 ntAPPRIS P1 TSL 2 BASIC10.95□□□□□ -0.66
CDC42SE1Q9NRR8 TP53BP2-202ENST00000391878 4741 ntTSL 1 (best) BASIC10.95□□□□□ -0.66
CDC42SE1Q9NRR8 SUSD1-204ENST00000374270 3124 ntAPPRIS P3 TSL 1 (best) BASIC10.95□□□□□ -0.66
CDC42SE1Q9NRR8 CYP2A13-201ENST00000330436 1739 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
CDC42SE1Q9NRR8 DOK3-202ENST00000357198 1729 ntTSL 2 BASIC10.95□□□□□ -0.66
CDC42SE1Q9NRR8 SUGCT-201ENST00000335693 1645 ntAPPRIS ALT2 TSL 1 (best) BASIC10.95□□□□□ -0.66
CDC42SE1Q9NRR8 LRRC14B-201ENST00000328278 1573 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
CDC42SE1Q9NRR8 CTSH-201ENST00000220166 2190 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
CDC42SE1Q9NRR8 CYTH1-209ENST00000589296 2159 ntTSL 5 BASIC10.94□□□□□ -0.66
CDC42SE1Q9NRR8 PCSK7-201ENST00000320934 4649 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
CDC42SE1Q9NRR8 MPV17L-201ENST00000287594 5820 ntTSL 1 (best) BASIC10.94□□□□□ -0.66
CDC42SE1Q9NRR8 CCNJL-203ENST00000393977 3320 ntTSL 1 (best) BASIC10.94□□□□□ -0.66
CDC42SE1Q9NRR8 UBAP1-204ENST00000625521 2029 ntTSL 2 BASIC10.94□□□□□ -0.66
CDC42SE1Q9NRR8 ADGRB2-202ENST00000373658 5414 ntAPPRIS ALT2 TSL 5 BASIC10.94□□□□□ -0.66
CDC42SE1Q9NRR8 ANKRD9-205ENST00000560748 1413 ntAPPRIS P1 TSL 2 BASIC10.94□□□□□ -0.66
CDC42SE1Q9NRR8 SCD5-201ENST00000273908 1995 ntTSL 2 BASIC10.94□□□□□ -0.66
CDC42SE1Q9NRR8 ASB1-201ENST00000264607 6994 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
CDC42SE1Q9NRR8 MGAT4B-201ENST00000292591 2446 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
CDC42SE1Q9NRR8 CDK17-203ENST00000543119 2442 ntTSL 2 BASIC10.94□□□□□ -0.66
CDC42SE1Q9NRR8 ARSA-202ENST00000356098 1895 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
CDC42SE1Q9NRR8 UBAC1-201ENST00000371756 1867 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
CDC42SE1Q9NRR8 PCDHB18P-201ENST00000524813 2368 ntBASIC10.94□□□□□ -0.66
CDC42SE1Q9NRR8 PRR36-202ENST00000618550 4456 ntAPPRIS P2 TSL 5 BASIC10.94□□□□□ -0.66
CDC42SE1Q9NRR8 PDZD8-201ENST00000334464 9699 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
CDC42SE1Q9NRR8 GRK3-203ENST00000619906 2873 ntTSL 5 BASIC10.94□□□□□ -0.66
Retrieved 100 of 98,524 protein–RNA pairs in 20.7 ms