Protein–RNA interactions for Protein: Q9GZT3

SLIRP, SRA stem-loop-interacting RNA-binding protein, mitochondrial, humanhuman

Known RBP Predictions only

Length 109 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLIRPQ9GZT3 MYDGF-201ENST00000262947 1018 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SLIRPQ9GZT3 CMC4-202ENST00000369484 1107 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SLIRPQ9GZT3 ENDOG-201ENST00000372642 1172 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SLIRPQ9GZT3 POLD2-201ENST00000223361 1597 ntTSL 5 BASIC18.66■□□□□ 0.58
SLIRPQ9GZT3 MAP1LC3A-201ENST00000360668 1574 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SLIRPQ9GZT3 KRT18-201ENST00000388835 1562 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SLIRPQ9GZT3 RCN3-201ENST00000270645 1859 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SLIRPQ9GZT3 LYPD1-202ENST00000397463 1891 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SLIRPQ9GZT3 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC18.66■□□□□ 0.58
SLIRPQ9GZT3 LINC00304-201ENST00000321214 2243 ntTSL 2 BASIC18.66■□□□□ 0.58
SLIRPQ9GZT3 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC18.66■□□□□ 0.58
SLIRPQ9GZT3 DUSP2-201ENST00000288943 1688 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SLIRPQ9GZT3 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC18.66■□□□□ 0.58
SLIRPQ9GZT3 LSM12-201ENST00000293406 2308 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SLIRPQ9GZT3 RTN4-201ENST00000317610 2333 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
SLIRPQ9GZT3 KCNH2-202ENST00000330883 3267 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
SLIRPQ9GZT3 EGFL7-201ENST00000308874 1747 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SLIRPQ9GZT3 NR2F2-204ENST00000453270 1712 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
SLIRPQ9GZT3 UBALD1-201ENST00000283474 1413 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SLIRPQ9GZT3 CHP2-201ENST00000300113 2382 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SLIRPQ9GZT3 SEPT2-203ENST00000391971 3315 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SLIRPQ9GZT3 GPAA1-201ENST00000355091 2078 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
SLIRPQ9GZT3 CRLF1-201ENST00000392386 1792 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
SLIRPQ9GZT3 GAL3ST3-201ENST00000312006 2133 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
SLIRPQ9GZT3 C3orf18-203ENST00000426034 2486 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
SLIRPQ9GZT3 KLC1-219ENST00000555836 2467 ntTSL 5 BASIC18.65■□□□□ 0.58
SLIRPQ9GZT3 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
SLIRPQ9GZT3 PCBP3-206ENST00000400314 2202 ntAPPRIS P2 TSL 5 BASIC18.65■□□□□ 0.58
SLIRPQ9GZT3 PLPP1-202ENST00000307259 1597 ntAPPRIS ALT1 TSL 1 (best) BASIC18.65■□□□□ 0.58
SLIRPQ9GZT3 HERC2P8-204ENST00000567073 1988 ntTSL 5 BASIC18.65■□□□□ 0.58
SLIRPQ9GZT3 SNUPN-207ENST00000567134 1641 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
SLIRPQ9GZT3 PKIG-207ENST00000372894 1191 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
SLIRPQ9GZT3 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC18.65■□□□□ 0.58
SLIRPQ9GZT3 ZKSCAN7-205ENST00000426540 2791 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
SLIRPQ9GZT3 TANGO2-217ENST00000456048 2439 ntTSL 2 BASIC18.65■□□□□ 0.58
SLIRPQ9GZT3 ARHGAP9-202ENST00000393797 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
SLIRPQ9GZT3 ZNF213-202ENST00000416391 2996 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
SLIRPQ9GZT3 ZBTB25-202ENST00000555220 1440 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
SLIRPQ9GZT3 FGFR2-204ENST00000356226 3547 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
SLIRPQ9GZT3 MRPS2-202ENST00000371785 1640 ntAPPRIS P1 TSL 3 BASIC18.64■□□□□ 0.57
SLIRPQ9GZT3 SERBP1-201ENST00000361219 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC18.64■□□□□ 0.57
SLIRPQ9GZT3 FAM69B-202ENST00000371692 1668 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
SLIRPQ9GZT3 RAX-202ENST00000334889 3197 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
SLIRPQ9GZT3 AC007249.2-201ENST00000553181 1737 ntTSL 5 BASIC18.64■□□□□ 0.57
SLIRPQ9GZT3 MBD3-207ENST00000590550 2782 ntTSL 2 BASIC18.64■□□□□ 0.57
SLIRPQ9GZT3 STIM2-211ENST00000639195 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
SLIRPQ9GZT3 WASH6P-203ENST00000460206 1826 ntTSL 5 BASIC18.64■□□□□ 0.57
SLIRPQ9GZT3 COMMD5-201ENST00000305103 1373 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
SLIRPQ9GZT3 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
SLIRPQ9GZT3 REST-206ENST00000612429 1376 ntTSL 5 BASIC18.64■□□□□ 0.57
SLIRPQ9GZT3 REST-207ENST00000616975 1370 ntTSL 5 BASIC18.64■□□□□ 0.57
SLIRPQ9GZT3 REST-212ENST00000640343 1352 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
SLIRPQ9GZT3 OLIG3-201ENST00000367734 2049 ntAPPRIS P1 BASIC18.64■□□□□ 0.57
SLIRPQ9GZT3 ERF-202ENST00000440177 2032 ntTSL 2 BASIC18.64■□□□□ 0.57
SLIRPQ9GZT3 AMZ2-219ENST00000612294 1498 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
SLIRPQ9GZT3 TMEM44-203ENST00000381975 2197 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
SLIRPQ9GZT3 SPNS1-201ENST00000311008 2208 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
SLIRPQ9GZT3 CALY-201ENST00000252939 2271 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
SLIRPQ9GZT3 FAM213A-202ENST00000372185 1723 ntTSL 2 BASIC18.63■□□□□ 0.57
SLIRPQ9GZT3 ARHGAP11A-208ENST00000567348 2422 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
SLIRPQ9GZT3 RXFP3-201ENST00000330120 1852 ntAPPRIS P1 BASIC18.63■□□□□ 0.57
SLIRPQ9GZT3 CCNJ-203ENST00000465148 2677 ntAPPRIS P1 TSL 2 BASIC18.63■□□□□ 0.57
SLIRPQ9GZT3 AC245041.2-204ENST00000610809 1962 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
SLIRPQ9GZT3 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC18.63■□□□□ 0.57
SLIRPQ9GZT3 FXYD7-204ENST00000588265 636 ntTSL 2 BASIC18.63■□□□□ 0.57
SLIRPQ9GZT3 SRP68-213ENST00000629930 165 ntTSL 5 BASIC18.63■□□□□ 0.57
SLIRPQ9GZT3 AC018553.2-201ENST00000637770 1064 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
SLIRPQ9GZT3 ABLIM2-204ENST00000407564 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
SLIRPQ9GZT3 NETO1-207ENST00000583169 2357 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
SLIRPQ9GZT3 SLC12A5-210ENST00000616202 2445 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
SLIRPQ9GZT3 HLA-C-203ENST00000383329 1554 ntAPPRIS ALT2 BASIC18.63■□□□□ 0.57
SLIRPQ9GZT3 HDHD5-201ENST00000155674 1735 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
SLIRPQ9GZT3 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC18.63■□□□□ 0.57
SLIRPQ9GZT3 KCTD18-201ENST00000359878 2940 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
SLIRPQ9GZT3 NAAA-201ENST00000286733 1900 ntAPPRIS P2 TSL 5 BASIC18.62■□□□□ 0.57
SLIRPQ9GZT3 TFEB-211ENST00000420312 1996 ntTSL 5 BASIC18.62■□□□□ 0.57
SLIRPQ9GZT3 OSCAR-208ENST00000611261 2061 ntAPPRIS P4 TSL 5 BASIC18.62■□□□□ 0.57
SLIRPQ9GZT3 LHX9-206ENST00000561173 2144 ntTSL 5 BASIC18.62■□□□□ 0.57
SLIRPQ9GZT3 DET1-207ENST00000564406 2315 ntTSL 2 BASIC18.62■□□□□ 0.57
SLIRPQ9GZT3 LHX3-202ENST00000371748 2365 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
SLIRPQ9GZT3 HTRA3-201ENST00000307358 2541 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SLIRPQ9GZT3 HOXB9-201ENST00000311177 2581 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SLIRPQ9GZT3 HSPB11-201ENST00000194214 915 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SLIRPQ9GZT3 MMP25-AS1-209ENST00000576250 779 ntTSL 5 BASIC18.62■□□□□ 0.57
SLIRPQ9GZT3 LINC01233-202ENST00000598832 568 ntTSL 2 BASIC18.62■□□□□ 0.57
SLIRPQ9GZT3 CENPS-CORT-201ENST00000400900 1469 ntTSL 2 BASIC18.62■□□□□ 0.57
SLIRPQ9GZT3 ASGR1-208ENST00000574388 1552 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
SLIRPQ9GZT3 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC18.62■□□□□ 0.57
SLIRPQ9GZT3 AC133555.3-201ENST00000549950 1693 ntAPPRIS P5 TSL 5 BASIC18.62■□□□□ 0.57
SLIRPQ9GZT3 AC106782.1-201ENST00000550538 1693 ntAPPRIS P5 TSL 5 BASIC18.62■□□□□ 0.57
SLIRPQ9GZT3 TANGO2-202ENST00000398042 2011 ntTSL 2 BASIC18.62■□□□□ 0.57
SLIRPQ9GZT3 HTRA4-201ENST00000302495 2095 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SLIRPQ9GZT3 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC18.62■□□□□ 0.57
SLIRPQ9GZT3 AL390879.2-201ENST00000424306 2222 ntTSL 2 BASIC18.62■□□□□ 0.57
SLIRPQ9GZT3 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SLIRPQ9GZT3 IDH1-205ENST00000446179 2298 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SLIRPQ9GZT3 PAQR4-203ENST00000572687 2251 ntTSL 2 BASIC18.62■□□□□ 0.57
SLIRPQ9GZT3 LARGE2-206ENST00000529052 2459 ntAPPRIS ALT2 TSL 2 BASIC18.62■□□□□ 0.57
SLIRPQ9GZT3 CADPS-202ENST00000357948 5190 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
SLIRPQ9GZT3 IGDCC4-201ENST00000352385 6508 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 40.7 ms