Protein–RNA interactions for Protein: P62310

LSM3, U6 snRNA-associated Sm-like protein LSm3, humanhuman

Known RBP Predictions only

Length 102 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LSM3P62310 SIRT7-201ENST00000328666 1743 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
LSM3P62310 CCKBR-206ENST00000532715 1734 ntTSL 3 BASIC19.03■□□□□ 0.64
LSM3P62310 CCDC106-207ENST00000591578 1592 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
LSM3P62310 MT2A-201ENST00000245185 786 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
LSM3P62310 CARMIL1-202ENST00000461945 1290 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
LSM3P62310 CDAN1-201ENST00000356231 4637 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
LSM3P62310 SDHAF3-202ENST00000432641 2060 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
LSM3P62310 TMED4-203ENST00000457408 2322 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
LSM3P62310 IKBKG-212ENST00000617207 1949 ntAPPRIS ALT1 TSL 3 BASIC19.03■□□□□ 0.64
LSM3P62310 DNAAF3-201ENST00000391720 2169 ntAPPRIS P3 TSL 2 BASIC19.03■□□□□ 0.64
LSM3P62310 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC19.03■□□□□ 0.64
LSM3P62310 ZNF12-201ENST00000342651 2921 ntAPPRIS ALT2 TSL 2 BASIC19.03■□□□□ 0.64
LSM3P62310 TBC1D4-201ENST00000377625 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
LSM3P62310 GNA15-201ENST00000262958 2133 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
LSM3P62310 FAM206A-201ENST00000322940 2134 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
LSM3P62310 KANK4-202ENST00000354381 2103 ntTSL 2 BASIC19.03■□□□□ 0.64
LSM3P62310 SYNC-201ENST00000373484 1824 ntAPPRIS ALT2 TSL 2 BASIC19.02■□□□□ 0.64
LSM3P62310 GPC1-202ENST00000420138 1835 ntTSL 5 BASIC19.02■□□□□ 0.64
LSM3P62310 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC19.02■□□□□ 0.64
LSM3P62310 FASTK-212ENST00000482571 1764 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
LSM3P62310 CITED2-203ENST00000537332 1780 ntTSL 3 BASIC19.02■□□□□ 0.64
LSM3P62310 MACROD1-201ENST00000255681 1205 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
LSM3P62310 PMPCB-202ENST00000428154 1714 ntTSL 1 (best) BASIC19.02■□□□□ 0.63
LSM3P62310 SCRN2-212ENST00000584123 1745 ntTSL 1 (best) BASIC19.02■□□□□ 0.63
LSM3P62310 UHRF1-203ENST00000615884 2651 ntAPPRIS P1 TSL 2 BASIC19.02■□□□□ 0.63
LSM3P62310 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC19.02■□□□□ 0.63
LSM3P62310 ADAM33-203ENST00000379861 3674 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.63
LSM3P62310 NUDT16L1-202ENST00000405142 2040 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
LSM3P62310 TPCN2-205ENST00000542467 2000 ntTSL 2 BASIC19.01■□□□□ 0.63
LSM3P62310 TMEM178A-201ENST00000281961 1662 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
LSM3P62310 ZNF281-202ENST00000367352 2933 ntAPPRIS ALT2 TSL 2 BASIC19.01■□□□□ 0.63
LSM3P62310 POLE2-202ENST00000539565 1792 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
LSM3P62310 SPHK1-203ENST00000545180 2238 ntAPPRIS P3 TSL 2 BASIC19.01■□□□□ 0.63
LSM3P62310 DNAAF3-202ENST00000455045 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
LSM3P62310 UBA5-208ENST00000473651 1513 ntTSL 5 BASIC19.01■□□□□ 0.63
LSM3P62310 CAPN1-226ENST00000533820 3083 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
LSM3P62310 LGALS9B-201ENST00000324290 1243 ntAPPRIS P2 TSL 5 BASIC19.01■□□□□ 0.63
LSM3P62310 MPC1-201ENST00000341756 976 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
LSM3P62310 DUX4L9-201ENST00000449051 1259 ntBASIC19.01■□□□□ 0.63
LSM3P62310 MPC1-206ENST00000621630 977 ntAPPRIS ALT1 TSL 5 BASIC19.01■□□□□ 0.63
LSM3P62310 MPC1-207ENST00000621685 1192 ntTSL 5 BASIC19.01■□□□□ 0.63
LSM3P62310 RARG-201ENST00000338561 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC19.01■□□□□ 0.63
LSM3P62310 SPOPL-201ENST00000280098 6025 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
LSM3P62310 COMMD5-201ENST00000305103 1373 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
LSM3P62310 MYO1D-213ENST00000583621 1916 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
LSM3P62310 FP325331.1-202ENST00000623531 1380 ntBASIC19.01■□□□□ 0.63
LSM3P62310 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
LSM3P62310 SP3-208ENST00000640958 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
LSM3P62310 TRPC1-203ENST00000476941 3061 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
LSM3P62310 CEP78-202ENST00000376597 2618 ntAPPRIS P4 TSL 1 (best) BASIC19.01■□□□□ 0.63
LSM3P62310 PQLC2-201ENST00000375153 2153 ntAPPRIS P1 TSL 2 BASIC19■□□□□ 0.63
LSM3P62310 STMN3-201ENST00000370053 2255 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
LSM3P62310 CFP-202ENST00000377005 1435 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
LSM3P62310 PABPC4-204ENST00000372862 2470 ntTSL 5 BASIC19■□□□□ 0.63
LSM3P62310 C19orf12-207ENST00000592153 1504 ntTSL 1 (best) BASIC19■□□□□ 0.63
LSM3P62310 CERS5-203ENST00000422340 2855 ntAPPRIS ALT2 TSL 2 BASIC19■□□□□ 0.63
LSM3P62310 BYSL-201ENST00000230340 2029 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
LSM3P62310 SH2B1-202ENST00000337120 6043 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
LSM3P62310 TNFRSF4-201ENST00000379236 1068 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
LSM3P62310 AC092807.3-205ENST00000467666 531 ntTSL 3 BASIC19■□□□□ 0.63
LSM3P62310 R3HDM4-208ENST00000626716 138 ntTSL 5 BASIC19■□□□□ 0.63
LSM3P62310 REST-206ENST00000612429 1376 ntTSL 5 BASIC19■□□□□ 0.63
LSM3P62310 REST-207ENST00000616975 1370 ntTSL 5 BASIC19■□□□□ 0.63
LSM3P62310 REST-212ENST00000640343 1352 ntTSL 1 (best) BASIC19■□□□□ 0.63
LSM3P62310 DHRS11-215ENST00000618403 1598 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
LSM3P62310 ESRRA-202ENST00000405666 2283 ntAPPRIS P3 TSL 1 (best) BASIC19■□□□□ 0.63
LSM3P62310 ACTR5-201ENST00000243903 2565 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
LSM3P62310 ASPHD2-201ENST00000215906 3357 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
LSM3P62310 GATAD1-201ENST00000287957 3361 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
LSM3P62310 KCTD18-201ENST00000359878 2940 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
LSM3P62310 AC112907.3-201ENST00000577781 2400 ntBASIC19■□□□□ 0.63
LSM3P62310 BCKDK-201ENST00000219794 2128 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
LSM3P62310 TMEM51-203ENST00000400796 1842 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
LSM3P62310 DENND1A-203ENST00000373624 5010 ntAPPRIS P4 TSL 5 BASIC18.99■□□□□ 0.63
LSM3P62310 PPFIA1-202ENST00000389547 4133 ntAPPRIS ALT1 TSL 1 (best) BASIC18.99■□□□□ 0.63
LSM3P62310 HMGA1-205ENST00000447654 2159 ntAPPRIS P4 TSL 1 (best) BASIC18.99■□□□□ 0.63
LSM3P62310 CENPU-201ENST00000281453 1998 ntAPPRIS P2 TSL 1 (best) BASIC18.99■□□□□ 0.63
LSM3P62310 RNF38-205ENST00000377877 1974 ntTSL 2 BASIC18.99■□□□□ 0.63
LSM3P62310 SPIRE2-201ENST00000378247 3235 ntAPPRIS P2 TSL 1 (best) BASIC18.99■□□□□ 0.63
LSM3P62310 LARGE2-202ENST00000401752 2516 ntAPPRIS P3 TSL 1 (best) BASIC18.99■□□□□ 0.63
LSM3P62310 TMEM235-201ENST00000374946 2409 ntTSL 5 BASIC18.99■□□□□ 0.63
LSM3P62310 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC18.99■□□□□ 0.63
LSM3P62310 APOE-201ENST00000252486 1208 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
LSM3P62310 ASB1-202ENST00000409297 878 ntTSL 5 BASIC18.99■□□□□ 0.63
LSM3P62310 FGF14-IT1-202ENST00000607251 2123 ntTSL 2 BASIC18.99■□□□□ 0.63
LSM3P62310 UPF1-201ENST00000262803 5348 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
LSM3P62310 DUSP26-201ENST00000256261 1835 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
LSM3P62310 CHD1L-201ENST00000361293 2484 ntTSL 2 BASIC18.99■□□□□ 0.63
LSM3P62310 HSPD1-202ENST00000388968 2455 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
LSM3P62310 CBWD3-213ENST00000618217 1611 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
LSM3P62310 OGG1-202ENST00000302008 2191 ntAPPRIS ALT2 TSL 5 BASIC18.99■□□□□ 0.63
LSM3P62310 ZNF213-202ENST00000416391 2996 ntAPPRIS P1 TSL 5 BASIC18.99■□□□□ 0.63
LSM3P62310 PFKFB3-216ENST00000625260 1752 ntAPPRIS ALT1 TSL 5 BASIC18.98■□□□□ 0.63
LSM3P62310 DOK1-201ENST00000233668 2555 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
LSM3P62310 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC18.98■□□□□ 0.63
LSM3P62310 CYP2A7-202ENST00000301146 2281 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
LSM3P62310 BACE2-202ENST00000330333 2993 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
LSM3P62310 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC18.98■□□□□ 0.63
LSM3P62310 UBE2N-201ENST00000318066 5186 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
LSM3P62310 AC044802.1-201ENST00000501143 2894 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 26 ms