Protein–RNA interactions for Protein: O75533

SF3B1, Splicing factor 3B subunit 1, humanhuman

Known RBP eCLIP

Length 1,304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1O75533 HNRNPD-203ENST00000353341 1585 ntAPPRIS ALT1 TSL 1 (best) BASIC25.31■■□□□ 1.643e-6■■□□□ 11.5
SF3B1O75533 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC24.01■■□□□ 1.433e-6■■□□□ 11.5
SF3B1O75533 HNRNPD-201ENST00000313899 3033 ntAPPRIS P4 TSL 1 (best) BASIC18.45■□□□□ 0.543e-6■■□□□ 11.5
SF3B1O75533 NDUFV2-201ENST00000318388 930 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.425e-7■■□□□ 11.5
SF3B1O75533 RPL35-203ENST00000487431 785 ntTSL 1 (best)23.64■■□□□ 1.381e-7■■□□□ 11.5
SF3B1O75533 PCF11-206ENST00000533018 580 ntTSL 319.64■□□□□ 0.732e-6■■□□□ 11.5
SF3B1O75533 PCF11-207ENST00000624931 1720 nt18.02■□□□□ 0.482e-6■■□□□ 11.5
SF3B1O75533 RPL35-205ENST00000495728 649 ntTSL 217.57■□□□□ 0.41e-7■■□□□ 11.5
SF3B1O75533 RPL35-201ENST00000348462 455 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.131e-7■■□□□ 11.5
SF3B1O75533 RPL35-206ENST00000629845 340 ntTSL 5 BASIC15.85■□□□□ 0.131e-7■■□□□ 11.5
SF3B1O75533 RPL35-204ENST00000493018 692 ntTSL 314.39□□□□□ -0.111e-7■■□□□ 11.5
SF3B1O75533 CALCOCO2-202ENST00000372317 462 ntTSL 312.29□□□□□ -0.445e-7■■□□□ 11.5
SF3B1O75533 PRDX6-202ENST00000460950 809 ntTSL 211.01□□□□□ -0.655e-7■■□□□ 11.5
SF3B1O75533 CALCOCO2-219ENST00000511697 558 ntTSL 410.93□□□□□ -0.665e-7■■□□□ 11.5
SF3B1O75533 RPL35-202ENST00000373570 493 ntTSL 3 BASIC10.13□□□□□ -0.791e-7■■□□□ 11.5
SF3B1O75533 XRN2-201ENST00000377191 3437 ntAPPRIS P1 TSL 1 (best) BASIC9.6□□□□□ -0.871e-5■■□□□ 11.5
SF3B1O75533 CALCOCO2-217ENST00000510356 1009 ntTSL 1 (best)9.19□□□□□ -0.945e-7■■□□□ 11.5
SF3B1O75533 NDUFV2-202ENST00000400033 942 ntTSL 3 BASIC8.04□□□□□ -1.125e-7■■□□□ 11.5
SF3B1O75533 HMGB2-202ENST00000438704 1032 ntAPPRIS P1 TSL 1 (best) BASIC7.96□□□□□ -1.141e-5■■□□□ 11.5
SF3B1O75533 PRDX6-201ENST00000340385 1751 ntAPPRIS P1 TSL 1 (best) BASIC7.29□□□□□ -1.245e-7■■□□□ 11.5
SF3B1O75533 NDUFV2-203ENST00000465096 643 ntTSL 25.81□□□□□ -1.485e-7■■□□□ 11.5
SF3B1O75533 SNORD36C-201ENST00000516733 66 ntBASIC0.3□□□□□ -2.361e-7■■□□□ 11.5
SF3B1O75533 YARS-206ENST00000478828 1044 ntTSL 212.55□□□□□ -0.47e-7■■□□□ 11.5
SF3B1O75533 TRIM24-203ENST00000464210 545 ntTSL 45.85□□□□□ -1.477e-7■■□□□ 11.5
SF3B1O75533 HBE1-201ENST00000292896 827 ntAPPRIS P1 TSL 1 (best) BASIC10.51□□□□□ -0.732e-7■■□□□ 11.4
SF3B1O75533 TAF1D-206ENST00000527068 1023 ntTSL 54.07□□□□□ -1.761e-7■■□□□ 11.4
SF3B1O75533 MATR3-228ENST00000620916 3134 ntTSL 5 BASIC5.15□□□□□ -1.584e-6■■□□□ 11.4
SF3B1O75533 SRRM2-210ENST00000572721 841 ntTSL 215.43■□□□□ 0.061e-6■■□□□ 11.4
SF3B1O75533 SRRM2-211ENST00000572883 887 ntTSL 211.52□□□□□ -0.571e-6■■□□□ 11.4
SF3B1O75533 SLC6A8-208ENST00000467402 308 ntTSL 513.15□□□□□ -0.38e-7■□□□□ 11.3
SF3B1O75533 SFPQ-201ENST00000357214 3747 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.437e-6■□□□□ 11.3
SF3B1O75533 MIR3064-201ENST00000581130 66 ntBASIC-0.5□□□□□ -2.492e-9■□□□□ 11.3
SF3B1O75533 SFPQ-209ENST00000485454 339 ntTSL 21.54□□□□□ -2.162e-12■□□□□ 11.3
SF3B1O75533 SNORD3C-201ENST00000580533 581 ntBASIC12.64□□□□□ -0.392e-9■□□□□ 11.3
SF3B1O75533 SNORD3C-203ENST00000625845 217 nt12.01□□□□□ -0.492e-9■□□□□ 11.3
SF3B1O75533 SNORD3C-202ENST00000620446 218 nt11.83□□□□□ -0.522e-9■□□□□ 11.3
SF3B1O75533 DDX39B-206ENST00000419338 928 ntTSL 515.63■□□□□ 0.093e-6■□□□□ 11.3
SF3B1O75533 DDX39B-204ENST00000418897 583 ntTSL 313.31□□□□□ -0.283e-6■□□□□ 11.3
SF3B1O75533 DDX39B-213ENST00000456976 720 ntTSL 513.31□□□□□ -0.283e-6■□□□□ 11.3
SF3B1O75533 DDX39B-208ENST00000428098 817 ntTSL 313.29□□□□□ -0.283e-6■□□□□ 11.3
SF3B1O75533 DDX39B-212ENST00000456662 932 ntTSL 513.29□□□□□ -0.283e-6■□□□□ 11.3
SF3B1O75533 DDX39B-210ENST00000431908 914 ntTSL 513.13□□□□□ -0.313e-6■□□□□ 11.3
SF3B1O75533 DDX39B-205ENST00000419020 583 ntTSL 313□□□□□ -0.333e-6■□□□□ 11.3
SF3B1O75533 DDX39B-209ENST00000428450 633 ntTSL 412.85□□□□□ -0.353e-6■□□□□ 11.3
SF3B1O75533 DDX39B-219ENST00000481456 5158 ntTSL 211.68□□□□□ -0.543e-6■□□□□ 11.3
SF3B1O75533 DDX39B-211ENST00000449757 591 ntTSL 311.44□□□□□ -0.583e-6■□□□□ 11.3
SF3B1O75533 DDX39B-220ENST00000482195 1232 ntTSL 211.44□□□□□ -0.583e-6■□□□□ 11.3
SF3B1O75533 DDX39B-207ENST00000427214 1005 ntTSL 57.3□□□□□ -1.243e-6■□□□□ 11.3
SF3B1O75533 ATP5B-206ENST00000550162 863 ntTSL 214.28□□□□□ -0.125e-7■□□□□ 11.2
SF3B1O75533 SFPQ-205ENST00000468598 2835 ntTSL 1 (best)7.33□□□□□ -1.243e-7■□□□□ 11.2
SF3B1O75533 SFPQ-203ENST00000466213 1431 ntTSL 1 (best)6.34□□□□□ -1.43e-7■□□□□ 11.2
SF3B1O75533 SFPQ-204ENST00000466745 662 ntTSL 25.04□□□□□ -1.63e-7■□□□□ 11.2
SF3B1O75533 SFPQ-208ENST00000485365 693 ntTSL 25.04□□□□□ -1.63e-7■□□□□ 11.2
SF3B1O75533 SFPQ-210ENST00000490668 434 ntTSL 24.63□□□□□ -1.673e-7■□□□□ 11.2
SF3B1O75533 MCL1-202ENST00000369026 3932 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.029e-9■□□□□ 11.2
SF3B1O75533 MCL1-204ENST00000620947 3626 ntTSL 1 (best) BASIC13.18□□□□□ -0.39e-9■□□□□ 11.2
SF3B1O75533 ENOSF1-215ENST00000583771 436 ntTSL 525.26■■□□□ 1.632e-7■□□□□ 11.1
SF3B1O75533 ENOSF1-218ENST00000584453 1230 ntTSL 525.24■■□□□ 1.632e-7■□□□□ 11.1
SF3B1O75533 ENOSF1-201ENST00000251101 1867 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.022e-7■□□□□ 11.1
SF3B1O75533 ENOSF1-206ENST00000578651 1177 ntTSL 219.85■□□□□ 0.772e-7■□□□□ 11.1
SF3B1O75533 ENOSF1-211ENST00000581475 1745 ntTSL 1 (best)19.52■□□□□ 0.722e-7■□□□□ 11.1
SF3B1O75533 ENOSF1-202ENST00000340116 1658 ntTSL 5 BASIC18.08■□□□□ 0.482e-7■□□□□ 11.1
SF3B1O75533 ENOSF1-209ENST00000580982 1397 ntTSL 5 BASIC16.81■□□□□ 0.282e-7■□□□□ 11.1
SF3B1O75533 ENOSF1-222ENST00000585128 1296 ntTSL 514.53□□□□□ -0.082e-7■□□□□ 11.1
SF3B1O75533 ENOSF1-207ENST00000579053 1313 ntTSL 514.51□□□□□ -0.092e-7■□□□□ 11.1
SF3B1O75533 ENOSF1-208ENST00000580605 699 ntTSL 314.28□□□□□ -0.122e-7■□□□□ 11.1
SF3B1O75533 GLUL-205ENST00000461447 689 ntTSL 212.55□□□□□ -0.42e-7■□□□□ 11.1
SF3B1O75533 ENOSF1-203ENST00000383578 4188 ntTSL 1 (best) BASIC12.52□□□□□ -0.412e-7■□□□□ 11.1
SF3B1O75533 ENOSF1-221ENST00000585004 1501 ntTSL 211.04□□□□□ -0.642e-7■□□□□ 11.1
SF3B1O75533 TFRC-214ENST00000483983 757 ntTSL 24.98□□□□□ -1.611e-6■□□□□ 11.1
SF3B1O75533 TFRC-206ENST00000463047 549 ntTSL 24.76□□□□□ -1.651e-6■□□□□ 11.1
SF3B1O75533 ELP2-213ENST00000540730 578 ntTSL 49.97□□□□□ -0.812e-7■□□□□ 11.1
SF3B1O75533 ELP2-223ENST00000543439 551 ntTSL 49.05□□□□□ -0.962e-7■□□□□ 11.1
SF3B1O75533 ELP2-212ENST00000540323 577 ntTSL 25.03□□□□□ -1.62e-7■□□□□ 11.1
SF3B1O75533 SFPQ-207ENST00000471991 440 ntTSL 215.34■□□□□ 0.057e-7■□□□□ 11.1
SF3B1O75533 NUP214-226ENST00000531600 1775 ntTSL 212.26□□□□□ -0.457e-7■□□□□ 11.1
SF3B1O75533 NUP214-205ENST00000465486 1068 ntTSL 1 (best)9.47□□□□□ -0.897e-7■□□□□ 11.1
SF3B1O75533 NUP214-206ENST00000470765 620 ntTSL 59.47□□□□□ -0.897e-7■□□□□ 11.1
SF3B1O75533 NUP214-218ENST00000528114 575 ntTSL 48.44□□□□□ -1.067e-7■□□□□ 11.1
SF3B1O75533 NUP214-213ENST00000525384 840 ntTSL 1 (best)7.26□□□□□ -1.257e-7■□□□□ 11.1
SF3B1O75533 SRSF2-211ENST00000592676 559 ntTSL 35.99□□□□□ -1.457e-7■□□□□ 11.1
SF3B1O75533 KHSRP-202ENST00000594496 999 ntTSL 219.99■□□□□ 0.793e-6■□□□□ 11
SF3B1O75533 KHSRP-211ENST00000599642 428 ntTSL 219.92■□□□□ 0.783e-6■□□□□ 11
SF3B1O75533 HIST1H2BN-202ENST00000449538 715 ntTSL 1 (best)19.07■□□□□ 0.643e-6■□□□□ 11
SF3B1O75533 KHSRP-212ENST00000600480 851 ntTSL 217.32■□□□□ 0.363e-6■□□□□ 11
SF3B1O75533 KHSRP-203ENST00000594745 379 ntTSL 315.94■□□□□ 0.143e-6■□□□□ 11
SF3B1O75533 HIST1H2BN-201ENST00000396980 432 ntAPPRIS P1 TSL 5 BASIC13.55□□□□□ -0.243e-6■□□□□ 11
SF3B1O75533 KHSRP-208ENST00000597656 328 ntTSL 59.03□□□□□ -0.963e-6■□□□□ 11
SF3B1O75533 HIST1H2BN-203ENST00000606613 4137 ntTSL 1 (best) BASIC8.13□□□□□ -1.113e-6■□□□□ 11
SF3B1O75533 SREK1-213ENST00000523655 606 ntTSL 54.13□□□□□ -1.753e-6■□□□□ 11
SF3B1O75533 SREK1-208ENST00000520580 2369 ntTSL 23.32□□□□□ -1.883e-6■□□□□ 11
SF3B1O75533 PUM1-220ENST00000529846 683 ntTSL 35.74□□□□□ -1.492e-6■□□□□ 11
SF3B1O75533 PUM1-216ENST00000525997 650 ntTSL 35.65□□□□□ -1.512e-6■□□□□ 11
SF3B1O75533 RPL13-203ENST00000399461 879 ntTSL 224.35■■□□□ 1.494e-8■□□□□ 11
SF3B1O75533 HNRNPD-205ENST00000507010 748 ntTSL 327.38■■□□□ 1.974e-7■□□□□ 11
SF3B1O75533 HNRNPD-204ENST00000503822 607 ntTSL 524.9■■□□□ 1.584e-7■□□□□ 11
SF3B1O75533 HNRNPD-207ENST00000509107 583 ntTSL 522.86■■□□□ 1.254e-7■□□□□ 11
SF3B1O75533 HNRNPD-212ENST00000515432 545 ntTSL 58.1□□□□□ -1.114e-7■□□□□ 11
SF3B1O75533 SFPQ-202ENST00000460428 464 ntTSL 28.39□□□□□ -1.072e-6■□□□□ 10.9
SF3B1O75533 SFPQ-206ENST00000470472 874 ntTSL 54.23□□□□□ -1.732e-6■□□□□ 10.9
Retrieved 100 of 46,956 protein–RNA pairs in 1385.8 ms