Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 COMT-206ENST00000407537 1457 ntAPPRIS P3 TSL 5 BASIC21.32■■□□□ 1
SHOX2O60902 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC21.32■■□□□ 1
SHOX2O60902 SH3D19-211ENST00000604030 5228 ntTSL 5 BASIC21.32■■□□□ 1
SHOX2O60902 AC112907.3-201ENST00000577781 2400 ntBASIC21.31■■□□□ 1
SHOX2O60902 COL13A1-201ENST00000354547 3027 ntAPPRIS ALT2 TSL 5 BASIC21.31■■□□□ 1
SHOX2O60902 IKBKG-212ENST00000617207 1949 ntAPPRIS ALT1 TSL 3 BASIC21.31■■□□□ 1
SHOX2O60902 KCNT1-201ENST00000263604 5245 ntAPPRIS ALT2 TSL 5 BASIC21.31■■□□□ 1
SHOX2O60902 CFP-202ENST00000377005 1435 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
SHOX2O60902 AL162377.1-201ENST00000618844 1793 ntBASIC21.31■■□□□ 1
SHOX2O60902 KCNMB4-201ENST00000258111 4731 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
SHOX2O60902 HSF4-225ENST00000584272 1549 ntTSL 1 (best) BASIC21.31■■□□□ 1
SHOX2O60902 B3GNT2-201ENST00000301998 2763 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
SHOX2O60902 P3H4-201ENST00000355468 2791 ntAPPRIS P2 TSL 2 BASIC21.31■■□□□ 1
SHOX2O60902 SLC12A5-210ENST00000616202 2445 ntTSL 1 (best) BASIC21.31■■□□□ 1
SHOX2O60902 SMURF1-201ENST00000361125 5737 ntTSL 1 (best) BASIC21.31■■□□□ 1
SHOX2O60902 WASH6P-203ENST00000460206 1826 ntTSL 5 BASIC21.31■■□□□ 1
SHOX2O60902 CHP2-201ENST00000300113 2382 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
SHOX2O60902 HSD17B1-202ENST00000585807 4982 ntAPPRIS P3 TSL 1 (best) BASIC21.31■■□□□ 1
SHOX2O60902 POLD2-201ENST00000223361 1597 ntTSL 5 BASIC21.31■■□□□ 1
SHOX2O60902 ASGR1-208ENST00000574388 1552 ntTSL 1 (best) BASIC21.31■■□□□ 1
SHOX2O60902 RCN3-201ENST00000270645 1859 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
SHOX2O60902 EPCAM-202ENST00000405271 1530 ntTSL 5 BASIC21.3■■□□□ 1
SHOX2O60902 CBWD3-213ENST00000618217 1611 ntTSL 1 (best) BASIC21.3■■□□□ 1
SHOX2O60902 AC020907.5-201ENST00000624372 1936 ntBASIC21.3■■□□□ 1
SHOX2O60902 STRN4-202ENST00000391910 3628 ntAPPRIS ALT1 TSL 5 BASIC21.3■■□□□ 1
SHOX2O60902 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
SHOX2O60902 FAM162B-201ENST00000368557 1036 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
SHOX2O60902 KCNN1-204ENST00000615435 1691 ntAPPRIS ALT1 TSL 5 BASIC21.3■■□□□ 1
SHOX2O60902 PTPRJ-201ENST00000418331 5122 ntAPPRIS P2 TSL 1 (best) BASIC21.3■■□□□ 1
SHOX2O60902 RNF126P1-201ENST00000567452 1320 ntBASIC21.29■■□□□ 1
SHOX2O60902 MFSD3-201ENST00000301327 1548 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
SHOX2O60902 REPS1-203ENST00000409812 2511 ntTSL 1 (best) BASIC21.29■■□□□ 1
SHOX2O60902 TMEM259-209ENST00000592590 2509 ntTSL 5 BASIC21.29■■□□□ 1
SHOX2O60902 ZNF12-201ENST00000342651 2921 ntAPPRIS ALT2 TSL 2 BASIC21.29■■□□□ 1
SHOX2O60902 PCSK6-214ENST00000611716 4409 ntAPPRIS P4 TSL 1 (best) BASIC21.29■■□□□ 1
SHOX2O60902 ANKRD28-201ENST00000399451 6564 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
SHOX2O60902 UBTF-203ENST00000393606 2683 ntTSL 1 (best) BASIC21.29■■□□□ 1
SHOX2O60902 RNF146-213ENST00000610153 2070 ntAPPRIS ALT1 TSL 2 BASIC21.29■■□□□ 1
SHOX2O60902 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC21.29■■□□□ 1
SHOX2O60902 GMPPB-202ENST00000308388 1582 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
SHOX2O60902 MARCH2-201ENST00000215555 1376 ntAPPRIS P1 TSL 5 BASIC21.29■■□□□ 1
SHOX2O60902 NREP-216ENST00000508870 540 ntAPPRIS P1 TSL 4 BASIC21.29■■□□□ 1
SHOX2O60902 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
SHOX2O60902 AC007249.2-201ENST00000553181 1737 ntTSL 5 BASIC21.29■■□□□ 1
SHOX2O60902 PLK5-205ENST00000642079 1969 ntBASIC21.28■■□□□ 1
SHOX2O60902 LSM12-201ENST00000293406 2308 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
SHOX2O60902 SPNS1-201ENST00000311008 2208 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
SHOX2O60902 LINC00304-201ENST00000321214 2243 ntTSL 2 BASIC21.28■■□□□ 1
SHOX2O60902 MAP1LC3A-201ENST00000360668 1574 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
SHOX2O60902 AF131216.4-201ENST00000638924 1588 ntBASIC21.28■■□□□ 1
SHOX2O60902 SMIM19-203ENST00000417410 1466 ntAPPRIS P1 TSL 2 BASIC21.28■■□□□ 1
SHOX2O60902 SUSD1-204ENST00000374270 3124 ntAPPRIS P3 TSL 1 (best) BASIC21.28■■□□□ 1
SHOX2O60902 ZMYND19-201ENST00000298585 1375 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
SHOX2O60902 MT2A-201ENST00000245185 786 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
SHOX2O60902 LYPD6B-204ENST00000409876 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC21.28■■□□□ 1
SHOX2O60902 AC068134.2-201ENST00000437095 576 ntTSL 3 BASIC21.28■■□□□ 1
SHOX2O60902 LONRF2P2-201ENST00000439212 571 ntBASIC21.28■■□□□ 1
SHOX2O60902 AC092807.3-205ENST00000467666 531 ntTSL 3 BASIC21.28■■□□□ 1
SHOX2O60902 AC018755.3-202ENST00000596210 929 ntBASIC21.28■■□□□ 1
SHOX2O60902 STIM2-211ENST00000639195 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC21.28■■□□□ 1
SHOX2O60902 AC116562.4-201ENST00000641316 2276 ntBASIC21.28■■□□□ 1
SHOX2O60902 EGFL7-201ENST00000308874 1747 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
SHOX2O60902 FAM213A-202ENST00000372185 1723 ntTSL 2 BASIC21.28■■□□□ 1
SHOX2O60902 PPM1B-201ENST00000282412 2606 ntAPPRIS P4 TSL 1 (best) BASIC21.28■■□□□ 1
SHOX2O60902 P4HB-201ENST00000331483 2603 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
SHOX2O60902 ARHGAP11A-208ENST00000567348 2422 ntTSL 1 (best) BASIC21.28■■□□□ 1
SHOX2O60902 TATDN2-201ENST00000287652 5342 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
SHOX2O60902 HPCAL1-201ENST00000307845 1751 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
SHOX2O60902 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
SHOX2O60902 KLC1-219ENST00000555836 2467 ntTSL 5 BASIC21.28■■□□□ 1
SHOX2O60902 PLEKHJ1-206ENST00000587962 1311 ntTSL 2 BASIC21.28■■□□□ 1
SHOX2O60902 TLK2-202ENST00000343388 3227 ntAPPRIS ALT1 TSL 1 (best) BASIC21.27■■□□□ 1
SHOX2O60902 PHF11-202ENST00000378319 1359 ntAPPRIS P3 TSL 1 (best) BASIC21.27■■□□□ 1
SHOX2O60902 RAD51-210ENST00000557850 1397 ntTSL 2 BASIC21.27■■□□□ 1
SHOX2O60902 LARGE2-206ENST00000529052 2459 ntAPPRIS ALT2 TSL 2 BASIC21.27■■□□□ 1
SHOX2O60902 SERBP1-201ENST00000361219 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC21.27■■□□□ 1
SHOX2O60902 LMAN2-208ENST00000515209 1149 ntAPPRIS ALT2 TSL 3 BASIC21.27■■□□□ 1
SHOX2O60902 UBFD1-208ENST00000567264 642 ntAPPRIS ALT2 TSL 5 BASIC21.27■■□□□ 1
SHOX2O60902 UBE2E3-213ENST00000602959 909 ntAPPRIS P1 TSL 5 BASIC21.27■■□□□ 1
SHOX2O60902 GALNS-201ENST00000268695 2363 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
SHOX2O60902 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC21.27■■□□□ 1
SHOX2O60902 AL034417.2-201ENST00000445300 2044 ntTSL 2 BASIC21.27■■□□□ 1
SHOX2O60902 MXRA7-201ENST00000355797 5661 ntAPPRIS P4 TSL 2 BASIC21.27■■□□□ 1
SHOX2O60902 NFKBIE-204ENST00000619360 2327 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
SHOX2O60902 BACE2-202ENST00000330333 2993 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
SHOX2O60902 TFEB-211ENST00000420312 1996 ntTSL 5 BASIC21.27■□□□□ 0.99
SHOX2O60902 ABHD16B-201ENST00000369916 1491 ntAPPRIS P1 BASIC21.26■□□□□ 0.99
SHOX2O60902 AC004687.1-201ENST00000579003 1625 ntBASIC21.26■□□□□ 0.99
SHOX2O60902 RCCD1-201ENST00000394258 2689 ntAPPRIS P2 TSL 1 (best) BASIC21.26■□□□□ 0.99
SHOX2O60902 TNXA-203ENST00000507684 2038 ntBASIC21.26■□□□□ 0.99
SHOX2O60902 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC21.26■□□□□ 0.99
SHOX2O60902 CRLF1-201ENST00000392386 1792 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
SHOX2O60902 SLC35C1-202ENST00000442528 1756 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
SHOX2O60902 RPH3A-203ENST00000543106 2581 ntAPPRIS ALT2 TSL 2 BASIC21.26■□□□□ 0.99
SHOX2O60902 TMEM155-201ENST00000337677 2313 ntAPPRIS P2 TSL 1 (best) BASIC21.26■□□□□ 0.99
SHOX2O60902 NUTM2D-201ENST00000381697 3290 ntAPPRIS P5 TSL 1 (best) BASIC21.26■□□□□ 0.99
SHOX2O60902 TMEM11-201ENST00000317635 2095 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
SHOX2O60902 GPAA1-201ENST00000355091 2078 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
SHOX2O60902 DUX4L4-201ENST00000566884 1269 ntBASIC21.26■□□□□ 0.99
SHOX2O60902 UBALD1-203ENST00000587649 707 ntTSL 3 BASIC21.26■□□□□ 0.99
Retrieved 100 of 98,524 protein–RNA pairs in 38.2 ms