Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 HLA-C-203ENST00000383329 1554 ntAPPRIS ALT2 BASIC21.08■□□□□ 0.97
TRIM39Q9HCM9 KRTAP5-2-201ENST00000412090 1118 ntAPPRIS P1 BASIC21.08■□□□□ 0.97
TRIM39Q9HCM9 CAMKK2-208ENST00000412367 2006 ntAPPRIS ALT2 TSL 1 (best) BASIC21.08■□□□□ 0.97
TRIM39Q9HCM9 PGAP3-204ENST00000429199 970 ntTSL 2 BASIC21.08■□□□□ 0.97
TRIM39Q9HCM9 AC012313.1-204ENST00000444227 462 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
TRIM39Q9HCM9 UCHL1-210ENST00000512788 785 ntTSL 3 BASIC21.08■□□□□ 0.97
TRIM39Q9HCM9 TESC-206ENST00000541210 936 ntTSL 3 BASIC21.08■□□□□ 0.97
TRIM39Q9HCM9 ENTPD5-206ENST00000556242 1437 ntTSL 5 BASIC21.08■□□□□ 0.97
TRIM39Q9HCM9 AC004854.2-201ENST00000608450 1441 ntBASIC21.08■□□□□ 0.97
TRIM39Q9HCM9 TPRN-202ENST00000409012 2718 ntAPPRIS P2 TSL 1 (best) BASIC21.08■□□□□ 0.96
TRIM39Q9HCM9 PLEKHA8-208ENST00000622102 2140 ntTSL 5 BASIC21.08■□□□□ 0.96
TRIM39Q9HCM9 GATA1-202ENST00000376670 1497 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
TRIM39Q9HCM9 SPI1-202ENST00000378538 1403 ntAPPRIS P3 TSL 1 (best) BASIC21.07■□□□□ 0.96
TRIM39Q9HCM9 ECHDC2-221ENST00000536120 1446 ntTSL 3 BASIC21.07■□□□□ 0.96
TRIM39Q9HCM9 HIST2H2AC-201ENST00000331380 390 ntAPPRIS P1 BASIC21.07■□□□□ 0.96
TRIM39Q9HCM9 C5orf38-201ENST00000334000 890 ntAPPRIS P3 TSL 1 (best) BASIC21.07■□□□□ 0.96
TRIM39Q9HCM9 C19orf12-205ENST00000392278 895 ntTSL 2 BASIC21.07■□□□□ 0.96
TRIM39Q9HCM9 GXYLT1P2-201ENST00000433312 1230 ntBASIC21.07■□□□□ 0.96
TRIM39Q9HCM9 TRAPPC2L-213ENST00000567895 854 ntTSL 3 BASIC21.07■□□□□ 0.96
TRIM39Q9HCM9 AC140479.5-201ENST00000568189 735 ntTSL 3 BASIC21.07■□□□□ 0.96
TRIM39Q9HCM9 CIRBP-222ENST00000589235 1073 ntAPPRIS ALT1 TSL 2 BASIC21.07■□□□□ 0.96
TRIM39Q9HCM9 KAT2B-201ENST00000263754 4833 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
TRIM39Q9HCM9 NBL1-202ENST00000375136 2172 ntAPPRIS P3 TSL 1 (best) BASIC21.07■□□□□ 0.96
TRIM39Q9HCM9 NABP2-203ENST00000380198 1775 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
TRIM39Q9HCM9 PACRGL-227ENST00000513459 1773 ntTSL 5 BASIC21.07■□□□□ 0.96
TRIM39Q9HCM9 SMPD5-201ENST00000528912 1390 ntTSL 5 BASIC21.07■□□□□ 0.96
TRIM39Q9HCM9 GGA2-211ENST00000567468 1713 ntTSL 2 BASIC21.07■□□□□ 0.96
TRIM39Q9HCM9 NFIX-203ENST00000397661 3143 ntTSL 5 BASIC21.07■□□□□ 0.96
TRIM39Q9HCM9 SYNGR2-203ENST00000588282 1553 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
TRIM39Q9HCM9 AC079328.2-202ENST00000560903 1410 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
TRIM39Q9HCM9 EGR4-202ENST00000545030 2372 ntAPPRIS P2 TSL 1 (best) BASIC21.06■□□□□ 0.96
TRIM39Q9HCM9 ANKHD1-205ENST00000394723 2135 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
TRIM39Q9HCM9 KRT18P61-201ENST00000585825 1298 ntBASIC21.06■□□□□ 0.96
TRIM39Q9HCM9 NEDD4L-225ENST00000589054 1033 ntTSL 3 BASIC21.06■□□□□ 0.96
TRIM39Q9HCM9 HNF4A-205ENST00000443598 1603 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
TRIM39Q9HCM9 PROSER2-205ENST00000622831 1646 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
TRIM39Q9HCM9 OSBPL5-208ENST00000478260 2653 ntTSL 2 BASIC21.06■□□□□ 0.96
TRIM39Q9HCM9 BICDL2-201ENST00000389347 1811 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
TRIM39Q9HCM9 TGFBR1-202ENST00000374994 6516 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
TRIM39Q9HCM9 PDIA6-207ENST00000540494 2509 ntAPPRIS ALT1 TSL 2 BASIC21.06■□□□□ 0.96
TRIM39Q9HCM9 SLC2A11-202ENST00000316185 1555 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
TRIM39Q9HCM9 ZNF568-208ENST00000586353 1902 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
TRIM39Q9HCM9 AL117328.2-201ENST00000624617 1940 ntBASIC21.06■□□□□ 0.96
TRIM39Q9HCM9 GPR137B-202ENST00000366592 2042 ntAPPRIS P2 TSL 1 (best) BASIC21.05■□□□□ 0.96
TRIM39Q9HCM9 EPO-201ENST00000252723 1330 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
TRIM39Q9HCM9 SPHK1-201ENST00000323374 2138 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
TRIM39Q9HCM9 CITED2-202ENST00000536159 1797 ntAPPRIS P1 TSL 3 BASIC21.05■□□□□ 0.96
TRIM39Q9HCM9 CITED2-203ENST00000537332 1780 ntTSL 3 BASIC21.05■□□□□ 0.96
TRIM39Q9HCM9 ARL13B-205ENST00000471138 2206 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
TRIM39Q9HCM9 CPE-201ENST00000402744 2421 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
TRIM39Q9HCM9 RAP1B-202ENST00000341355 714 ntAPPRIS P1 TSL 3 BASIC21.05■□□□□ 0.96
TRIM39Q9HCM9 GLI3-203ENST00000437480 451 ntTSL 2 BASIC21.05■□□□□ 0.96
TRIM39Q9HCM9 AC011825.4-201ENST00000582233 473 ntTSL 2 BASIC21.05■□□□□ 0.96
TRIM39Q9HCM9 DISC1-224ENST00000639374 1071 ntAPPRIS ALT2 TSL 1 (best) BASIC21.05■□□□□ 0.96
TRIM39Q9HCM9 COL15A1-205ENST00000610452 5422 ntAPPRIS ALT2 TSL 5 BASIC21.05■□□□□ 0.96
TRIM39Q9HCM9 MXRA8-203ENST00000445648 2001 ntTSL 2 BASIC21.05■□□□□ 0.96
TRIM39Q9HCM9 RNF40-201ENST00000324685 5634 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
TRIM39Q9HCM9 HLA-DPB1-211ENST00000418931 1560 ntAPPRIS P2 BASIC21.05■□□□□ 0.96
TRIM39Q9HCM9 CBWD3-202ENST00000377342 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC21.05■□□□□ 0.96
TRIM39Q9HCM9 CHRAC1-203ENST00000519533 1678 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
TRIM39Q9HCM9 ANKRD19P-205ENST00000473204 2370 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
TRIM39Q9HCM9 TSSK1B-201ENST00000390666 2478 ntAPPRIS P1 BASIC21.04■□□□□ 0.96
TRIM39Q9HCM9 TUBG1-201ENST00000251413 1611 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
TRIM39Q9HCM9 B3GALT6-201ENST00000379198 2777 ntAPPRIS P1 BASIC21.04■□□□□ 0.96
TRIM39Q9HCM9 AC092384.1-201ENST00000378347 1812 ntTSL 2 BASIC21.04■□□□□ 0.96
TRIM39Q9HCM9 ST3GAL4-215ENST00000532243 1825 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
TRIM39Q9HCM9 NEU4-204ENST00000405370 1907 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
TRIM39Q9HCM9 ITPKC-201ENST00000263370 3385 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
TRIM39Q9HCM9 KIF2A-202ENST00000401507 2539 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
TRIM39Q9HCM9 KRT19P1-201ENST00000405746 1186 ntBASIC21.04■□□□□ 0.96
TRIM39Q9HCM9 AC093627.4-202ENST00000479592 591 ntTSL 4 BASIC21.04■□□□□ 0.96
TRIM39Q9HCM9 ATPIF1-204ENST00000497986 599 ntTSL 2 BASIC21.04■□□□□ 0.96
TRIM39Q9HCM9 AC068385.1-201ENST00000533218 409 ntTSL 3 BASIC21.04■□□□□ 0.96
TRIM39Q9HCM9 IGFALS-203ENST00000568221 730 ntTSL 4 BASIC21.04■□□□□ 0.96
TRIM39Q9HCM9 AC022517.1-201ENST00000592429 346 ntBASIC21.04■□□□□ 0.96
TRIM39Q9HCM9 NFKBIL1-203ENST00000376148 1478 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
TRIM39Q9HCM9 GMDS-202ENST00000380815 1752 ntAPPRIS P3 TSL 1 (best) BASIC21.04■□□□□ 0.96
TRIM39Q9HCM9 PHLDB2-210ENST00000478922 1861 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
TRIM39Q9HCM9 FAM99A-202ENST00000538190 1989 ntBASIC21.04■□□□□ 0.96
TRIM39Q9HCM9 ITM2C-202ENST00000326427 2078 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
TRIM39Q9HCM9 OLIG2-202ENST00000382357 2578 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
TRIM39Q9HCM9 ODC1-201ENST00000234111 2653 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
TRIM39Q9HCM9 SPAST-204ENST00000621856 1715 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
TRIM39Q9HCM9 ADRM1-204ENST00000491935 1530 ntAPPRIS P1 TSL 5 BASIC21.04■□□□□ 0.96
TRIM39Q9HCM9 ANTXR2-202ENST00000346652 1343 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
TRIM39Q9HCM9 PITX1-205ENST00000506438 1305 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
TRIM39Q9HCM9 GRM6-201ENST00000231188 6143 ntAPPRIS P1 TSL 2 BASIC21.03■□□□□ 0.96
TRIM39Q9HCM9 NARF-202ENST00000345415 1487 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
TRIM39Q9HCM9 SELENOO-201ENST00000380903 2315 ntAPPRIS P2 TSL 1 (best) BASIC21.03■□□□□ 0.96
TRIM39Q9HCM9 SELENOO-203ENST00000611222 2311 ntAPPRIS ALT2 TSL 5 BASIC21.03■□□□□ 0.96
TRIM39Q9HCM9 DMRT1-201ENST00000382276 2222 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
TRIM39Q9HCM9 TMEM54-202ENST00000373463 999 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
TRIM39Q9HCM9 IL15RA-201ENST00000379971 588 ntTSL 3 BASIC21.03■□□□□ 0.96
TRIM39Q9HCM9 RAMP1-203ENST00000404910 857 ntTSL 2 BASIC21.03■□□□□ 0.96
TRIM39Q9HCM9 PYCR3-203ENST00000433751 1000 ntAPPRIS ALT2 TSL 2 BASIC21.03■□□□□ 0.96
TRIM39Q9HCM9 RPS15-210ENST00000592623 873 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
TRIM39Q9HCM9 AC007773.1-201ENST00000592680 972 ntTSL 2 BASIC21.03■□□□□ 0.96
TRIM39Q9HCM9 AC092666.2-201ENST00000613287 246 ntBASIC21.03■□□□□ 0.96
TRIM39Q9HCM9 RUSC1-AS1-203ENST00000450199 1636 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
TRIM39Q9HCM9 LSR-203ENST00000360798 1963 ntTSL 2 BASIC21.03■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 20 ms