Protein–RNA interactions for Protein: Q96S90

LYSMD1, LysM and putative peptidoglycan-binding domain-containing protein 1, humanhuman

Predictions only

Length 227 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LYSMD1Q96S90 MSRB1-201ENST00000361871 1423 ntAPPRIS P2 TSL 1 (best) BASIC21.23■□□□□ 0.99
LYSMD1Q96S90 CEBPB-AS1-201ENST00000613921 2648 ntTSL 3 BASIC21.23■□□□□ 0.99
LYSMD1Q96S90 SPI1-201ENST00000227163 1168 ntAPPRIS ALT1 TSL 2 BASIC21.23■□□□□ 0.99
LYSMD1Q96S90 CPED1-202ENST00000340646 1056 ntTSL 5 BASIC21.23■□□□□ 0.99
LYSMD1Q96S90 LARP6-202ENST00000344870 527 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
LYSMD1Q96S90 PCMT1-201ENST00000367378 1293 ntAPPRIS P3 TSL 1 (best) BASIC21.23■□□□□ 0.99
LYSMD1Q96S90 ZPBP-201ENST00000046087 1213 ntAPPRIS P3 TSL 1 (best) BASIC21.23■□□□□ 0.99
LYSMD1Q96S90 TESC-206ENST00000541210 936 ntTSL 3 BASIC21.23■□□□□ 0.99
LYSMD1Q96S90 AC138907.5-202ENST00000569484 235 ntBASIC21.23■□□□□ 0.99
LYSMD1Q96S90 AC110285.4-201ENST00000572590 424 ntTSL 3 BASIC21.23■□□□□ 0.99
LYSMD1Q96S90 AC011825.4-201ENST00000582233 473 ntTSL 2 BASIC21.23■□□□□ 0.99
LYSMD1Q96S90 ACVRL1-201ENST00000388922 1971 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
LYSMD1Q96S90 DYRK1B-204ENST00000593685 2724 ntAPPRIS P3 TSL 5 BASIC21.22■□□□□ 0.99
LYSMD1Q96S90 PML-217ENST00000567543 1404 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
LYSMD1Q96S90 ASCL2-201ENST00000331289 1852 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
LYSMD1Q96S90 EMC7-201ENST00000256545 1155 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
LYSMD1Q96S90 KRT19P1-201ENST00000405746 1186 ntBASIC21.22■□□□□ 0.99
LYSMD1Q96S90 KRTAP5-2-201ENST00000412090 1118 ntAPPRIS P1 BASIC21.22■□□□□ 0.99
LYSMD1Q96S90 RPLP2-207ENST00000530797 637 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
LYSMD1Q96S90 AC093762.3-201ENST00000641918 318 ntAPPRIS P1 BASIC21.22■□□□□ 0.99
LYSMD1Q96S90 YBX1-201ENST00000321358 1514 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
LYSMD1Q96S90 TDRKH-206ENST00000440583 2296 ntTSL 5 BASIC21.22■□□□□ 0.99
LYSMD1Q96S90 DAZAP1-211ENST00000592522 2157 ntAPPRIS ALT1 TSL 5 BASIC21.21■□□□□ 0.99
LYSMD1Q96S90 PTGER3-204ENST00000356595 1943 ntAPPRIS P4 TSL 1 (best) BASIC21.21■□□□□ 0.99
LYSMD1Q96S90 PTGER3-207ENST00000370931 1914 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
LYSMD1Q96S90 LRRC3B-201ENST00000396641 1696 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
LYSMD1Q96S90 TSPAN4-206ENST00000397408 1430 ntAPPRIS P1 TSL 2 BASIC21.21■□□□□ 0.99
LYSMD1Q96S90 HERC2P8-204ENST00000567073 1988 ntTSL 5 BASIC21.21■□□□□ 0.99
LYSMD1Q96S90 ST3GAL4-201ENST00000227495 1790 ntAPPRIS P3 TSL 5 BASIC21.21■□□□□ 0.99
LYSMD1Q96S90 FOXJ1-201ENST00000322957 2641 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
LYSMD1Q96S90 HRASLS5-201ENST00000301790 1166 ntAPPRIS P3 TSL 1 (best) BASIC21.21■□□□□ 0.99
LYSMD1Q96S90 HIST2H2AC-201ENST00000331380 390 ntAPPRIS P1 BASIC21.21■□□□□ 0.99
LYSMD1Q96S90 C5orf38-201ENST00000334000 890 ntAPPRIS P3 TSL 1 (best) BASIC21.21■□□□□ 0.99
LYSMD1Q96S90 AC093627.4-202ENST00000479592 591 ntTSL 4 BASIC21.21■□□□□ 0.99
LYSMD1Q96S90 SERP1-208ENST00000491660 830 ntTSL 2 BASIC21.21■□□□□ 0.99
LYSMD1Q96S90 TSPAN11-202ENST00000535215 988 ntTSL 2 BASIC21.21■□□□□ 0.99
LYSMD1Q96S90 AC104187.1-201ENST00000607510 612 ntBASIC21.21■□□□□ 0.99
LYSMD1Q96S90 KCNMA1-224ENST00000618048 1269 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
LYSMD1Q96S90 BRWD1-202ENST00000341322 2495 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
LYSMD1Q96S90 STK25-234ENST00000535007 2459 ntTSL 2 BASIC21.21■□□□□ 0.99
LYSMD1Q96S90 SMPD2-201ENST00000258052 1645 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
LYSMD1Q96S90 DACT1-201ENST00000335867 2571 ntAPPRIS P3 TSL 1 (best) BASIC21.21■□□□□ 0.99
LYSMD1Q96S90 COCH-205ENST00000475087 1997 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
LYSMD1Q96S90 TMEM9B-201ENST00000309134 1659 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
LYSMD1Q96S90 AC093323.1-201ENST00000307533 2311 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
LYSMD1Q96S90 RFLNA-201ENST00000324038 2148 ntAPPRIS P2 TSL 2 BASIC21.2■□□□□ 0.98
LYSMD1Q96S90 MCMBP-202ENST00000369077 2465 ntAPPRIS ALT1 TSL 1 (best) BASIC21.2■□□□□ 0.98
LYSMD1Q96S90 DPF1-206ENST00000420980 2227 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
LYSMD1Q96S90 FAM19A5-202ENST00000358295 2638 ntAPPRIS P1 TSL 2 BASIC21.2■□□□□ 0.98
LYSMD1Q96S90 NIPA2-203ENST00000398013 2280 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
LYSMD1Q96S90 MANEAL-203ENST00000397631 2327 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
LYSMD1Q96S90 LY6E-201ENST00000292494 1181 ntAPPRIS P2 TSL 1 (best) BASIC21.2■□□□□ 0.98
LYSMD1Q96S90 PTRH1-201ENST00000335223 759 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
LYSMD1Q96S90 ATE1-AS1-201ENST00000437593 951 ntTSL 2 BASIC21.2■□□□□ 0.98
LYSMD1Q96S90 AC068385.1-201ENST00000533218 409 ntTSL 3 BASIC21.2■□□□□ 0.98
LYSMD1Q96S90 AC140479.5-201ENST00000568189 735 ntTSL 3 BASIC21.2■□□□□ 0.98
LYSMD1Q96S90 DISC1-224ENST00000639374 1071 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
LYSMD1Q96S90 TERF1-202ENST00000276603 1677 ntAPPRIS P4 TSL 1 (best) BASIC21.2■□□□□ 0.98
LYSMD1Q96S90 PITX1-205ENST00000506438 1305 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
LYSMD1Q96S90 PPP3CC-202ENST00000289963 2135 ntAPPRIS ALT1 TSL 1 (best) BASIC21.2■□□□□ 0.98
LYSMD1Q96S90 HSF2BP-201ENST00000291560 1899 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
LYSMD1Q96S90 KHDRBS2-201ENST00000281156 2332 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
LYSMD1Q96S90 TMEM121-201ENST00000392519 1532 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
LYSMD1Q96S90 DTNB-201ENST00000288642 2464 ntAPPRIS ALT2 TSL 2 BASIC21.19■□□□□ 0.98
LYSMD1Q96S90 DTNB-208ENST00000406818 2474 ntAPPRIS P4 TSL 1 (best) BASIC21.19■□□□□ 0.98
LYSMD1Q96S90 SEPT5-210ENST00000455784 2070 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
LYSMD1Q96S90 LINC00682-201ENST00000498940 1625 ntTSL 3 BASIC21.19■□□□□ 0.98
LYSMD1Q96S90 TPST1-201ENST00000304842 2116 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
LYSMD1Q96S90 SLC41A3-201ENST00000315891 1797 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
LYSMD1Q96S90 POU2F2-215ENST00000560398 1788 ntTSL 5 BASIC21.19■□□□□ 0.98
LYSMD1Q96S90 UCHL1-201ENST00000284440 1172 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
LYSMD1Q96S90 AC010141.2-201ENST00000452426 721 ntBASIC21.19■□□□□ 0.98
LYSMD1Q96S90 UCHL1-210ENST00000512788 785 ntTSL 3 BASIC21.19■□□□□ 0.98
LYSMD1Q96S90 SCN1B-203ENST00000595652 814 ntTSL 2 BASIC21.19■□□□□ 0.98
LYSMD1Q96S90 POTEC-204ENST00000620346 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
LYSMD1Q96S90 LINC01089-202ENST00000429892 1521 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
LYSMD1Q96S90 TUBG1-201ENST00000251413 1611 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
LYSMD1Q96S90 IFFO2-203ENST00000455833 6188 ntAPPRIS P1 TSL 5 BASIC21.18■□□□□ 0.98
LYSMD1Q96S90 ME2-206ENST00000638410 2289 ntTSL 5 BASIC21.18■□□□□ 0.98
LYSMD1Q96S90 ME2-210ENST00000639255 2262 ntTSL 5 BASIC21.18■□□□□ 0.98
LYSMD1Q96S90 CXCL16-203ENST00000574412 1668 ntAPPRIS P2 TSL 1 (best) BASIC21.18■□□□□ 0.98
LYSMD1Q96S90 HAUS3-202ENST00000443786 2430 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
LYSMD1Q96S90 VRK2-201ENST00000340157 1888 ntAPPRIS P3 TSL 1 (best) BASIC21.18■□□□□ 0.98
LYSMD1Q96S90 GRAMD1A-201ENST00000317991 2695 ntAPPRIS P3 TSL 1 (best) BASIC21.18■□□□□ 0.98
LYSMD1Q96S90 NKX6-2-201ENST00000368592 2673 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
LYSMD1Q96S90 BCS1L-210ENST00000431802 2015 ntAPPRIS P1 TSL 2 BASIC21.18■□□□□ 0.98
LYSMD1Q96S90 NEDD4L-225ENST00000589054 1033 ntTSL 3 BASIC21.18■□□□□ 0.98
LYSMD1Q96S90 CIRBP-222ENST00000589235 1073 ntAPPRIS ALT1 TSL 2 BASIC21.18■□□□□ 0.98
LYSMD1Q96S90 RPS15-210ENST00000592623 873 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
LYSMD1Q96S90 BIN1-203ENST00000346226 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
LYSMD1Q96S90 RHOT1-205ENST00000545287 2516 ntAPPRIS P4 TSL 5 BASIC21.18■□□□□ 0.98
LYSMD1Q96S90 MRPL37-206ENST00000605337 1582 ntTSL 5 BASIC21.18■□□□□ 0.98
LYSMD1Q96S90 VPS13B-204ENST00000441350 1626 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
LYSMD1Q96S90 GNB1L-202ENST00000403325 1699 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
LYSMD1Q96S90 RARG-204ENST00000543726 1779 ntTSL 2 BASIC21.18■□□□□ 0.98
LYSMD1Q96S90 PGAM5-204ENST00000543955 1773 ntTSL 2 BASIC21.18■□□□□ 0.98
LYSMD1Q96S90 MEIS3-212ENST00000561293 1918 ntAPPRIS P3 TSL 1 (best) BASIC21.17■□□□□ 0.98
LYSMD1Q96S90 CCNE1-201ENST00000262643 2043 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
LYSMD1Q96S90 MAGI2-208ENST00000522391 4878 ntAPPRIS ALT2 TSL 5 BASIC21.17■□□□□ 0.98
LYSMD1Q96S90 ZNF843-201ENST00000315678 2137 ntAPPRIS P2 TSL 2 BASIC21.17■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 14.5 ms