Protein–RNA interactions for Protein: Q8TBC3

SHKBP1, SH3KBP1-binding protein 1, humanhuman

Predictions only

Length 707 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1Q8TBC3 LINC00565-201ENST00000562710 2331 ntBASIC22.39■■□□□ 1.17
SHKBP1Q8TBC3 ODC1-201ENST00000234111 2653 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
SHKBP1Q8TBC3 NKX2-1-201ENST00000354822 2191 ntTSL 1 (best) BASIC22.38■■□□□ 1.17
SHKBP1Q8TBC3 SLC26A5-209ENST00000393735 1947 ntTSL 1 (best) BASIC22.38■■□□□ 1.17
SHKBP1Q8TBC3 AL117328.2-201ENST00000624617 1940 ntBASIC22.38■■□□□ 1.17
SHKBP1Q8TBC3 AC007322.1-201ENST00000426983 750 ntBASIC22.38■■□□□ 1.17
SHKBP1Q8TBC3 ABCC6P2-202ENST00000542005 706 ntTSL 1 (best) BASIC22.38■■□□□ 1.17
SHKBP1Q8TBC3 AC138907.5-202ENST00000569484 235 ntBASIC22.38■■□□□ 1.17
SHKBP1Q8TBC3 ABCC6-204ENST00000575728 714 ntTSL 1 (best) BASIC22.38■■□□□ 1.17
SHKBP1Q8TBC3 ASPSCR1-211ENST00000581647 720 ntTSL 2 BASIC22.38■■□□□ 1.17
SHKBP1Q8TBC3 AC005789.1-201ENST00000585411 297 ntTSL 3 BASIC22.38■■□□□ 1.17
SHKBP1Q8TBC3 MMP25-204ENST00000612971 1017 ntTSL 5 BASIC22.38■■□□□ 1.17
SHKBP1Q8TBC3 GAMT-205ENST00000640762 751 ntTSL 5 BASIC22.38■■□□□ 1.17
SHKBP1Q8TBC3 B3GNT6-202ENST00000622824 2503 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
SHKBP1Q8TBC3 SGMS1-210ENST00000619438 1680 ntTSL 5 BASIC22.38■■□□□ 1.17
SHKBP1Q8TBC3 GNB2-201ENST00000303210 1878 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
SHKBP1Q8TBC3 MSRB1-201ENST00000361871 1423 ntAPPRIS P2 TSL 1 (best) BASIC22.38■■□□□ 1.17
SHKBP1Q8TBC3 TPRN-202ENST00000409012 2718 ntAPPRIS P2 TSL 1 (best) BASIC22.37■■□□□ 1.17
SHKBP1Q8TBC3 SLC22A31-201ENST00000562855 1909 ntAPPRIS P1 TSL 5 BASIC22.37■■□□□ 1.17
SHKBP1Q8TBC3 TGIF1-206ENST00000405385 1689 ntTSL 2 BASIC22.37■■□□□ 1.17
SHKBP1Q8TBC3 CPED1-202ENST00000340646 1056 ntTSL 5 BASIC22.37■■□□□ 1.17
SHKBP1Q8TBC3 FXN-202ENST00000396364 980 ntTSL 5 BASIC22.37■■□□□ 1.17
SHKBP1Q8TBC3 HERC2P5-204ENST00000569697 1214 ntTSL 2 BASIC22.37■■□□□ 1.17
SHKBP1Q8TBC3 AC005697.1-201ENST00000582441 582 ntAPPRIS P1 TSL 4 BASIC22.37■■□□□ 1.17
SHKBP1Q8TBC3 AC005181.1-201ENST00000604782 1256 ntBASIC22.37■■□□□ 1.17
SHKBP1Q8TBC3 ECHDC2-221ENST00000536120 1446 ntTSL 3 BASIC22.37■■□□□ 1.17
SHKBP1Q8TBC3 PRR16-202ENST00000407149 1747 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
SHKBP1Q8TBC3 UCHL5-204ENST00000367451 1346 ntTSL 5 BASIC22.36■■□□□ 1.17
SHKBP1Q8TBC3 ZNF668-205ENST00000426488 2282 ntTSL 5 BASIC22.36■■□□□ 1.17
SHKBP1Q8TBC3 MDK-204ENST00000395569 686 ntTSL 1 (best) BASIC22.36■■□□□ 1.17
SHKBP1Q8TBC3 MAGI2-AS3-209ENST00000448195 774 ntTSL 3 BASIC22.36■■□□□ 1.17
SHKBP1Q8TBC3 NDUFS3-207ENST00000529276 558 ntTSL 2 BASIC22.36■■□□□ 1.17
SHKBP1Q8TBC3 AL034346.1-201ENST00000568244 1277 ntBASIC22.36■■□□□ 1.17
SHKBP1Q8TBC3 LITAF-205ENST00000570904 1118 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
SHKBP1Q8TBC3 AC110285.4-201ENST00000572590 424 ntTSL 3 BASIC22.36■■□□□ 1.17
SHKBP1Q8TBC3 AC027307.1-201ENST00000590252 457 ntTSL 5 BASIC22.36■■□□□ 1.17
SHKBP1Q8TBC3 AL121832.2-201ENST00000610979 668 ntBASIC22.36■■□□□ 1.17
SHKBP1Q8TBC3 LRRC34-201ENST00000446859 1718 ntAPPRIS ALT2 TSL 2 BASIC22.36■■□□□ 1.17
SHKBP1Q8TBC3 AL359710.1-201ENST00000427039 1544 ntTSL 2 BASIC22.36■■□□□ 1.17
SHKBP1Q8TBC3 TANGO2-201ENST00000327374 2273 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
SHKBP1Q8TBC3 DUSP9-202ENST00000370167 2289 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
SHKBP1Q8TBC3 MEIS3-212ENST00000561293 1918 ntAPPRIS P3 TSL 1 (best) BASIC22.35■■□□□ 1.17
SHKBP1Q8TBC3 NELFCD-213ENST00000602795 2305 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
SHKBP1Q8TBC3 CCDC7-201ENST00000277657 1899 ntAPPRIS P2 TSL 1 (best) BASIC22.35■■□□□ 1.17
SHKBP1Q8TBC3 COX5B-201ENST00000258424 712 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
SHKBP1Q8TBC3 EFCAB6-202ENST00000356087 1129 ntTSL 5 BASIC22.35■■□□□ 1.17
SHKBP1Q8TBC3 AC083906.2-201ENST00000511578 360 ntBASIC22.35■■□□□ 1.17
SHKBP1Q8TBC3 PDXDC2P-202ENST00000527016 543 ntTSL 3 BASIC22.35■■□□□ 1.17
SHKBP1Q8TBC3 TRH-201ENST00000302649 1978 ntAPPRIS P2 TSL 1 (best) BASIC22.35■■□□□ 1.17
SHKBP1Q8TBC3 NKX6-2-201ENST00000368592 2673 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
SHKBP1Q8TBC3 NDUFB2-212ENST00000476279 1666 ntAPPRIS P1 TSL 5 BASIC22.35■■□□□ 1.17
SHKBP1Q8TBC3 RNF166-202ENST00000537718 1525 ntTSL 2 BASIC22.35■■□□□ 1.17
SHKBP1Q8TBC3 AKR7A2-201ENST00000235835 1362 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
SHKBP1Q8TBC3 ITPKC-201ENST00000263370 3385 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
SHKBP1Q8TBC3 BX322557.1-202ENST00000400362 1460 ntTSL 1 (best) BASIC22.34■■□□□ 1.17
SHKBP1Q8TBC3 CREB3L3-202ENST00000595923 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC22.34■■□□□ 1.17
SHKBP1Q8TBC3 RASSF10-201ENST00000529419 2530 ntAPPRIS P1 BASIC22.34■■□□□ 1.17
SHKBP1Q8TBC3 ARL2BP-201ENST00000219204 2130 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
SHKBP1Q8TBC3 SRPK3-202ENST00000370101 1958 ntAPPRIS P3 TSL 1 (best) BASIC22.34■■□□□ 1.17
SHKBP1Q8TBC3 HMGA2-203ENST00000393578 1993 ntAPPRIS ALT1 TSL 1 (best) BASIC22.34■■□□□ 1.17
SHKBP1Q8TBC3 CPE-201ENST00000402744 2421 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
SHKBP1Q8TBC3 TMPO-201ENST00000261210 820 ntTSL 1 (best) BASIC22.34■■□□□ 1.17
SHKBP1Q8TBC3 LINC01117-201ENST00000443670 699 ntTSL 5 BASIC22.34■■□□□ 1.17
SHKBP1Q8TBC3 HMX1-202ENST00000506970 651 ntTSL 1 (best) BASIC22.34■■□□□ 1.17
SHKBP1Q8TBC3 NDUFV2-AS1-201ENST00000582375 770 ntTSL 2 BASIC22.34■■□□□ 1.17
SHKBP1Q8TBC3 PARP1-210ENST00000629232 477 ntTSL 5 BASIC22.34■■□□□ 1.17
SHKBP1Q8TBC3 ASF1B-201ENST00000263382 2059 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
SHKBP1Q8TBC3 STK32C-201ENST00000298630 2086 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
SHKBP1Q8TBC3 SLC35F4-206ENST00000556826 1908 ntAPPRIS P1 TSL 5 BASIC22.33■■□□□ 1.17
SHKBP1Q8TBC3 PUS1-203ENST00000443358 1664 ntAPPRIS ALT2 TSL 1 (best) BASIC22.33■■□□□ 1.17
SHKBP1Q8TBC3 NPAS3-201ENST00000346562 5847 ntAPPRIS P3 TSL 1 (best) BASIC22.33■■□□□ 1.17
SHKBP1Q8TBC3 CEACAM4-201ENST00000221954 1205 ntAPPRIS P2 TSL 1 (best) BASIC22.33■■□□□ 1.17
SHKBP1Q8TBC3 HAGH-201ENST00000397353 1257 ntAPPRIS ALT1 TSL 5 BASIC22.33■■□□□ 1.17
SHKBP1Q8TBC3 GUSBP6-202ENST00000438529 1198 ntBASIC22.33■■□□□ 1.17
SHKBP1Q8TBC3 CNN2P6-201ENST00000439038 900 ntBASIC22.33■■□□□ 1.17
SHKBP1Q8TBC3 C12orf43-208ENST00000539736 1033 ntAPPRIS ALT2 TSL 2 BASIC22.33■■□□□ 1.17
SHKBP1Q8TBC3 CEACAM4-203ENST00000600925 899 ntAPPRIS ALT2 TSL 2 BASIC22.33■■□□□ 1.17
SHKBP1Q8TBC3 QKI-207ENST00000453779 5685 ntTSL 1 (best) BASIC22.33■■□□□ 1.17
SHKBP1Q8TBC3 USP21-202ENST00000368001 2095 ntTSL 1 (best) BASIC22.33■■□□□ 1.17
SHKBP1Q8TBC3 KEAP1-202ENST00000393623 2648 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.16
SHKBP1Q8TBC3 FPGS-204ENST00000393706 2230 ntTSL 2 BASIC22.33■■□□□ 1.16
SHKBP1Q8TBC3 CACYBP-201ENST00000367679 2766 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.16
SHKBP1Q8TBC3 OSCAR-201ENST00000284648 2055 ntAPPRIS ALT2 TSL 1 (best) BASIC22.32■■□□□ 1.16
SHKBP1Q8TBC3 AP006587.3-201ENST00000525742 1516 ntBASIC22.32■■□□□ 1.16
SHKBP1Q8TBC3 CNN3-201ENST00000370206 2165 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
SHKBP1Q8TBC3 CIDEB-201ENST00000258807 2294 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
SHKBP1Q8TBC3 NOC4L-201ENST00000330579 1632 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
SHKBP1Q8TBC3 FMR1-AS1-201ENST00000594922 2005 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
SHKBP1Q8TBC3 MAP1LC3A-202ENST00000374837 961 ntTSL 3 BASIC22.32■■□□□ 1.16
SHKBP1Q8TBC3 METTL15-202ENST00000403099 795 ntTSL 5 BASIC22.32■■□□□ 1.16
SHKBP1Q8TBC3 ARL6IP4-205ENST00000412505 818 ntTSL 5 BASIC22.32■■□□□ 1.16
SHKBP1Q8TBC3 EIF5A-205ENST00000419711 1271 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
SHKBP1Q8TBC3 TSPY6P-201ENST00000448518 926 ntBASIC22.32■■□□□ 1.16
SHKBP1Q8TBC3 HTATIP2-208ENST00000532505 595 ntTSL 2 BASIC22.32■■□□□ 1.16
SHKBP1Q8TBC3 KRT18P20-201ENST00000548986 1279 ntBASIC22.32■■□□□ 1.16
SHKBP1Q8TBC3 SLC7A5P2-201ENST00000553010 536 ntBASIC22.32■■□□□ 1.16
SHKBP1Q8TBC3 AC142086.2-201ENST00000569753 217 ntBASIC22.32■■□□□ 1.16
SHKBP1Q8TBC3 SLC41A3-201ENST00000315891 1797 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
SHKBP1Q8TBC3 TYMP-202ENST00000395678 1614 ntAPPRIS P3 TSL 1 (best) BASIC22.31■■□□□ 1.16
SHKBP1Q8TBC3 QPCT-201ENST00000338415 1739 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
Retrieved 100 of 98,524 protein–RNA pairs in 23.2 ms